Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

11845314 .. 11846350

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGGTCGATGCATATAAGAGTAACGGTATAGCATATGTGAAGGGCCCTGTGGATAACGGGCTTCTTCTTGGACCAACTGTGATTATGACTGGATCATGGGTCACAAAAATGTTTAAAAAGCCCAACAGAATAACCCAACAAACCCAAGGACAACTACGTCATTTCAATGTCCACTCTCTCAGCCTCCTTCTCCCTCCAAAACCCCTACGCCCCCAAACCCAGAGCGCCGCCGAAGAAGCCATGCCTCCGAAATTCGATCCCTCTCAGGTCGTCGATGTCTACGTCCGAGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTCGCTCCCAAGATCGGTCCTCTGGGTCTCTCCCCCAAAAAGATCGGAGAAGACATAGCTAAAGAGACCGCCAAGGACTGGAAGGGCCTGAGAGTCACCGTCAAGCTCACCGTGCAGAATCGTCAGGCCAAGGTCTCCGTTGTCCCCTCCGCCGCTGCTCTCGTCATCAAGGCGTTGAAGGAGCCAGAGCGCGACAGGAAGAAGACTAAGAACATCAAGCACAGCGGGAACATTTCGTTGGACGATGTGATTGAGATTGCTAAGGTGATGAGGAACAGGTCCATGGCGAAGGAGTTGGCCGGGACCGTGAAGGAGATTCTGGGCACCTGCGTTTCGGTCGGGTGCACCGTCGACGGCAAGGACCCGAAGGATCTGCAGCAGGAGATTGCCGACGGTGATGTTGAAATTCCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

248

Amino Acids

26.69

Weight (kDa)

