Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

37913540 .. 37916546

Gene Structure 3007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0319700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGCTTGAACAAATCCAAGCTTCAGGAGATGTGCCAAGCCAGAGGTTGGACCTTCCCCAAGTACAGCAGCAACCAGCAAGGCCCACCTCACCGACCTCGCTTCTCAGCCTCTGTGCTCGTCCATGGCTTCACCTTCAACACTAAAACTATGCTGACCTCTAAGAAAGAAGCCGAGTGCTGTGCTGCTGGGTTGGCCTTGGCTTACTTCGATGAAAACCCACAACCACCCCAGCCCAAACGCACCAAGTGTTTCTCTTTCCCGGCTCAGCCTTCTCATATACCTTCACTTCCTCCACCTTCATCACCAGGTTTGCCGTATCTCACATACAAGGAGAAAGAGATATGGAATGAGACAACTAGTACAGAGGGAAAGAAGGACACTTACGAACTGGAGCTAATGTTGGCAGAAGAGAGAAAGCTATGGCAGAGAGAAAAGCATCAGCTTCAACTAAAGAACTTTGAATTGGAGAATCAGATTGATATGAAAAAGAATGAGCTGGAGCACTGCCGCAAGGAGCTACAGCATATGAATGAGAGAGCAGAATCAGAGCAGAAGAAAGCAGAAAATCTGATAGCGCTGGCAGAAAAGAGAAAGAGAGAAAATGAGAAGCTTCACTCAGAAATAATTCAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAGGCCCAGAAGAATATTAAAGCACTTGAACAAATGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAATTTTACAATGCACTGATTTTCAAGGAGAGGAGCAATAATGATGAGCTGCAGGGGGCCCGTAAAGAGTTAATTGAGGGACTGAAAAATCATTCAAAAATCTATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGTGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAATTGGAACCCATACAAGGTTATTATGGATGAGACAGGAAAAAGAATGGAAATTATTGATGAAGAAGATAAAAAGTTGAAAAATTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAATTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCCCTTAAGAACACGAAGCGGCGAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

426

Amino Acids

49.68

Weight (kDa)

