Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

16221290 .. 16221619

Gene Structure 330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1186500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTATCATCAATGCATAACCGTCAAGCTCACCGTCCAGAATAGGCAGGCTAAGGTCTCGGTGGTGCCGTCGTCGGCCGCACTGGTCATCAAGGCCTTGAAAGAGCCCGAGCGCGATCGCAAGAAAACCAAGAACATCAAGCACAACGGCAACATCTCCATTGATGACGTCATCGAGATTGCCAAGGTTATGAGGAACAGATCCATGGCCATGGAGCTGGCCGGCACGGTGAAGGAGATTCTCGGAACCTGCGTCTCGGTGGGCTGCACGGTCGACGGAAGGAACCCTAAGGACATCGCCGACGGTGACGTCGAGATCCCTCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

110

Amino Acids

11.93

Weight (kDa)

8.84

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11	PF00298	22 - 91	2.4e-19	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AatII	GACGTC	2 cut(s)	171, 312
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	195, 310
AcoI	YGGCCR	3 cut(s)	75, 207, 219
AcyI	GRCGYC	2 cut(s)	168, 309
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	28, 217
AluI	AGCT	2 cut(s)	28, 217
Alw26I	GTCTC	2 cut(s)	61, 259
AlwI	GGATC	2 cut(s)	195, 310
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	75, 93, 207, 219
ApeKI	GCWGC	1 cut(s)	264
AsiSI	GCGATCGC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	22, 241, 317
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	52, 163
BcoDI	GTCTC	2 cut(s)	61, 259
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	78, 265
BlsI	GCNGC	2 cut(s)	79, 266
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	3 cut(s)	66, 247, 284
Bpu10I	CCTNAGC	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	168, 309
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	183, 204, 210
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	183, 204, 210
BseNI	ACTGG	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	3 cut(s)	78, 118, 273
BshFI	GGCC	4 cut(s)	77, 95, 209, 221
BshNI	GGYRCC	1 cut(s)	64
BsiEI	CGRYCG	3 cut(s)	78, 118, 273
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	222
BsmAI	GTCTC	2 cut(s)	61, 259
BsmBI	CGTCTC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	77, 95, 209, 221
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	115, 200, 315
Bsp19I	CCATGG	2 cut(s)	204, 210
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	77, 95, 209, 221
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	66, 247, 284
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	195, 310
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	183, 204, 210
BssMI	GATC	3 cut(s)	115, 200, 315
BssNI	GRCGYC	2 cut(s)	168, 309
BssT1I	CCWWGG	3 cut(s)	183, 204, 210
Bst4CI	ACNGT	5 cut(s)	22, 34, 229, 271, 305
BstACI	GRCGYC	2 cut(s)	168, 309
BstC8I	GCNNGC	3 cut(s)	48, 219, 223
BstDEI	CTNAG	2 cut(s)	51, 288
BstDSI	CCRYGG	2 cut(s)	204, 210
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	118, 203, 318
BstMAI	GTCTC	2 cut(s)	61, 259
BstMBI	GATC	3 cut(s)	115, 200, 315
BstMCI	CGRYCG	3 cut(s)	78, 118, 273
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	200, 315
BstXI	CCANNNNNNTGG	2 cut(s)	211, 217
BstYI	RGATCY	2 cut(s)	200, 315
BstZI	CGGCCG	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	77, 95, 209, 221
BtgI	CCRYGG	2 cut(s)	204, 210
BtgZI	GCGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	3 cut(s)	48, 219, 223
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	221
CseI	GACGC	1 cut(s)	241
CviAII	CATG	2 cut(s)	205, 211
CviJI	RGCY	9 cut(s)	28, 50, 77, 95, 106, 209, 217, 221, 264
CviKI_1	RGCY	9 cut(s)	28, 50, 77, 95, 106, 209, 217, 221, 264
DdeI	CTNAG	2 cut(s)	51, 288
DpnI	GATC	3 cut(s)	117, 202, 317
DpnII	GATC	3 cut(s)	115, 200, 315
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
EaeI	YGGCCR	3 cut(s)	75, 207, 219
EagI	CGGCCG	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	3 cut(s)	183, 204, 210
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	107
EcoT14I	CCWWGG	3 cut(s)	183, 204, 210
EcoT22I	ATGCAT	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	3 cut(s)	183, 204, 210
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	2 cut(s)	208, 214
FaiI	YATR	4 cut(s)	17, 191, 206, 212
FatI	CATG	2 cut(s)	204, 210
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	78, 265
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	78, 265
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	78, 265
HaeIII	GGCC	4 cut(s)	77, 95, 209, 221
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	2 cut(s)	168, 309
Hin1II	CATG	2 cut(s)	208, 214
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	3 cut(s)	22, 241, 317
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	4 cut(s)	37, 175, 313, 323
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	5 cut(s)	73, 76, 278, 305, 314
HpyAV	CCTTC	2 cut(s)	226, 273
HpyCH4III	ACNGT	5 cut(s)	22, 34, 229, 271, 305
HpyCH4IV	ACGT	2 cut(s)	168, 309
HpyCH4V	TGCA	2 cut(s)	15, 267
HpyF3I	CTNAG	2 cut(s)	51, 288
HpySE526I	ACGT	2 cut(s)	168, 309
Hsp92I	GRCGYC	2 cut(s)	168, 309
Hsp92II	CATG	2 cut(s)	208, 214
HspAI	GCGC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	115, 200, 315
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	32, 50, 68, 203, 235, 262
Lsp1109I	GCAGC	1 cut(s)	251
MaeII	ACGT	2 cut(s)	168, 309
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	117, 202, 317
MboI	GATC	3 cut(s)	115, 200, 315
MflI	RGATCY	2 cut(s)	200, 315
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	2 cut(s)	186, 330
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	114
NaeI	GCCGGC	1 cut(s)	223
NcoI	CCATGG	2 cut(s)	204, 210
NdeII	GATC	3 cut(s)	115, 200, 315
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	208, 214
NlaIV	GGNNCC	3 cut(s)	66, 247, 284
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 249, 309
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	79, 266
Ple19I	CGATCG	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	66, 247, 284
PsuI	RGATCY	2 cut(s)	200, 315
PvuI	CGATCG	1 cut(s)	118
RgaI	GCGATCGC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	272
SatI	GCNGC	2 cut(s)	78, 265
Sau3AI	GATC	3 cut(s)	115, 200, 315
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	30, 57, 171, 189, 219, 251, 312
SfaAI	GCGATCGC	1 cut(s)	118
SgfI	GCGATCGC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	3 cut(s)	183, 204, 210
TaaI	ACNGT	5 cut(s)	22, 34, 229, 271, 305
TaiI	ACGT	2 cut(s)	171, 312
TaqI	TCGA	4 cut(s)	174, 273, 312, 324
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	238
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	273
ZraI	GACGTC	2 cut(s)	169, 310
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.