Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

2339390 .. 2340260

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCTCCCAAGTTCGACCCTTCCCAGGTCGTCGAAGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGACTGGAAGGGCATCCGCGTCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCTCCGTCGTCCCTTCCGCCTCTGCTCTGGTCATCAAGGCCCTTAAGGAGCCCGAGCGCCACCGGAAGAAGACAAAGAACATCACGCACACCGGCAACATCAGCCTTGATGATGTGATCGAGATCGCGAAGATCATGAAGAACAGGTCTATGGCAAAGGACCTGAGCGGCACTGTGAAGGAAATCCTCGGGACTTGTGTTTCGGTTGGGTGTACTGTGGATGGGAAGGACCCCAAGGACTTGCAGCAGGAGATCACCGACGGAGACGTTGAGGTTCCTCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

163

Amino Acids

17.38

Weight (kDa)

9.04

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 66	1.5e-16	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	71 - 140	1.4e-21	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccBSI	CCGCTC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	3 cut(s)	48, 162, 329
AciI	CCGC	5 cut(s)	46, 72, 160, 219, 369
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	25, 95, 147
AflII	CTTAAG	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	113, 208, 459
Ama87I	CYCGRG	2 cut(s)	254, 389
AoxI	GGCC	2 cut(s)	195, 240
ApeKI	GCWGC	1 cut(s)	445
ArsI	GACNNNNNNTTYG	4 cut(s)	27, 59, 385, 417
AspLEI	GCGC	2 cut(s)	71, 261
AspS9I	GGNCC	4 cut(s)	98, 241, 361, 430
AsuHPI	GGTGA	4 cut(s)	43, 157, 169, 448
AvaI	CYCGRG	2 cut(s)	254, 389
AvaII	GGWCC	3 cut(s)	98, 361, 430
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	138, 278
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	113, 208, 459
BfoI	RGCGCY	2 cut(s)	72, 262
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	3 cut(s)	72, 370, 446
BlsI	GCNGC	3 cut(s)	73, 371, 447
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	3 cut(s)	98, 361, 430
BmeT110I	CYCGRG	2 cut(s)	254, 389
BmgT120I	GGNCC	4 cut(s)	98, 241, 361, 430
BmiI	GGNNCC	4 cut(s)	70, 252, 432, 477
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	138, 278
Bpu10I	CCTNAGC	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	2 cut(s)	113, 208
BsaJI	CCNNGG	5 cut(s)	24, 141, 198, 388, 435
BsaWI	WCCGGW	2 cut(s)	53, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 95, 147
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	75, 152
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	24, 141, 198, 388, 435
BseGI	GGATG	2 cut(s)	156, 427
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	3 cut(s)	25, 95, 147
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	75, 152
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	3 cut(s)	48, 162, 329
BshFI	GGCC	2 cut(s)	197, 242
BshNI	GGYRCC	1 cut(s)	68
BsiHKCI	CYCGRG	2 cut(s)	254, 389
BsiSI	CCGG	3 cut(s)	54, 265, 294
BslFI	GGGAC	2 cut(s)	197, 406
BslI	CCNNNNNNNGG	3 cut(s)	25, 95, 147
BsmAI	GTCTC	3 cut(s)	113, 208, 459
BsmBI	CGTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	197, 406
BsnI	GGCC	2 cut(s)	197, 242
Bso31I	GGTCTC	2 cut(s)	113, 208
BsoBI	CYCGRG	2 cut(s)	254, 389
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
Bsp68I	TCGCGA	1 cut(s)	329
BspACI	CCGC	5 cut(s)	46, 72, 160, 219, 369
BspANI	GGCC	2 cut(s)	197, 242
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	3 cut(s)	48, 162, 329
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	4 cut(s)	70, 252, 432, 477
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	2 cut(s)	113, 208
BsrBI	CCGCTC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	75, 152
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	5 cut(s)	24, 141, 198, 388, 435
BssMI	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	3 cut(s)	141, 198, 435
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	5 cut(s)	169, 181, 191, 376, 418
BstACI	GRCGYC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	156, 427
BstFNI	CGCG	3 cut(s)	48, 162, 329
BstH2I	RGCGCY	2 cut(s)	72, 262
BstHHI	GCGC	2 cut(s)	71, 261
BstKTI	GATC	6 cut(s)	96, 126, 321, 327, 336, 456
BstMAI	GTCTC	3 cut(s)	113, 208, 459
BstMBI	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 303
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstUI	CGCG	3 cut(s)	48, 162, 329
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	138, 278
BsuRI	GGCC	2 cut(s)	197, 242
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	156, 427
BtsIMutI	CAGTG	1 cut(s)	372
