Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

34370166 .. 34372632

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCTCCCAAGTTCGACCCCTCCCAGGTCGTCGAGGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCAAAGGACTGGAAGGGCCTCCGCGTCACAGTCAAGCTCACCGTGCAGAACCGTCAGGCCAAGGTCTCCGTCGTCCCCTCCGCCGCAGCTCTCGTCATCAAGGCGCTGAAGGAGCCCGAGCGCGACCGGAAGAAGGTCAAGAACATCAAGCACAGCGGCAACATCAGCCTCGATGACGTCATCGAGATCGCAAAGATTATGAAAAACAGATCGATGGCTAAGGATTTGTCAGGGACTGTGAAGGAGATCCTCGGGACCTGTGTTTCTGTTGGGTGCACTGTCGACGGGAAGGACCCAAAGGACTTGCAGCAGGAGATTACCGATGGAGACGTTGAGGAGATTAGGAATCTGGATGCGTGGATGGAGGTAGTTCCTGCCCCTTTCATTTACCCACGAAAGACTTCGAATTCTCCTGGTTTAGAGACGATTCCAGAGGAAAGTGTTGAGGAAGGTGATGATGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

205

Amino Acids

22.2

Weight (kDa)

5.44

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	1.3e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	1.1e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	2 cut(s)	39, 432
AccII	CGCG	3 cut(s)	48, 174, 273
AciI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 306
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	2 cut(s)	69, 327
AfiI	CCNNNNNNNGG	3 cut(s)	25, 95, 283
AjnI	CCWGG	2 cut(s)	24, 562
AluBI	AGCT	2 cut(s)	187, 239
AluI	AGCT	2 cut(s)	187, 239
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	4 cut(s)	113, 220, 471, 566
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	391
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	2 cut(s)	266, 401
AoxI	GGCC	2 cut(s)	166, 207
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	236, 457
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	550
AspLEI	GCGC	3 cut(s)	71, 256, 273
AspS9I	GGNCC	4 cut(s)	98, 166, 405, 442
AsuHPI	GGTGA	3 cut(s)	43, 181, 614
AsuII	TTCGAA	1 cut(s)	554
AvaI	CYCGRG	2 cut(s)	266, 401
AvaII	GGWCC	3 cut(s)	98, 405, 442
BaeGI	GKGCMC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	248, 469
BccI	CCATC	3 cut(s)	358, 467, 505
BciT130I	CCWGG	2 cut(s)	26, 564
BcoDI	GTCTC	4 cut(s)	113, 220, 471, 566
BfoI	RGCGCY	2 cut(s)	72, 257
BisI	GCNGC	5 cut(s)	72, 234, 237, 307, 458
BlsI	GCNGC	5 cut(s)	73, 235, 238, 308, 459
Bme1390I	CCNGG	2 cut(s)	26, 564
Bme18I	GGWCC	3 cut(s)	98, 405, 442
BmeT110I	CYCGRG	2 cut(s)	266, 401
BmgT120I	GGNCC	4 cut(s)	98, 166, 405, 442
BmiI	GGNNCC	4 cut(s)	70, 264, 406, 444
BmrFI	CCNGG	2 cut(s)	26, 564
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	362
BsaHI	GRCGYC	2 cut(s)	69, 327
BsaI	GGTCTC	2 cut(s)	113, 220
BsaJI	CCNNGG	4 cut(s)	24, 141, 210, 400
BsaWI	WCCGGW	2 cut(s)	53, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 95, 283
Bse1I	ACTGG	2 cut(s)	75, 164
BseBI	CCWGG	2 cut(s)	26, 564
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	4 cut(s)	24, 141, 210, 400
BseGI	GGATG	2 cut(s)	508, 516
BseLI	CCNNNNNNNGG	3 cut(s)	25, 95, 283
BseNI	ACTGG	2 cut(s)	75, 164
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	248, 469
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	3 cut(s)	48, 174, 273
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	168, 209
BshNI	GGYRCC	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	2 cut(s)	266, 401
BsiSI	CCGG	2 cut(s)	54, 277
