Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

12489991 .. 12490603

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCACCGACCTGTTATCCTTCCACTGCCAAAAGAAACCTGAGCCTTCGCCCAGACCACACGGCTCAACTCTCGGCTTGGAATGGGCGGGCCAGAATAGAGCCACGACAGAACCGACCCGCTGAAACCAGACCAGCGTTATGCACGACAGCTCCCACTGCCACACAACCCAGTTCAAGACTGCGCTGTCCAAGCACCGCCAAAGACTGGAAGGGTCTCCGTGTCACCATCAAGCTCACCGTCCAGAACAGGCAAGCCAAGGTCTCGGTGGTGCCGTCGGCGGCTGCCCTGGTAATCAAGGCCTTGAAGGAGCCCGAGCGCGATCGCAAGAAGACCAAGAACATCAAGCACAGCGGCAACATCTCCATCGATGACGTCATCGAGATAGCCAAGGTTATGAGGAACAGATCCATGGCCAAGGAGCTCGCCGGCACGGTGAAGGAGATTCTCGGAACCTGCGTCTCGGTGGGCTGCACGGTCGACGGCAAGGACCCCAAGGATTTGCAACAGGAGATCACCGACGGTGACGTTGAGATCCCTCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

183

Amino Acids

19.92

Weight (kDa)