BtuMI	TCGCGA	1 cut(s)	329
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	71, 261
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	4 cut(s)	98, 241, 361, 430
CseI	GACGC	2 cut(s)	37, 151
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	5 cut(s)	175, 197, 242, 253, 306
CviKI_1	RGCY	5 cut(s)	175, 197, 242, 253, 306
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	365
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	6 cut(s)	95, 125, 320, 326, 335, 455
DpnII	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	141, 198, 435
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	113, 208
Eco47I	GGWCC	3 cut(s)	98, 361, 430
Eco88I	CYCGRG	2 cut(s)	254, 389
EcoO109I	RGGNCCY	3 cut(s)	241, 361, 430
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	141, 198, 435
EcoT38I	GRGCYC	1 cut(s)	255
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	141, 198, 435
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	338, 353
FaqI	GGGAC	2 cut(s)	197, 406
FatI	CATG	1 cut(s)	336
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	72, 370, 446
FokI	GGATG	2 cut(s)	143, 434
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	3 cut(s)	72, 370, 446
GlaI	GCGC	2 cut(s)	70, 260
GluI	GCNGC	3 cut(s)	72, 370, 446
HaeII	RGCGCY	2 cut(s)	72, 262
HaeIII	GGCC	2 cut(s)	197, 242
HapII	CCGG	3 cut(s)	54, 265, 294
HgaI	GACGC	2 cut(s)	37, 151
HhaI	GCGC	2 cut(s)	71, 261
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	2 cut(s)	69, 259
HinP1I	GCGC	2 cut(s)	69, 259
HpaII	CCGG	3 cut(s)	54, 265, 294
HphI	GGTGA	4 cut(s)	43, 157, 169, 448
Hpy166II	GTNNAC	2 cut(s)	40, 414
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	6 cut(s)	184, 322, 328, 337, 391, 482
Hpy8I	GTNNAC	2 cut(s)	40, 414
Hpy99I	CGWCG	3 cut(s)	35, 212, 464
HpyAV	CCTTC	5 cut(s)	30, 145, 225, 373, 421
HpyCH4III	ACNGT	5 cut(s)	169, 181, 191, 376, 418
HpyCH4IV	ACGT	2 cut(s)	42, 468
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 303
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	2 cut(s)	42, 468
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	2 cut(s)	69, 259
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
LmnI	GCTCC	2 cut(s)	91, 250
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	2 cut(s)	42, 468
MaeIII	GTNAC	2 cut(s)	49, 163
MalI	GATC	6 cut(s)	95, 125, 320, 326, 335, 455
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
MboII	GAAGA	6 cut(s)	133, 143, 280, 283, 343, 352
MhlI	GDGCHC	1 cut(s)	255
Mly113I	GGCGCC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	15, 50, 55, 92, 111, 232, 398, 466, 489
MseI	TTAA	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	54, 265, 294
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	3 cut(s)	48, 162, 329
MwoI	GCNNNNNNNGC	2 cut(s)	66, 303
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	4 cut(s)	70, 252, 432, 477
NmuCI	GTSAC	2 cut(s)	49, 163
NruI	TCGCGA	1 cut(s)	329
PagI	TCATGA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	73, 371, 447
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	361, 430
Psp5II	RGGWCCY	2 cut(s)	361, 430
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	70, 252, 432, 477
PspPI	GGNCC	4 cut(s)	98, 241, 361, 430
PspPPI	RGGWCCY	2 cut(s)	361, 430
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	72, 370, 446
Sau3AI	GATC	6 cut(s)	93, 123, 318, 324, 333, 453
Sau96I	GGNCC	4 cut(s)	98, 241, 361, 430
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	9 cut(s)	30, 45, 66, 177, 204, 350, 366, 471, 477
SfaNI	GCATC	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	3 cut(s)	98, 361, 430
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	5 cut(s)	46, 72, 160, 219, 369
SspDI	GGCGCC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	141, 198, 435
TaaI	ACNGT	5 cut(s)	169, 181, 191, 376, 418
TaiI	ACGT	2 cut(s)	45, 471
TaqI	TCGA	3 cut(s)	15, 33, 321
TaqII	GACCGA	2 cut(s)	86, 95
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	2 cut(s)	74, 372
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	49, 163
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	49, 163
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	2 cut(s)	196, 477
TspRI	CASTG	1 cut(s)	379
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	3 cut(s)	98, 361, 430
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.