BslFI	GGGAC	3 cut(s)	209, 397, 418
BslI	CCNNNNNNNGG	3 cut(s)	25, 95, 283
BsmAI	GTCTC	4 cut(s)	113, 220, 471, 566
BsmBI	CGTCTC	2 cut(s)	471, 566
BsmFI	GGGAC	3 cut(s)	209, 397, 418
BsnI	GGCC	2 cut(s)	168, 209
Bso31I	GGTCTC	2 cut(s)	113, 220
BsoBI	CYCGRG	2 cut(s)	266, 401
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	267, 428
Bsp143I	GATC	5 cut(s)	93, 123, 336, 359, 396
BspACI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 306
BspANI	GGCC	2 cut(s)	168, 209
BspDI	ATCGAT	1 cut(s)	362
BspFNI	CGCG	3 cut(s)	48, 174, 273
BspLI	GGNNCC	4 cut(s)	70, 264, 406, 444
BspPI	GGATC	1 cut(s)	391
BspT104I	TTCGAA	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	2 cut(s)	113, 220
BsrI	ACTGG	2 cut(s)	75, 164
BssECI	CCNNGG	4 cut(s)	24, 141, 210, 400
BssMI	GATC	5 cut(s)	93, 123, 336, 359, 396
BssNI	GRCGYC	2 cut(s)	69, 327
BssT1I	CCWWGG	2 cut(s)	141, 210
Bst2UI	CCWGG	2 cut(s)	26, 564
Bst4CI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
BstACI	GRCGYC	2 cut(s)	69, 327
BstBI	TTCGAA	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	508, 516
BstFNI	CGCG	3 cut(s)	48, 174, 273
BstH2I	RGCGCY	2 cut(s)	72, 257
BstHHI	GCGC	3 cut(s)	71, 256, 273
BstKTI	GATC	5 cut(s)	96, 126, 339, 362, 399
BstMAI	GTCTC	4 cut(s)	113, 220, 471, 566
BstMBI	GATC	5 cut(s)	93, 123, 336, 359, 396
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 193, 262, 315
BstNI	CCWGG	2 cut(s)	26, 564
BstSCI	CCNGG	2 cut(s)	24, 562
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	3 cut(s)	48, 174, 273
BstV1I	GCAGC	2 cut(s)	248, 469
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	168, 209
BsuTUI	ATCGAT	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	508, 516
BtsIMutI	CAGTG	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	3 cut(s)	71, 256, 273
Cfr13I	GGNCC	4 cut(s)	98, 166, 405, 442
ClaI	ATCGAT	1 cut(s)	362
CseI	GACGC	2 cut(s)	37, 163
CviJI	RGCY	8 cut(s)	168, 187, 209, 239, 265, 318, 368, 613
CviKI_1	RGCY	8 cut(s)	168, 187, 209, 239, 265, 318, 368, 613
DdeI	CTNAG	1 cut(s)	369
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	5 cut(s)	95, 125, 338, 361, 398
DpnII	GATC	5 cut(s)	93, 123, 336, 359, 396
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	141, 210
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	2 cut(s)	113, 220
Eco47I	GGWCC	3 cut(s)	98, 405, 442
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	266, 401
EcoO109I	RGGNCCY	3 cut(s)	166, 405, 442
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	24, 562
EcoT14I	CCWWGG	2 cut(s)	141, 210
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	141, 210
Esp3I	CGTCTC	2 cut(s)	471, 566
FaiI	YATR	2 cut(s)	350, 616
FaqI	GGGAC	3 cut(s)	209, 397, 418
FblI	GTMKAC	2 cut(s)	39, 432
Fnu4HI	GCNGC	5 cut(s)	72, 234, 237, 307, 458
FokI	GGATG	2 cut(s)	515, 523
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	72, 234, 237, 307, 458
GlaI	GCGC	3 cut(s)	70, 255, 272
GluI	GCNGC	5 cut(s)	72, 234, 237, 307, 458
HaeII	RGCGCY	2 cut(s)	72, 257
HaeIII	GGCC	2 cut(s)	168, 209
HapII	CCGG	2 cut(s)	54, 277
HgaI	GACGC	2 cut(s)	37, 163
HhaI	GCGC	3 cut(s)	71, 256, 273
Hin1I	GRCGYC	2 cut(s)	69, 327
Hin6I	GCGC	3 cut(s)	69, 254, 271
HinP1I	GCGC	3 cut(s)	69, 254, 271