9.38

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	94 - 151	1.8e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	156 - 225	7.3e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
AasI	GACNNNNNNGTC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	659
AccB1I	GGYRCC	2 cut(s)	311, 647
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccI	GTMKAC	2 cut(s)	282, 675
AccII	CGCG	1 cut(s)	516
AciI	CCGC	6 cut(s)	231, 315, 393, 474, 477, 549
AclWI	GGATC	3 cut(s)	103, 254, 702
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	2 cut(s)	254, 729
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	338, 402
AgsI	TTSAA	3 cut(s)	169, 502, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	2 cut(s)	383, 430
AluI	AGCT	2 cut(s)	383, 430
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	3 cut(s)	356, 383, 463
Alw44I	GTGCAC	1 cut(s)	667
AlwI	GGATC	3 cut(s)	103, 254, 702
AoxI	GGCC	4 cut(s)	46, 409, 450, 621
ApaI	GGGCCC	1 cut(s)	50
ApaLI	GTGCAC	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	479, 700
ApoI	RAATTY	2 cut(s)	254, 729
AspLEI	GCGC	3 cut(s)	230, 314, 516
AspS9I	GGNCC	8 cut(s)	46, 47, 74, 341, 409, 603, 627, 685
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	5 cut(s)	286, 412, 424, 601, 731
AvaII	GGWCC	5 cut(s)	74, 341, 603, 627, 685
BaeGI	GKGCMC	3 cut(s)	50, 650, 671
BanI	GGYRCC	2 cut(s)	311, 647
BanII	GRGCYC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	381, 533
Bbv12I	GWGCWC	1 cut(s)	671
BbvI	GCAGC	2 cut(s)	466, 712
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	3 cut(s)	356, 383, 463
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	2 cut(s)	231, 315
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	5 cut(s)	231, 315, 477, 480, 701
BlsI	GCNGC	5 cut(s)	232, 316, 478, 481, 702
Bme1390I	CCNGG	1 cut(s)	625
Bme18I	GGWCC	5 cut(s)	74, 341, 603, 627, 685
BmgT120I	GGNCC	8 cut(s)	46, 47, 74, 341, 409, 603, 627, 685
BmiI	GGNNCC	6 cut(s)	48, 313, 507, 628, 649, 687
BmrFI	CCNGG	1 cut(s)	625
BpiI	GAAGAC	2 cut(s)	381, 533
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	3 cut(s)	356, 383, 463
BsaJI	CCNNGG	5 cut(s)	148, 396, 453, 606, 735
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 402
Bse1I	ACTGG	3 cut(s)	97, 318, 407
BseDI	CCNNGG	5 cut(s)	148, 396, 453, 606, 735
BseLI	CCNNNNNNNGG	2 cut(s)	338, 402
BseMII	CTCAG	3 cut(s)	196, 281, 404
BseNI	ACTGG	3 cut(s)	97, 318, 407
BseSI	GKGCMC	3 cut(s)	50, 650, 671
BseXI	GCAGC	2 cut(s)	466, 712
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	4 cut(s)	48, 411, 452, 623
BshNI	GGYRCC	2 cut(s)	311, 647
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	297, 624
BslFI	GGGAC	2 cut(s)	452, 640
BslI	CCNNNNNNNGG	2 cut(s)	338, 402
BsmAI	GTCTC	3 cut(s)	356, 383, 463
BsmFI	GGGAC	2 cut(s)	452, 640
BsnI	GGCC	4 cut(s)	48, 411, 452, 623
Bso31I	GGTCTC	3 cut(s)	356, 383, 463
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	3 cut(s)	50, 650, 671
Bsp143I	GATC	5 cut(s)	95, 259, 336, 366, 694
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	6 cut(s)	231, 315, 393, 474, 477, 549
BspANI	GGCC	4 cut(s)	48, 411, 452, 623
BspCNI	CTCAG	3 cut(s)	195, 280, 405
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	6 cut(s)	48, 313, 507, 628, 649, 687
BspMAI	CTGCAG	1 cut(s)	702
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	103, 254, 702
BspT107I	GGYRCC	2 cut(s)	311, 647
BspTNI	GGTCTC	3 cut(s)	356, 383, 463
BsrI	ACTGG	3 cut(s)	97, 318, 407
BssECI	CCNNGG	5 cut(s)	148, 396, 453, 606, 735
BssMI	GATC	5 cut(s)	95, 259, 336, 366, 694
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	5 cut(s)	148, 396, 453, 606, 735
Bst4CI	ACNGT	7 cut(s)	29, 82, 424, 436, 631, 673, 719
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	5 cut(s)	182, 267, 413, 531, 585
BstDSI	CCRYGG	1 cut(s)	606
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	2 cut(s)	231, 315
BstHHI	GCGC	3 cut(s)	230, 314, 516
BstKTI	GATC	5 cut(s)	98, 262, 339, 369, 697
BstMAI	GTCTC	3 cut(s)	356, 383, 463
BstMBI	GATC	5 cut(s)	95, 259, 336, 366, 694
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 309, 436
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	1 cut(s)	698
BstSLI	GKGCMC	3 cut(s)	50, 650, 671
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	466, 712
BstV2I	GAAGAC	2 cut(s)	381, 533
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	4 cut(s)	48, 411, 452, 623
BtgI	CCRYGG	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	3 cut(s)	230, 314, 516
Cfr13I	GGNCC	8 cut(s)	46, 47, 74, 341, 409, 603, 627, 685
CviAII	CATG	3 cut(s)	99, 244, 607
DdeI	CTNAG	5 cut(s)	182, 267, 413, 531, 585
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	5 cut(s)	97, 261, 338, 368, 696
DpnII	GATC	5 cut(s)	95, 259, 336, 366, 694
DraI	TTTAAA	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	159