8.45

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dsrm	PF00035	5 - 69	2.3e-11	Double-stranded RNA binding motif
XH	PF03469	289 - 420	3.9e-50	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	1104
AciI	CCGC	2 cut(s)	511, 1267
AcsI	RAATTY	3 cut(s)	752, 1075, 1183
AcuI	CTGAAG	2 cut(s)	8, 1256
AdeI	CACNNNGTG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	65, 364
AfeI	AGCGCT	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	48, 1009, 1158
AflII	CTTAAG	1 cut(s)	1253
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
Alw21I	GWGCWC	3 cut(s)	120, 507, 965
Alw26I	GTCTC	2 cut(s)	347, 1019
AlwNI	CAGNNNCTG	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	579
AoxI	GGCC	4 cut(s)	82, 195, 681, 807
ApaI	GGGCCC	1 cut(s)	811
ApeKI	GCWGC	4 cut(s)	69, 185, 799, 905
ApoI	RAATTY	3 cut(s)	752, 1075, 1183
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	5 cut(s)	51, 83, 682, 807, 808
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	83, 124, 297, 887, 1126
AvaII	GGWCC	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	2 cut(s)	872, 1088
Bbv12I	GWGCWC	3 cut(s)	120, 507, 965
BbvI	GCAGC	4 cut(s)	81, 172, 786, 917
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	347, 1019
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	360, 1279
BfmI	CTRYAG	2 cut(s)	521, 800
BfoI	RGCGCY	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	1253
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	6 cut(s)	70, 186, 511, 800, 906, 1268
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	6 cut(s)	71, 187, 512, 801, 907, 1269
Bme1390I	CCNGG	2 cut(s)	263, 309
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	5 cut(s)	51, 83, 682, 807, 808
BmiI	GGNNCC	3 cut(s)	808, 809, 1001
BmrFI	CCNGG	2 cut(s)	263, 309
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	872, 1088
BplI	GAGNNNNNCTC	2 cut(s)	947, 979
BpmI	CTGGAG	2 cut(s)	413, 521
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	124, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 1009, 1158
Bse1I	ACTGG	2 cut(s)	396, 1152
Bse3DI	GCAATG	1 cut(s)	1247
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	124, 198
BseGI	GGATG	2 cut(s)	1027, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	48, 1009, 1158
BseMI	GCAATG	1 cut(s)	1247
BseMII	CTCAG	4 cut(s)	120, 281, 633, 1077
BseNI	ACTGG	2 cut(s)	396, 1152
BseRI	GAGGAG	1 cut(s)	796
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	4 cut(s)	81, 172, 786, 917
BseYI	CCCAGC	3 cut(s)	188, 231, 1090
BshFI	GGCC	4 cut(s)	84, 197, 683, 809
BsiHKAI	GWGCWC	3 cut(s)	120, 507, 965
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	843
BslI	CCNNNNNNNGG	3 cut(s)	48, 1009, 1158
BsmAI	GTCTC	2 cut(s)	347, 1019
BsmFI	GGGAC	1 cut(s)	843
BsnI	GGCC	4 cut(s)	84, 197, 683, 809
Bsp120I	GGGCCC	1 cut(s)	807
Bsp1286I	GDGCHC	4 cut(s)	120, 507, 811, 965
Bsp143I	GATC	2 cut(s)	742, 877
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	2 cut(s)	511, 1267
BspANI	GGCC	4 cut(s)	84, 197, 683, 809
BspCNI	CTCAG	4 cut(s)	119, 280, 632, 1078
BspLI	GGNNCC	3 cut(s)	808, 809, 1001
BspMAI	CTGCAG	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	1253
BsrDI	GCAATG	1 cut(s)	1247
BsrI	ACTGG	2 cut(s)	396, 1152
BssECI	CCNNGG	2 cut(s)	124, 198
BssMI	GATC	2 cut(s)	742, 877
BssNAI	GTATAC	1 cut(s)	1105
BssT1I	CCWWGG	2 cut(s)	124, 198
Bst1107I	GTATAC	1 cut(s)	1105
Bst2UI	CCWGG	1 cut(s)	309
Bst6I	CTCTTC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	1253
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	5 cut(s)	106, 162, 267, 619, 1086
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	1027, 1102
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	2 cut(s)	745, 880
BstMAI	GTCTC	2 cut(s)	347, 1019
BstMBI	GATC	2 cut(s)	742, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 659
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	261, 307
BstSFI	CTRYAG	2 cut(s)	521, 800
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	4 cut(s)	81, 172, 786, 917
BstV2I	GAAGAC	2 cut(s)	872, 1088
BstZ17I	GTATAC	1 cut(s)	1105
BsuRI	GGCC	4 cut(s)	84, 197, 683, 809
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	1027, 1102
BtsI	GCAGTG	3 cut(s)	505, 669, 957
BtsIMutI	CAGTG	5 cut(s)	505, 669, 764, 957, 1159
Cac8I	GCNNGC	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	5 cut(s)	51, 83, 682, 807, 808
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	64, 363
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	2 cut(s)	64, 363
DdeI	CTNAG	5 cut(s)	106, 162, 267, 619, 1086
