Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

7074367 .. 7075202

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G101700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCGAAGTTCGATCCCTCACAGGTCGTCGACGTCTACGTCCGAGTCACCGGCGGTGAAGTCGGCGCGGCGAGTTCGCTTGCTCCAAAGATCGGTCCTCTCGGTCTCTCCCCAAAGAAGATCGGAGAAGACATAGCCAAGGAGACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGTCAAGCTCACCGTCCAGAACAGGCAGGCCAAGGTCTCTGTGGTGCCGTCGGCCGCGGCGCTGGTCATCAAGGCTTTGAAGGAGCCCGAGCGCGACCGCAAGAAGACTAAGAACATCAAGCACAGTGGAAACATCTCTCTAGACGACGTCATCGAGATCGCCAAGATCATGAAGCACAGATCCATGGCCAAGGAGCTTGCCGGCACGGTGAAGGAGATTCTCGGCACCTGCGTATCCGTCGGGTGCACGGTCGACGGCAAGGACCCTAAGGATTTGCAACAGGAGATTGCCGATGGTGATGTTGAGATCCCTCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.77

Weight (kDa)

9.0

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	41
AatII	GACGTC	2 cut(s)	39, 330
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	223, 404
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	3 cut(s)	33, 39, 432
AccII	CGCG	3 cut(s)	71, 236, 273
AciI	CCGC	7 cut(s)	5, 57, 71, 150, 234, 236, 277
AclWI	GGATC	3 cut(s)	11, 354, 481
AcoI	YGGCCR	2 cut(s)	231, 366
AcyI	GRCGYC	2 cut(s)	36, 327
AfiI	CCNNNNNNNGG	2 cut(s)	95, 159
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	2 cut(s)	187, 376
AluI	AGCT	2 cut(s)	187, 376
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	3 cut(s)	113, 140, 220
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	3 cut(s)	11, 354, 481
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	207, 231, 366
ApaLI	GTGCAC	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	71, 241, 273
AspS9I	GGNCC	2 cut(s)	98, 442
AsuHPI	GGTGA	6 cut(s)	43, 71, 169, 181, 400, 488
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	98, 442
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	223, 404
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	138, 290
Bbv12I	GWGCWC	1 cut(s)	428
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	211, 451
BciVI	GTATCC	1 cut(s)	424
BcoDI	GTCTC	3 cut(s)	113, 140, 220
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	4 cut(s)	5, 72, 234, 237
BlsI	GCNGC	4 cut(s)	6, 73, 235, 238
Bme18I	GGWCC	2 cut(s)	98, 442
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	98, 442
BmiI	GGNNCC	4 cut(s)	225, 264, 406, 444
BpiI	GAAGAC	2 cut(s)	138, 290
BsaAI	YACGTR	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	36, 327
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	6 cut(s)	141, 153, 210, 234, 363, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 159
Bse118I	RCCGGY	2 cut(s)	53, 380
Bse1I	ACTGG	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	447
BseDI	CCNNGG	6 cut(s)	141, 153, 210, 234, 363, 369
BseLI	CCNNNNNNNGG	2 cut(s)	95, 159
BseNI	ACTGG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	428
BseX3I	CGGCCG	1 cut(s)	231
Bsh1236I	CGCG	3 cut(s)	71, 236, 273
Bsh1285I	CGRYCG	3 cut(s)	234, 277, 432
BshFI	GGCC	3 cut(s)	209, 233, 368
BshNI	GGYRCC	2 cut(s)	223, 404
BsiEI	CGRYCG	3 cut(s)	234, 277, 432
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	54, 381
BslI	CCNNNNNNNGG	2 cut(s)	95, 159
BsmAI	GTCTC	3 cut(s)	113, 140, 220
BsnI	GGCC	3 cut(s)	209, 233, 368
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	267, 428
Bsp143I	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	7 cut(s)	5, 57, 71, 150, 234, 236, 277
BspANI	GGCC	3 cut(s)	209, 233, 368
BspFNI	CGCG	3 cut(s)	71, 236, 273
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	225, 264, 406, 444
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	11, 354, 481
BspT107I	GGYRCC	2 cut(s)	223, 404
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrFI	RCCGGY	2 cut(s)	53, 380
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	2 cut(s)	53, 380
BssECI	CCNNGG	6 cut(s)	141, 153, 210, 234, 363, 369
BssMI	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
BssNI	GRCGYC	2 cut(s)	36, 327
BssT1I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
Bst4CI	ACNGT	5 cut(s)	181, 193, 305, 388, 430
BstACI	GRCGYC	2 cut(s)	36, 327
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	4 cut(s)	84, 207, 378, 382
BstDEI	CTNAG	2 cut(s)	288, 447
BstDSI	CCRYGG	2 cut(s)	234, 363
BstFNI	CGCG	3 cut(s)	71, 236, 273
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	3 cut(s)	71, 241, 273
BstKTI	GATC	7 cut(s)	19, 96, 126, 339, 348, 362, 489
BstMAI	GTCTC	3 cut(s)	113, 140, 220
BstMBI	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
BstMCI	CGRYCG	3 cut(s)	234, 277, 432
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	3 cut(s)	71, 236, 273