9.71

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	186
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	464
AccB1I	GGYRCC	2 cut(s)	4, 271
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	1 cut(s)	321
AciI	CCGC	5 cut(s)	88, 120, 198, 281, 354
AclWI	GGATC	2 cut(s)	402, 529
AcoI	YGGCCR	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	177, 307
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	152, 235, 424
AluI	AGCT	3 cut(s)	152, 235, 424
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	3 cut(s)	221, 268, 466
AlwI	GGATC	2 cut(s)	402, 529
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	90, 300, 414
ApeKI	GCWGC	2 cut(s)	284, 471
AsiSI	GCGATCGC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	186, 321
AspS9I	GGNCC	2 cut(s)	90, 490
AsuHPI	GGTGA	5 cut(s)	217, 229, 448, 508, 536
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	2 cut(s)	4, 271
BanII	GRGCYC	2 cut(s)	315, 426
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	271, 458
BccI	CCATC	2 cut(s)	236, 374
BceAI	ACGGC	3 cut(s)	78, 259, 499
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	221, 268, 466
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	4 cut(s)	282, 285, 355, 472
BlsI	GCNGC	4 cut(s)	283, 286, 356, 473
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	90, 490
BmiI	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	221, 268
BsaJI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	171, 212
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	171, 212
BseXI	GCAGC	2 cut(s)	271, 458
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	2 cut(s)	325, 480
BshFI	GGCC	3 cut(s)	92, 302, 416
BshNI	GGYRCC	2 cut(s)	4, 271
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	2 cut(s)	325, 480
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	221, 268, 466
BsmBI	CGTCTC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	92, 302, 416
Bso31I	GGTCTC	2 cut(s)	221, 268
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	315, 426
Bsp143I	GATC	4 cut(s)	322, 407, 513, 534
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	5 cut(s)	88, 120, 198, 281, 354
BspANI	GGCC	3 cut(s)	92, 302, 416
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	2 cut(s)	402, 529
BspT107I	GGYRCC	2 cut(s)	4, 271
BspTNI	GGTCTC	2 cut(s)	221, 268
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	171, 212
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	6 cut(s)	258, 288, 390, 411, 417, 495
BssMI	GATC	4 cut(s)	322, 407, 513, 534
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	241, 436, 478, 524
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	4 cut(s)	90, 255, 426, 430
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	186, 321
BstKTI	GATC	4 cut(s)	325, 410, 516, 537
BstMAI	GTCTC	3 cut(s)	221, 268, 466
BstMBI	GATC	4 cut(s)	322, 407, 513, 534
BstMCI	CGRYCG	2 cut(s)	325, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 192
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	271, 458
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	2 cut(s)	407, 534
BstYI	RGATCY	2 cut(s)	407, 534
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	92, 302, 416
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	411
BtsI	GCAGTG	2 cut(s)	24, 156
BtsIMutI	CAGTG	2 cut(s)	24, 156
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	4 cut(s)	90, 255, 426, 430
CfoI	GCGC	2 cut(s)	186, 321
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	90, 490
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	448
CviAII	CATG	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	324, 409, 515, 536
DpnII	GATC	4 cut(s)	322, 407, 513, 534
DrdI	GACNNNNNNGTC	1 cut(s)	186
DseDI	GACNNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	2 cut(s)	315, 426
Eco31I	GGTCTC	2 cut(s)	221, 268
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
EcoT38I	GRGCYC	2 cut(s)	315, 426
ErhI	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	1 cut(s)	415
FaiI	YATR	3 cut(s)	142, 398, 413
FatI	CATG	1 cut(s)	411
FauI	CCCGC	2 cut(s)	81, 127
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	282, 285, 355, 472
FriOI	GRGCYC	2 cut(s)	315, 426
Fsp4HI	GCNGC	4 cut(s)	282, 285, 355, 472
GlaI	GCGC	2 cut(s)	185, 320
GluI	GCNGC	4 cut(s)	282, 285, 355, 472
HaeIII	GGCC	3 cut(s)	92, 302, 416
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	448
HhaI	GCGC	2 cut(s)	186, 321
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	2 cut(s)	184, 319
HinP1I	GCGC	2 cut(s)	184, 319
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	5 cut(s)	217, 229, 448, 508, 536
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	4 cut(s)	177, 244, 382, 542
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	3 cut(s)	280, 485, 524
HpyAV	CCTTC	5 cut(s)	30, 56, 205, 301, 433
HpyCH4III	ACNGT	4 cut(s)	241, 436, 478, 524
HpyCH4IV	ACGT	2 cut(s)	375, 528
HpyCH4V	TGCA	3 cut(s)	144, 474, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 192
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	375, 528
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	2 cut(s)	184, 319
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	322, 407, 513, 534
LmnI	GCTCC	3 cut(s)	157, 310, 421
Lsp1109I	GCAGC	2 cut(s)	271, 458
MaeII	ACGT	2 cut(s)	375, 528
MaeIII	GTNAC	2 cut(s)	223, 524
MalI	GATC	4 cut(s)	324, 409, 515, 536
MboI	GATC	4 cut(s)	322, 407, 513, 534
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	2 cut(s)	407, 534
MhlI	GDGCHC	2 cut(s)	315, 426
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	2 cut(s)	393, 549
Mox20I	TGGCCA	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	122, 354
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	158, 192
NaeI	GCCGGC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	4 cut(s)	322, 407, 513, 534
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	223, 524
PceI	AGGCCT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	3 cut(s)	112, 272, 456
PdiI	GCCGGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	283, 286, 356, 473
Ple19I	CGATCG	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	5 cut(s)	6, 273, 312, 454, 492
PspPI	GGNCC	2 cut(s)	90, 490
PspPPI	RGGWCCY	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	407, 534
PvuI	CGATCG	1 cut(s)	325
RgaI	GCGATCGC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	479
SatI	GCNGC	4 cut(s)	282, 285, 355, 472
Sau3AI	GATC	4 cut(s)	322, 407, 513, 534
Sau96I	GGNCC	2 cut(s)	90, 490
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	315, 426
SfaAI	GCGATCGC	1 cut(s)	325
SgfI	GCGATCGC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	490
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	5 cut(s)	88, 120, 198, 281, 354
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	5 cut(s)	258, 390, 411, 417, 495
TaaI	ACNGT	4 cut(s)	241, 436, 478, 524
TaiI	ACGT	2 cut(s)	378, 531
TaqI	TCGA	4 cut(s)	369, 381, 480, 543
TauI	GCSGC	2 cut(s)	284, 357
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	2 cut(s)	31, 163
TseFI	GTSAC	2 cut(s)	223, 524
TseI	GCWGC	2 cut(s)	284, 471
Tsp45I	GTSAC	2 cut(s)	223, 524
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	31, 163
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	480
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.