DseDI	GACNNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	463
Eco130I	CCWWGG	5 cut(s)	148, 396, 453, 606, 735
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	3 cut(s)	356, 383, 463
Eco47I	GGWCC	5 cut(s)	74, 341, 603, 627, 685
EcoO109I	RGGNCCY	4 cut(s)	46, 47, 409, 685
EcoT14I	CCWWGG	5 cut(s)	148, 396, 453, 606, 735
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
ErhI	CCWWGG	5 cut(s)	148, 396, 453, 606, 735
FaeI	CATG	3 cut(s)	102, 247, 610
FaqI	GGGAC	2 cut(s)	452, 640
FatI	CATG	3 cut(s)	98, 243, 606
FauI	CCCGC	1 cut(s)	542
FauNDI	CATATG	1 cut(s)	37
FblI	GTMKAC	2 cut(s)	282, 675
Fnu4HI	GCNGC	5 cut(s)	231, 315, 477, 480, 701
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	231, 315, 477, 480, 701
GlaI	GCGC	3 cut(s)	229, 313, 515
GluI	GCNGC	5 cut(s)	231, 315, 477, 480, 701
HaeII	RGCGCY	2 cut(s)	231, 315
HaeIII	GGCC	4 cut(s)	48, 411, 452, 623
HapII	CCGG	2 cut(s)	297, 624
HhaI	GCGC	3 cut(s)	230, 314, 516
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	102, 247, 610
Hin6I	GCGC	3 cut(s)	228, 312, 514
HinP1I	GCGC	3 cut(s)	228, 312, 514
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	4 cut(s)	291, 417, 442, 640
HpaII	CCGG	2 cut(s)	297, 624
HphI	GGTGA	5 cut(s)	286, 412, 424, 601, 731
Hpy166II	GTNNAC	4 cut(s)	175, 283, 669, 676
Hpy188I	TCNGA	3 cut(s)	252, 290, 371
Hpy8I	GTNNAC	4 cut(s)	175, 283, 669, 676
Hpy99I	CGWCG	4 cut(s)	278, 677, 680, 719
HpyAV	CCTTC	7 cut(s)	37, 200, 400, 496, 607, 628, 685
HpyCH4III	ACNGT	7 cut(s)	29, 82, 424, 436, 631, 673, 719
HpyCH4IV	ACGT	2 cut(s)	160, 285
HpyCH4V	TGCA	4 cut(s)	14, 439, 669, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 309, 436
HpyF3I	CTNAG	5 cut(s)	182, 267, 413, 531, 585
HpySE526I	ACGT	2 cut(s)	160, 285
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	102, 247, 610
HspAI	GCGC	3 cut(s)	228, 312, 514
KasI	GGCGCC	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	95, 259, 336, 366, 694
LmnI	GCTCC	2 cut(s)	334, 505
Lsp1109I	GCAGC	2 cut(s)	466, 712
MaeII	ACGT	2 cut(s)	160, 285
MaeIII	GTNAC	4 cut(s)	23, 103, 292, 418
MalI	GATC	5 cut(s)	97, 261, 338, 368, 696
MboI	GATC	5 cut(s)	95, 259, 336, 366, 694
MboII	GAAGA	5 cut(s)	59, 248, 386, 535, 538
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	3 cut(s)	50, 650, 671
MluCI	AATT	2 cut(s)	254, 729
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	300, 426
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	9 cut(s)	197, 207, 258, 274, 293, 298, 354, 481, 588
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	110, 168
MspA1I	CMGCKG	2 cut(s)	479, 549
MspI	CCGG	2 cut(s)	297, 624
MspR9I	CCNGG	1 cut(s)	625
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	239, 309, 436
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	95, 259, 336, 366, 694
NlaIII	CATG	3 cut(s)	102, 247, 610
NlaIV	GGNNCC	6 cut(s)	48, 313, 507, 628, 649, 687
NmuCI	GTSAC	3 cut(s)	103, 292, 418
NsiI	ATGCAT	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 669
PfeI	GAWTC	2 cut(s)	442, 640
PflMI	CCANNNNNTGG	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	232, 316, 478, 481, 702
PleI	GAGTC	2 cut(s)	299, 425
PluTI	GGCGCC	1 cut(s)	315
PpsI	GAGTC	2 cut(s)	299, 425
PpuMI	RGGWCCY	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	685
PspN4I	GGNNCC	6 cut(s)	48, 313, 507, 628, 649, 687
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	8 cut(s)	46, 47, 74, 341, 409, 603, 627, 685
PspPPI	RGGWCCY	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	694
RseI	CAYNNNNRTG	2 cut(s)	110, 168
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	5 cut(s)	231, 315, 477, 480, 701
Sau3AI	GATC	5 cut(s)	95, 259, 336, 366, 694
Sau96I	GGNCC	8 cut(s)	46, 47, 74, 341, 409, 603, 627, 685
SchI	GAGTC	2 cut(s)	300, 426
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	3 cut(s)	50, 650, 671
SfcI	CTRYAG	1 cut(s)	698
SfoI	GGCGCC	1 cut(s)	313
SgrDI	CGTCGACG	1 cut(s)	674
SinI	GGWCC	5 cut(s)	74, 341, 603, 627, 685
SmiMI	CAYNNNNRTG	2 cut(s)	110, 168
Sse9I	AATT	2 cut(s)	254, 729
SsiI	CCGC	6 cut(s)	231, 315, 393, 474, 477, 549
SspDI	GGCGCC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	5 cut(s)	148, 396, 453, 606, 735
TaaI	ACNGT	7 cut(s)	29, 82, 424, 436, 631, 673, 719
TaiI	ACGT	2 cut(s)	163, 288
TaqI	TCGA	4 cut(s)	9, 258, 276, 675
TaqII	GACCGA	2 cut(s)	329, 649
TasI	AATT	2 cut(s)	254, 729
TauI	GCSGC	3 cut(s)	233, 317, 479
TfiI	GAWTC	2 cut(s)	442, 640
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	3 cut(s)	103, 292, 418
TseI	GCWGC	2 cut(s)	479, 700
Tsp45I	GTSAC	3 cut(s)	103, 292, 418
TspGWI	ACGGA	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	402
VneI	GTGCAC	1 cut(s)	667
VpaK11BI	GGWCC	5 cut(s)	74, 341, 603, 627, 685
XapI	RAATTY	2 cut(s)	254, 729
XmiI	GTMKAC	2 cut(s)	282, 675
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.