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	496, 577
HpaII	CCGG	2 cut(s)	54, 277
HphI	GGTGA	3 cut(s)	43, 181, 614
Hpy166II	GTNNAC	3 cut(s)	40, 426, 433
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	5 cut(s)	289, 334, 403, 500, 581
Hpy8I	GTNNAC	3 cut(s)	40, 426, 433
Hpy99I	CGWCG	3 cut(s)	35, 224, 437
HpyAV	CCTTC	6 cut(s)	157, 253, 277, 385, 433, 593
HpyCH4III	ACNGT	5 cut(s)	181, 193, 203, 388, 430
HpyCH4IV	ACGT	3 cut(s)	42, 327, 480
HpyCH4V	TGCA	3 cut(s)	196, 426, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 193, 262, 315
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	3 cut(s)	42, 327, 480
Hsp92I	GRCGYC	2 cut(s)	69, 327
HspAI	GCGC	3 cut(s)	69, 254, 271
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	93, 123, 336, 359, 396
LmnI	GCTCC	2 cut(s)	91, 262
Lsp1109I	GCAGC	2 cut(s)	248, 469
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	3 cut(s)	42, 327, 480
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	5 cut(s)	95, 125, 338, 361, 398
MboI	GATC	5 cut(s)	93, 123, 336, 359, 396
MboII	GAAGA	3 cut(s)	133, 143, 292
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	267, 428
MluCI	AATT	1 cut(s)	556
Mly113I	GGCGCC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	550
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	54, 277
MspR9I	CCNGG	2 cut(s)	26, 564
MvaI	CCWGG	2 cut(s)	26, 564
MvnI	CGCG	3 cut(s)	48, 174, 273
MwoI	GCNNNNNNNGC	4 cut(s)	66, 193, 262, 315
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	5 cut(s)	93, 123, 336, 359, 396
NlaIV	GGNNCC	4 cut(s)	70, 264, 406, 444
NmuCI	GTSAC	2 cut(s)	49, 175
NspV	TTCGAA	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	496, 577
PkrI	GCNGC	5 cut(s)	73, 235, 238, 308, 459
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	405, 442
Psp5II	RGGWCCY	2 cut(s)	405, 442
Psp6I	CCWGG	2 cut(s)	24, 562
PspGI	CCWGG	2 cut(s)	24, 562
PspN4I	GGNNCC	4 cut(s)	70, 264, 406, 444
PspPI	GGNCC	4 cut(s)	98, 166, 405, 442
PspPPI	RGGWCCY	2 cut(s)	405, 442
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	431
SatI	GCNGC	5 cut(s)	72, 234, 237, 307, 458
Sau3AI	GATC	5 cut(s)	93, 123, 336, 359, 396
Sau96I	GGNCC	4 cut(s)	98, 166, 405, 442
ScrFI	CCNGG	2 cut(s)	26, 564
SduI	GDGCHC	2 cut(s)	267, 428
SfaNI	GCATC	1 cut(s)	493
SfoI	GGCGCC	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	3 cut(s)	98, 405, 442
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	7 cut(s)	46, 72, 150, 172, 231, 234, 306
SspDI	GGCGCC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	24, 562
StyI	CCWWGG	2 cut(s)	141, 210
TaaI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
TaiI	ACGT	3 cut(s)	45, 330, 483
TaqI	TCGA	7 cut(s)	15, 33, 321, 333, 362, 432, 554
TaqII	GACCGA	2 cut(s)	86, 95
TasI	AATT	1 cut(s)	556
TauI	GCSGC	3 cut(s)	74, 236, 309
TfiI	GAWTC	2 cut(s)	496, 577
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	49, 175
TseI	GCWGC	2 cut(s)	236, 457
Tsp45I	GTSAC	2 cut(s)	49, 175
TspDTI	ATGAA	2 cut(s)	365, 523
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	3 cut(s)	98, 405, 442
XapI	RAATTY	1 cut(s)	556
XmiI	GTMKAC	2 cut(s)	39, 432
XmnI	GAANNNNTTC	1 cut(s)	550
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.