Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

24380504 .. 24381599

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCGAAATTGGATCCATCTCAAATCGTCGACGTCTACGTCCGAGTCACCGGAGGTGAGGTCGGAGCAGCGTCTTCACTCGCTCCAAAGATCGGTCCACTCGGTCTGGCACCAAAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATGGAAAGGTCTTCGAGTCACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGTGGTTCCATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAAGAAAGTGAAGAACATCAAACATAATGGCAACATTTCGTTTGATGATGTGATTGAGATTGCTAAGATAATGCGTCCTAGATCTATCGCTAAGGAATTGAGTGGAACAGTGAAGGAGATTTTAGGAACTTGTGTCTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGAAGAAATTAACAGTGGTGACATTGATATTCCTAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

166

Amino Acids

17.84

Weight (kDa)

9.02

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	6.5e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	3.2e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	2 cut(s)	33, 39
AciI	CCGC	3 cut(s)	5, 231, 236
AclWI	GGATC	3 cut(s)	11, 24, 459
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	187, 209
AluI	AGCT	2 cut(s)	187, 209
Alw26I	GTCTC	2 cut(s)	140, 418
AlwI	GGATC	3 cut(s)	11, 24, 459
ApeKI	GCWGC	2 cut(s)	71, 233
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	4 cut(s)	43, 71, 169, 488
AvaII	GGWCC	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	447
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	112
BbsI	GAAGAC	3 cut(s)	69, 138, 161
BbvI	GCAGC	2 cut(s)	83, 245
BccI	CCATC	3 cut(s)	28, 235, 428
BcoDI	GTCTC	2 cut(s)	140, 418
BfaI	CTAG	2 cut(s)	242, 357
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	4 cut(s)	5, 72, 234, 237
BlsI	GCNGC	4 cut(s)	6, 73, 235, 238
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	18, 114, 225, 264
BpiI	GAAGAC	3 cut(s)	69, 138, 161
Bpu10I	CCTNAGC	2 cut(s)	210, 369
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	83, 245
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	140, 418
Bsp143I	GATC	5 cut(s)	16, 93, 123, 359, 451
BspACI	CCGC	3 cut(s)	5, 231, 236
BspLI	GGNNCC	4 cut(s)	18, 114, 225, 264
BspPI	GGATC	3 cut(s)	11, 24, 459
BspT107I	GGYRCC	1 cut(s)	112
BssMI	GATC	5 cut(s)	16, 93, 123, 359, 451
BssNI	GRCGYC	1 cut(s)	36
Bst4CI	ACNGT	6 cut(s)	181, 193, 220, 388, 430, 473
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	210, 342, 369, 447
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	5 cut(s)	19, 96, 126, 362, 454
BstMAI	GTCTC	2 cut(s)	140, 418
BstMBI	GATC	5 cut(s)	16, 93, 123, 359, 451
BstV1I	GCAGC	2 cut(s)	83, 245
BstV2I	GAAGAC	3 cut(s)	69, 138, 161
BstX2I	RGATCY	3 cut(s)	16, 359, 451
BstYI	RGATCY	3 cut(s)	16, 359, 451
Bsu36I	CCTNAGG	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	4 cut(s)	225, 393, 426, 478
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	2 cut(s)	63, 341
Csp6I	GTAC	1 cut(s)	194
CviJI	RGCY	5 cut(s)	187, 209, 239, 254, 265
CviKI_1	RGCY	5 cut(s)	187, 209, 239, 254, 265
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	4 cut(s)	210, 342, 369, 447
DpnI	GATC	5 cut(s)	18, 95, 125, 361, 453
DpnII	GATC	5 cut(s)	16, 93, 123, 359, 451
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	447
FaiI	YATR	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	33, 39
Fnu4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FspBI	CTAG	2 cut(s)	242, 357
GluI	GCNGC	4 cut(s)	5, 72, 234, 237
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	2 cut(s)	63, 341
Hin1I	GRCGYC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	48, 174, 199
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	43, 71, 169, 488
Hpy166II	GTNNAC	3 cut(s)	34, 40, 101
Hpy188I	TCNGA	3 cut(s)	47, 68, 128
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	3 cut(s)	34, 40, 101
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	6 cut(s)	181, 193, 220, 388, 430, 473
HpyCH4IV	ACGT	2 cut(s)	36, 42
HpyCH4V	TGCA	1 cut(s)	426
HpyF3I	CTNAG	4 cut(s)	210, 342, 369, 447
HpySE526I	ACGT	2 cut(s)	36, 42
Hsp92I	GRCGYC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	16, 93, 123, 359, 451
LmnI	GCTCC	3 cut(s)	68, 91, 262
LpnPI	CCDG	4 cut(s)	67, 95, 279, 443
Lsp1109I	GCAGC	2 cut(s)	83, 245
MaeI	CTAG	2 cut(s)	242, 357
MaeII	ACGT	2 cut(s)	36, 42
MaeIII	GTNAC	4 cut(s)	49, 175, 214, 476
MalI	GATC	5 cut(s)	18, 95, 125, 361, 453
MboI	GATC	5 cut(s)	16, 93, 123, 359, 451
MboII	GAAGA	8 cut(s)	69, 133, 143, 161, 292, 301, 446, 473
MflI	RGATCY	3 cut(s)	16, 359, 451
MluCI	AATT	3 cut(s)	11, 374, 465
MlyI	GAGTC	2 cut(s)	57, 183
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	50, 55, 266
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	54
NdeII	GATC	5 cut(s)	16, 93, 123, 359, 451
NlaIV	GGNNCC	4 cut(s)	18, 114, 225, 264
NmuCI	GTSAC	4 cut(s)	49, 175, 214, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	6, 73, 235, 238
PleI	GAGTC	2 cut(s)	56, 182
PpsI	GAGTC	2 cut(s)	56, 182
PspN4I	GGNNCC	4 cut(s)	18, 114, 225, 264
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	16, 359, 451
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	5, 72, 234, 237
Sau3AI	GATC	5 cut(s)	16, 93, 123, 359, 451
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	57, 183
SetI	ASST	8 cut(s)	39, 45, 61, 66, 169, 189, 211, 216
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	11, 374, 465
SsiI	CCGC	3 cut(s)	5, 231, 236
SspMI	CTAG	2 cut(s)	242, 357
TaaI	ACNGT	6 cut(s)	181, 193, 220, 388, 430, 473
TaiI	ACGT	2 cut(s)	39, 45
TaqI	TCGA	2 cut(s)	33, 172
TaqII	GACCGA	2 cut(s)	86, 95
TasI	AATT	3 cut(s)	11, 374, 465
TauI	GCSGC	2 cut(s)	7, 239
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	4 cut(s)	225, 393, 433, 478
TseFI	GTSAC	4 cut(s)	49, 175, 214, 476
TseI	GCWGC	2 cut(s)	71, 233
Tsp45I	GTSAC	4 cut(s)	49, 175, 214, 476
TspRI	CASTG	4 cut(s)	225, 393, 433, 478
VpaK11BI	GGWCC	1 cut(s)	98
XmiI	GTMKAC	2 cut(s)	33, 39
XspI	CTAG	2 cut(s)	242, 357
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.