Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

19809313 .. 19810520

Gene Structure 1208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGATGTGTACGTCCGTGTAACCGGAGGAGAAGTGGGAGCCGCCAGTTCTCTAGCTCCAAAGATCGGTCCTCTCGGTCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAAGAATGGAAAGGACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTAACCGTGGTTCCATCTGCTGCAGCTCTCGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGACCGTAAGAAGGTGAAGAACATTAAGCATAACGGTAACATCTCTTTCGATGATGTGACTGAGATTGCTAGGATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAGATTCTTGGAACGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCTAAGGATCTTCAGCAGGAGATTCAAGAAGGTGAGATTGAGATTCCTGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

166

Amino Acids

17.97

Weight (kDa)

9.05

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	6.5e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	1.7e-19	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccII	CGCG	1 cut(s)	140
AciI	CCGC	2 cut(s)	5, 72
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	259, 470
AhdI	GACNNNNNGTC	1 cut(s)	173
AluBI	AGCT	5 cut(s)	86, 187, 209, 239, 376
AluI	AGCT	5 cut(s)	86, 187, 209, 239, 376
Alw26I	GTCTC	4 cut(s)	113, 140, 267, 418
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	2 cut(s)	150, 353
ApeKI	GCWGC	2 cut(s)	233, 236
AspS9I	GGNCC	2 cut(s)	16, 98
AsuHPI	GGTGA	3 cut(s)	169, 298, 488
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	16, 98
AxyI	CCTNAGG	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	220, 248
BccI	CCATC	2 cut(s)	235, 428
BceAI	ACGGC	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	113, 140, 267, 418
BfaI	CTAG	3 cut(s)	83, 342, 357
BfmI	CTRYAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	4 cut(s)	5, 72, 234, 237
BlsI	GCNGC	4 cut(s)	6, 73, 235, 238
Bme18I	GGWCC	2 cut(s)	16, 98
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	16, 98
BmiI	GGNNCC	4 cut(s)	18, 70, 225, 264
BmsI	GCATC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	2 cut(s)	210, 369
BsaI	GGTCTC	2 cut(s)	113, 267
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 159, 283
Bse1I	ACTGG	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BseMII	CTCAG	3 cut(s)	324, 368, 483
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	220, 248
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	152, 355
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BsmAI	GTCTC	4 cut(s)	113, 140, 267, 418
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	152, 355
Bso31I	GGTCTC	2 cut(s)	113, 267
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	27, 93, 123, 359, 451
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	2 cut(s)	5, 72
BspANI	GGCC	2 cut(s)	152, 355
BspCNI	CTCAG	3 cut(s)	325, 369, 484
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	4 cut(s)	18, 70, 225, 264
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	459
BspTNI	GGTCTC	2 cut(s)	113, 267
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	5 cut(s)	27, 93, 123, 359, 451
Bst4CI	ACNGT	7 cut(s)	181, 193, 220, 278, 308, 388, 430
BstDEI	CTNAG	6 cut(s)	210, 333, 369, 377, 447, 492
BstDSI	CCRYGG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	5 cut(s)	30, 96, 126, 362, 454
BstMAI	GTCTC	4 cut(s)	113, 140, 267, 418
BstMBI	GATC	5 cut(s)	27, 93, 123, 359, 451
BstPI	GGTNACC	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	220, 248
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	359, 451
BstYI	RGATCY	2 cut(s)	359, 451
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	152, 355
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	426
BtuMI	TCGCGA	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	16, 98
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	6 cut(s)	210, 333, 369, 377, 447, 492
DpnI	GATC	5 cut(s)	29, 95, 125, 361, 453
DpnII	GATC	5 cut(s)	27, 93, 123, 359, 451
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	355
Eco31I	GGTCTC	2 cut(s)	113, 267
Eco47I	GGWCC	2 cut(s)	16, 98
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	140
FaiI	YATR	2 cut(s)	303, 350
FaqI	GGGAC	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FokI	GGATG	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	5, 72, 234, 237
FspBI	CTAG	3 cut(s)	83, 342, 357
GluI	GCNGC	4 cut(s)	5, 72, 234, 237
HaeIII	GGCC	2 cut(s)	152, 355
HapII	CCGG	1 cut(s)	54
HinfI	GANTC	4 cut(s)	199, 397, 466, 487
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	169, 298, 488
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	128, 198
Hpy188III	TCNNGA	3 cut(s)	139, 470, 491
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	253, 277, 467
HpyCH4III	ACNGT	7 cut(s)	181, 193, 220, 278, 308, 388, 430
HpyCH4IV	ACGT	2 cut(s)	42, 407
HpyCH4V	TGCA	2 cut(s)	236, 426
HpyF3I	CTNAG	6 cut(s)	210, 333, 369, 377, 447, 492
HpySE526I	ACGT	2 cut(s)	42, 407
Kzo9I	GATC	5 cut(s)	27, 93, 123, 359, 451
LmnI	GCTCC	4 cut(s)	68, 91, 262, 373
LpnPI	CCDG	5 cut(s)	38, 67, 88, 279, 446
Lsp1109I	GCAGC	2 cut(s)	220, 248
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	83, 342, 357
MaeII	ACGT	2 cut(s)	42, 407
MaeIII	GTNAC	5 cut(s)	49, 175, 214, 308, 328
MalI	GATC	5 cut(s)	29, 95, 125, 361, 453
MboI	GATC	5 cut(s)	27, 93, 123, 359, 451
MboII	GAAGA	4 cut(s)	133, 143, 301, 446
MflI	RGATCY	2 cut(s)	359, 451
MluCI	AATT	1 cut(s)	496
MnlI	CCTC	4 cut(s)	50, 111, 345, 384
MseI	TTAA	2 cut(s)	297, 499
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	140
NdeII	GATC	5 cut(s)	27, 93, 123, 359, 451
NlaIV	GGNNCC	4 cut(s)	18, 70, 225, 264
NmuCI	GTSAC	2 cut(s)	175, 328
NruI	TCGCGA	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	4 cut(s)	199, 397, 466, 487
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	6, 73, 235, 238
PspEI	GGTNACC	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	18, 70, 225, 264
PspPI	GGNCC	2 cut(s)	16, 98
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	359, 451
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	297, 499
SatI	GCNGC	4 cut(s)	5, 72, 234, 237
Sau3AI	GATC	5 cut(s)	27, 93, 123, 359, 451
Sau96I	GGNCC	2 cut(s)	16, 98
SfaNI	GCATC	1 cut(s)	413
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	16, 98
Sse9I	AATT	1 cut(s)	496
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	2 cut(s)	5, 72
SspMI	CTAG	3 cut(s)	83, 342, 357
StuI	AGGCCT	1 cut(s)	355
TaaI	ACNGT	7 cut(s)	181, 193, 220, 278, 308, 388, 430
TaiI	ACGT	2 cut(s)	45, 410
TaqI	TCGA	2 cut(s)	33, 321
TaqII	GACCGA	2 cut(s)	86, 95
TasI	AATT	1 cut(s)	496
TauI	GCSGC	2 cut(s)	7, 74
TfiI	GAWTC	4 cut(s)	199, 397, 466, 487
Tru1I	TTAA	2 cut(s)	297, 499
Tru9I	TTAA	2 cut(s)	297, 499
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	175, 328
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	2 cut(s)	175, 328
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	16, 98
XspI	CTAG	3 cut(s)	83, 342, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.