Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

23742504 .. 23743435

Gene Structure 932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTCCAAAGTTCGACCCATCTCAGGTGGTCGATGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGTCCTCTGGGTCTCTCCCCAAAGAAGATCGGAGAAGACATTGCTAAAGAGACAGCCAAGGACTGGAAGGGTCTGAGAGTCACCGTCAAGCTCACCGTTCAGAATCGTCAGGCGAAGGTCTCTGTGGTGCCTTCAGCTGCGGCTCTGGTCATCAAAGCCCTGAAGGAGCCAGAGAGAGATCGCAAGAAGACGAAGAACATCAAGCACAGCGGTAACATTTCATTGGATGATGTAATTGAGATTGCTAAGATCATGAAGCACAGGTCCATGGCCAAGGAGTTGGCTGGGACGGTGAAGGAGATTTTGGGCACTTGCGTTTCTGTTGGGTGTACTGTGGATGGTAAAGACCCCAAGGATCTGCAGCAGGAGATTGCTGATGGAGATGTTGAGATTCCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.77

Weight (kDa)

9.0

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 223
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	46, 72, 236, 306
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	213, 278
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	2 cut(s)	187, 233
AluI	AGCT	2 cut(s)	187, 233
Alw26I	GTCTC	3 cut(s)	113, 140, 220
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	233, 457
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	98, 360
AsuHPI	GGTGA	4 cut(s)	43, 169, 181, 400
AvaII	GGWCC	2 cut(s)	98, 360
BaeGI	GKGCMC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	68, 223
BbsI	GAAGAC	2 cut(s)	138, 290
BbvI	GCAGC	2 cut(s)	220, 469
BccI	CCATC	3 cut(s)	28, 428, 467
BcoDI	GTCTC	3 cut(s)	113, 140, 220
BfmI	CTRYAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	4 cut(s)	72, 234, 237, 458
BlsI	GCNGC	4 cut(s)	73, 235, 238, 459
Bme18I	GGWCC	2 cut(s)	98, 360
BmgT120I	GGNCC	2 cut(s)	98, 360
BmiI	GGNNCC	3 cut(s)	70, 225, 264
BpiI	GAAGAC	2 cut(s)	138, 290
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	2 cut(s)	113, 220
BsaJI	CCNNGG	5 cut(s)	153, 363, 369, 447, 492
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 95, 159
Bse1I	ACTGG	2 cut(s)	75, 164
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	5 cut(s)	153, 363, 369, 447, 492
BseGI	GGATG	2 cut(s)	328, 439
BseLI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	38, 161
BseNI	ACTGG	2 cut(s)	75, 164
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	220, 469
BseYI	CCCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	68, 223
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BsmAI	GTCTC	3 cut(s)	113, 140, 220
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	368
Bso31I	GGTCTC	2 cut(s)	113, 220
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	5 cut(s)	93, 123, 274, 345, 451
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	46, 72, 236, 306
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	37, 162
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	70, 225, 264
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	2 cut(s)	68, 223
BspTNI	GGTCTC	2 cut(s)	113, 220
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	75, 164
BssECI	CCNNGG	5 cut(s)	153, 363, 369, 447, 492
BssMI	GATC	5 cut(s)	93, 123, 274, 345, 451
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	5 cut(s)	153, 363, 369, 447, 492
Bst4CI	ACNGT	4 cut(s)	181, 193, 388, 430
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	24, 170, 342
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	328, 439
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	5 cut(s)	96, 126, 277, 348, 454
BstMAI	GTCTC	3 cut(s)	113, 140, 220
BstMBI	GATC	5 cut(s)	93, 123, 274, 345, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	407
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	220, 469
BstV2I	GAAGAC	2 cut(s)	138, 290
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	328, 439
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	98, 360
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	2 cut(s)	349, 364
CviJI	RGCY	8 cut(s)	152, 187, 233, 239, 254, 265, 368, 380
CviKI_1	RGCY	8 cut(s)	152, 187, 233, 239, 254, 265, 368, 380
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	3 cut(s)	24, 170, 342
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	5 cut(s)	95, 125, 276, 347, 453
DpnII	GATC	5 cut(s)	93, 123, 274, 345, 451
EaeI	YGGCCR	1 cut(s)	366
Eco130I	CCWWGG	5 cut(s)	153, 363, 369, 447, 492
Eco31I	GGTCTC	2 cut(s)	113, 220
Eco47I	GGWCC	2 cut(s)	98, 360
Eco57I	CTGAAG	2 cut(s)	213, 278
EcoT14I	CCWWGG	5 cut(s)	153, 363, 369, 447, 492
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	5 cut(s)	153, 363, 369, 447, 492
FaeI	CATG	2 cut(s)	352, 367
FaiI	YATR	2 cut(s)	350, 365
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	348, 363
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	72, 234, 237, 458
FokI	GGATG	2 cut(s)	335, 446
Fsp4HI	GCNGC	4 cut(s)	72, 234, 237, 458
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	72, 234, 237, 458
GsaI	CCCAGC	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	352, 367
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	174, 199, 487
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	43, 169, 181, 400
Hpy166II	GTNNAC	2 cut(s)	40, 426
Hpy188I	TCNGA	3 cut(s)	128, 171, 198
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	40, 426
HpyAV	CCTTC	5 cut(s)	157, 205, 237, 253, 385
HpyCH4III	ACNGT	4 cut(s)	181, 193, 388, 430
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	3 cut(s)	24, 170, 342
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	352, 367
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	93, 123, 274, 345, 451
LmnI	GCTCC	2 cut(s)	91, 262
Lsp1109I	GCAGC	2 cut(s)	220, 469
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	49, 175, 308
MalI	GATC	5 cut(s)	95, 125, 276, 347, 453
MboI	GATC	5 cut(s)	93, 123, 274, 345, 451
MboII	GAAGA	4 cut(s)	133, 143, 295, 301
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	368
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	5 cut(s)	15, 50, 55, 92, 111
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	233, 306
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	93, 123, 274, 345, 451
NlaIII	CATG	2 cut(s)	352, 367
NlaIV	GGNNCC	3 cut(s)	70, 225, 264
NmuCI	GTSAC	2 cut(s)	49, 175
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	199, 487
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	73, 235, 238, 459
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	70, 225, 264
PspPI	GGNCC	2 cut(s)	98, 360
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SatI	GCNGC	4 cut(s)	72, 234, 237, 458
Sau3AI	GATC	5 cut(s)	93, 123, 274, 345, 451
Sau96I	GGNCC	2 cut(s)	98, 360
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	7 cut(s)	30, 45, 66, 189, 216, 235, 362
SfcI	CTRYAG	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	2 cut(s)	98, 360
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	46, 72, 236, 306
SspDI	GGCGCC	1 cut(s)	68
StyI	CCWWGG	5 cut(s)	153, 363, 369, 447, 492
TaaI	ACNGT	4 cut(s)	181, 193, 388, 430
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	15, 33
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	330
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	2 cut(s)	74, 239
TfiI	GAWTC	2 cut(s)	199, 487
TseFI	GTSAC	2 cut(s)	49, 175
TseI	GCWGC	2 cut(s)	233, 457
Tsp45I	GTSAC	2 cut(s)	49, 175
TspDTI	ATGAA	2 cut(s)	306, 365
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	98, 360
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.