BstV2I	GAAGAC	2 cut(s)	138, 290
BstX2I	RGATCY	2 cut(s)	359, 486
BstYI	RGATCY	2 cut(s)	359, 486
BstZI	CGGCCG	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	209, 233, 368
BtgI	CCRYGG	2 cut(s)	234, 363
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	4 cut(s)	84, 207, 378, 382
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	3 cut(s)	71, 241, 273
Cfr10I	RCCGGY	2 cut(s)	53, 380
Cfr13I	GGNCC	2 cut(s)	98, 442
Cfr42I	CCGCGG	1 cut(s)	237
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	2 cut(s)	349, 364
CviJI	RGCY	9 cut(s)	140, 168, 187, 209, 233, 254, 265, 368, 376
CviKI_1	RGCY	9 cut(s)	140, 168, 187, 209, 233, 254, 265, 368, 376
DdeI	CTNAG	2 cut(s)	288, 447
DpnI	GATC	7 cut(s)	18, 95, 125, 338, 347, 361, 488
DpnII	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	231, 366
EagI	CGGCCG	1 cut(s)	231
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	2 cut(s)	98, 442
Eco52I	CGGCCG	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	442
EcoT14I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
FaeI	CATG	2 cut(s)	352, 367
FaiI	YATR	3 cut(s)	137, 350, 365
FatI	CATG	2 cut(s)	348, 363
FblI	GTMKAC	3 cut(s)	33, 39, 432
Fnu4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	3 cut(s)	70, 240, 272
GluI	GCNGC	4 cut(s)	5, 72, 234, 237
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	209, 233, 368
HapII	CCGG	2 cut(s)	54, 381
HhaI	GCGC	3 cut(s)	71, 241, 273
Hin1I	GRCGYC	2 cut(s)	36, 327
Hin1II	CATG	2 cut(s)	352, 367
Hin6I	GCGC	3 cut(s)	69, 239, 271
HinP1I	GCGC	3 cut(s)	69, 239, 271
HincII	GTYRAC	2 cut(s)	34, 433
HindII	GTYRAC	2 cut(s)	34, 433
HinfI	GANTC	2 cut(s)	48, 397
HpaII	CCGG	2 cut(s)	54, 381
HphI	GGTGA	6 cut(s)	43, 71, 169, 181, 400, 488
Hpy166II	GTNNAC	4 cut(s)	34, 40, 426, 433
Hpy188I	TCNGA	2 cut(s)	47, 128
Hpy188III	TCNNGA	5 cut(s)	196, 320, 334, 349, 494
Hpy8I	GTNNAC	4 cut(s)	34, 40, 426, 433
Hpy99I	CGWCG	6 cut(s)	35, 38, 232, 329, 422, 437
HpyAV	CCTTC	3 cut(s)	157, 253, 385
HpyCH4III	ACNGT	5 cut(s)	181, 193, 305, 388, 430
HpyCH4IV	ACGT	4 cut(s)	36, 42, 172, 327
HpyCH4V	TGCA	2 cut(s)	426, 457
HpyF3I	CTNAG	2 cut(s)	288, 447
HpySE526I	ACGT	4 cut(s)	36, 42, 172, 327
Hsp92I	GRCGYC	2 cut(s)	36, 327
Hsp92II	CATG	2 cut(s)	352, 367
HspAI	GCGC	3 cut(s)	69, 239, 271
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
LmnI	GCTCC	3 cut(s)	91, 262, 373
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	4 cut(s)	36, 42, 172, 327
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	7 cut(s)	18, 95, 125, 338, 347, 361, 488
MboI	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
MboII	GAAGA	3 cut(s)	133, 143, 295
MflI	RGATCY	2 cut(s)	359, 486
MhlI	GDGCHC	2 cut(s)	267, 428
MlsI	TGGCCA	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	31, 111, 501
Mox20I	TGGCCA	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	54, 381
MvnI	CGCG	3 cut(s)	71, 236, 273
NaeI	GCCGGC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	352, 367
NlaIV	GGNNCC	4 cut(s)	225, 264, 406, 444
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	49, 175
PagI	TCATGA	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 330, 408
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	6, 73, 235, 238
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	225, 264, 406, 444
PspPI	GGNCC	2 cut(s)	98, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	359, 486
PsyI	GACNNNGTC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	237
SalI	GTCGAC	2 cut(s)	32, 431
SatI	GCNGC	4 cut(s)	5, 72, 234, 237
Sau3AI	GATC	7 cut(s)	16, 93, 123, 336, 345, 359, 486
Sau96I	GGNCC	2 cut(s)	98, 442
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	267, 428
SetI	ASST	9 cut(s)	30, 39, 45, 175, 189, 216, 330, 378, 410
Sfr303I	CCGCGG	1 cut(s)	237
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	237
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	98, 442
SsiI	CCGC	7 cut(s)	5, 57, 71, 150, 234, 236, 277
SspMI	CTAG	1 cut(s)	320
StyI	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
TaaI	ACNGT	5 cut(s)	181, 193, 305, 388, 430
TaiI	ACGT	4 cut(s)	39, 45, 175, 330
TaqI	TCGA	5 cut(s)	15, 33, 333, 432, 495
TaqII	GACCGA	2 cut(s)	86, 95
TauI	GCSGC	4 cut(s)	7, 74, 236, 239
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	49, 175
Tsp45I	GTSAC	2 cut(s)	49, 175
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	98, 442
XbaI	TCTAGA	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	3 cut(s)	33, 39, 432
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	2 cut(s)	37, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.