Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002522.1

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

18778 .. 19101

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002522.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggcgctaaagttggatccctcgcaggtcgttgaagtcttcgtccgcttcaccggtggtgaagtcggcgcggcgagtaccctggctcccaagattggtcctctcggtctctccccaaagaagatcgcagaagacatcacgaaggagacaaccaaggaatggaagggtctacgtgtcactgccaaggtcaccgtgcagaaccgtgaagccaagatctcggtggttccctccaccgccgcccttgtcatcaaggccctcaaccagcccgagcacgaccgcaagaaggtcaagaacgtcaagcacagcagcagcatgttaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

107

Amino Acids

11.6

Weight (kDa)

10.12

Isoelectric Point (pI)

21.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	169
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	46, 71, 234, 237, 277
AclWI	GGATC	2 cut(s)	11, 24
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
AflIII	ACRYGT	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	113, 140
AlwI	GGATC	2 cut(s)	11, 24
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	306, 309
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	7, 71
AspS9I	GGNCC	2 cut(s)	98, 253
AsuHPI	GGTGA	3 cut(s)	43, 71, 181
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	31, 138
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	113, 140
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	16
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	4 cut(s)	72, 237, 307, 310
BlsI	GCNGC	4 cut(s)	73, 238, 308, 311
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	98, 253
BmiI	GGNNCC	3 cut(s)	18, 87, 225
BmrFI	CCNGG	1 cut(s)	83
BpiI	GAAGAC	2 cut(s)	31, 138
BsaAI	YACGTR	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	81, 153, 183
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 159, 283
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	81, 153, 183
BseLI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BsmAI	GTCTC	2 cut(s)	113, 140
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	16, 123, 213
BspACI	CCGC	5 cut(s)	46, 71, 234, 237, 277
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	18, 87, 225
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	11, 24
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	81, 153, 183
BssMI	GATC	3 cut(s)	16, 123, 213
BssT1I	CCWWGG	2 cut(s)	153, 183
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	193, 203
BstBAI	YACGTR	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 71
BstKTI	GATC	3 cut(s)	19, 126, 216
BstMAI	GTCTC	2 cut(s)	113, 140
BstMBI	GATC	3 cut(s)	16, 123, 213
BstMCI	CGRYCG	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	2 cut(s)	31, 138
BstX2I	RGATCY	2 cut(s)	16, 213
BstYI	RGATCY	2 cut(s)	16, 213
BsuRI	GGCC	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	7, 71
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	98, 253
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	4 cut(s)	86, 209, 254, 265
CviKI_1	RGCY	4 cut(s)	86, 209, 254, 265
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	3 cut(s)	18, 125, 215
DpnII	GATC	3 cut(s)	16, 123, 213
Eco130I	CCWWGG	2 cut(s)	153, 183
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	153, 183
ErhI	CCWWGG	2 cut(s)	153, 183
FaeI	CATG	1 cut(s)	316
FaiI	YATR	1 cut(s)	314
FatI	CATG	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	72, 237, 307, 310
Fsp4HI	GCNGC	4 cut(s)	72, 237, 307, 310
GlaI	GCGC	2 cut(s)	6, 70
GluI	GCNGC	4 cut(s)	72, 237, 307, 310
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	7, 71
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	5, 69
HinP1I	GCGC	2 cut(s)	5, 69
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	43, 71, 181
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	139, 289
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	136, 157, 277
HpyCH4III	ACNGT	2 cut(s)	193, 203
HpyCH4IV	ACGT	2 cut(s)	172, 294
HpyCH4V	TGCA	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	172, 294
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	5, 69
Kzo9I	GATC	3 cut(s)	16, 123, 213
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	11, 67, 68, 95, 275
Lsp1109I	GCAGC	1 cut(s)	318
MaeII	ACGT	2 cut(s)	172, 294
MaeIII	GTNAC	2 cut(s)	175, 187
MalI	GATC	3 cut(s)	18, 125, 215
MboI	GATC	3 cut(s)	16, 123, 213
MboII	GAAGA	3 cut(s)	31, 133, 143
MflI	RGATCY	2 cut(s)	16, 213
MhlI	GDGCHC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	31, 111, 238, 266
MseI	TTAA	1 cut(s)	317
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	71
NdeII	GATC	3 cut(s)	16, 123, 213
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	18, 87, 225
NmuCI	GTSAC	2 cut(s)	175, 187
NspI	RCATGY	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	73, 238, 308, 311
Ppu21I	YACGTR	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	18, 87, 225
PspPI	GGNCC	2 cut(s)	98, 253
PsuI	RGATCY	2 cut(s)	16, 213
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	4 cut(s)	72, 237, 307, 310
Sau3AI	GATC	3 cut(s)	16, 123, 213
Sau96I	GGNCC	2 cut(s)	98, 253
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	30, 175, 189, 288, 297, 323
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	98
SsiI	CCGC	5 cut(s)	46, 71, 234, 237, 277
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	153, 183
TaaI	ACNGT	2 cut(s)	193, 203
TaiI	ACGT	2 cut(s)	175, 297
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	2 cut(s)	74, 239
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	2 cut(s)	175, 187
TseI	GCWGC	2 cut(s)	306, 309
Tsp45I	GTSAC	2 cut(s)	175, 187
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.