DpnI	GATC	2 cut(s)	744, 879
DpnII	GATC	2 cut(s)	742, 877
DraI	TTTAAA	1 cut(s)	1189
DraIII	CACNNNGTG	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	124, 198
Eco24I	GRGCYC	1 cut(s)	811
Eco47I	GGWCC	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	579
Eco57I	CTGAAG	2 cut(s)	8, 1256
EcoO109I	RGGNCCY	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	124, 198
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	124, 198
FaeI	CATG	1 cut(s)	128
FaqI	GGGAC	1 cut(s)	843
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	6 cut(s)	70, 186, 511, 800, 906, 1268
FokI	GGATG	2 cut(s)	1034, 1109
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	6 cut(s)	70, 186, 511, 800, 906, 1268
FspBI	CTAG	2 cut(s)	360, 1279
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	6 cut(s)	70, 186, 511, 800, 906, 1268
GsaI	CCCAGC	3 cut(s)	192, 235, 1094
GsuI	CTGGAG	2 cut(s)	413, 521
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	4 cut(s)	84, 197, 683, 809
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	2 cut(s)	20, 611
HinfI	GANTC	3 cut(s)	472, 545, 989
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	5 cut(s)	83, 124, 297, 887, 1126
Hpy166II	GTNNAC	1 cut(s)	1105
Hpy188I	TCNGA	6 cut(s)	477, 550, 573, 622, 751, 1236
Hpy188III	TCNNGA	2 cut(s)	26, 881
Hpy8I	GTNNAC	1 cut(s)	1105
HpyAV	CCTTC	9 cut(s)	64, 145, 282, 294, 309, 370, 718, 883, 1195
HpyCH4V	TGCA	4 cut(s)	764, 802, 905, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 659
HpyF3I	CTNAG	5 cut(s)	106, 162, 267, 619, 1086
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	742, 877
LmnI	GCTCC	7 cut(s)	394, 502, 517, 651, 727, 733, 783
Lsp1109I	GCAGC	4 cut(s)	81, 172, 786, 917
LweI	GCATC	1 cut(s)	448
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	360, 1279
MaeIII	GTNAC	1 cut(s)	1114
MalI	GATC	2 cut(s)	744, 879
MboI	GATC	2 cut(s)	742, 877
MboII	GAAGA	9 cut(s)	422, 568, 700, 877, 927, 944, 1067, 1070, 1093
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	4 cut(s)	120, 507, 811, 965
MmeI	TCCRAC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	7 cut(s)	696, 716, 821, 1127, 1188, 1212, 1254
MslI	CAYNNNNRTG	1 cut(s)	531
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	263, 309
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	194, 659
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	528
NdeII	GATC	2 cut(s)	742, 877
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	808, 809, 1001
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	1114
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	472, 545, 989
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	71, 187, 512, 801, 907, 1269
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	3 cut(s)	188, 231, 1090
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	808, 809, 1001
PspOMI	GGGCCC	1 cut(s)	807
PspPI	GGNCC	5 cut(s)	51, 83, 682, 807, 808
PstI	CTGCAG	1 cut(s)	804
PstNI	CAGNNNCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	65, 364
RsaNI	GTAC	2 cut(s)	64, 363
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	7 cut(s)	696, 716, 821, 1127, 1188, 1212, 1254
SatI	GCNGC	6 cut(s)	70, 186, 511, 800, 906, 1268
Sau3AI	GATC	2 cut(s)	742, 877
Sau96I	GGNCC	5 cut(s)	51, 83, 682, 807, 808
ScrFI	CCNGG	2 cut(s)	263, 309
SduI	GDGCHC	4 cut(s)	120, 507, 811, 965
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	2 cut(s)	521, 800
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	1253
SmoI	CTYRAG	1 cut(s)	1253
SpeI	ACTAGT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	511, 1267
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	2 cut(s)	360, 1279
StyD4I	CCNGG	2 cut(s)	261, 307
StyI	CCWWGG	2 cut(s)	124, 198
TaqI	TCGA	1 cut(s)	210
TatI	WGTACW	2 cut(s)	63, 362
TauI	GCSGC	2 cut(s)	513, 1270
TfiI	GAWTC	3 cut(s)	472, 545, 989
Tru1I	TTAA	7 cut(s)	696, 716, 821, 1127, 1188, 1212, 1254
Tru9I	TTAA	7 cut(s)	696, 716, 821, 1127, 1188, 1212, 1254
TscAI	CASTG	5 cut(s)	512, 669, 771, 957, 1159
TseFI	GTSAC	1 cut(s)	1114
TseI	GCWGC	4 cut(s)	69, 185, 799, 905
Tsp45I	GTSAC	1 cut(s)	1114
TspDTI	ATGAA	7 cut(s)	228, 291, 500, 545, 1068, 1113, 1155
TspRI	CASTG	5 cut(s)	512, 669, 771, 957, 1159
Van91I	CCANNNNNTGG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	1253
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	3 cut(s)	752, 1075, 1183
XmiI	GTMKAC	1 cut(s)	1104
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	2 cut(s)	360, 1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.