Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

63779357 .. 63779857

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCCAAGTTCGATCCCTCCCAGGTCGTCGAGGTCTACGTCCGCGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTTGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCAAAGAAGATCGGAGAAGACATCGCGAAGGAGACCGCCAAGGACTGGAAGGGTCTGCGCGTCACAGTCAAGCTCACCGTCCAGAACCGTCAGGCGAAGGTCTCGGTGGTCCCCTCCGCCGCCGCCCTGGTCATCAAGGCCCTCAAGGAGCCGGAGCGCGACCGCAAGAAGGTCAAGAACATCAAGCACAGCGGCAACATCAGCCTCGACGATGTCATTGAAATCGCTAAGATAATGAAGAACCGCTCGATGGCGAAGGACCTAAGTGGGACCGTTAAAGAGATCCTAGGCACCTGCGTCTCCGTTGGCTGCACGGTCGACGGCAAGGATCCGAAGGATCTGCAGCAGGAGATCACAGACGGCGATGTCGAGGTCCCTCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.78

Weight (kDa)

9.0

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	6.7e-21	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	68, 404
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	2 cut(s)	39, 432
AccII	CGCG	4 cut(s)	48, 140, 174, 273
AclWI	GGATC	5 cut(s)	11, 391, 437, 450, 459
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	4 cut(s)	95, 159, 283, 364
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	24, 240
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	4 cut(s)	113, 140, 220, 418
AlwI	GGATC	5 cut(s)	11, 391, 437, 450, 459
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	423, 457
AspA2I	CCTAGG	1 cut(s)	400
AspLEI	GCGC	3 cut(s)	71, 174, 273
AspS9I	GGNCC	6 cut(s)	98, 223, 253, 373, 384, 487
AsuHPI	GGTGA	2 cut(s)	43, 181
AvaII	GGWCC	5 cut(s)	98, 223, 373, 384, 487
AvrII	CCTAGG	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	2 cut(s)	68, 404
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	410, 469
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	451, 490
BcgI	CGANNNNNNTGC	2 cut(s)	436, 470
BciT130I	CCWGG	2 cut(s)	26, 242
BcoDI	GTCTC	4 cut(s)	113, 140, 220, 418
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
BlnI	CCTAGG	1 cut(s)	400
BlsI	GCNGC	7 cut(s)	6, 73, 235, 238, 308, 425, 459
Bme1390I	CCNGG	2 cut(s)	26, 242
Bme18I	GGWCC	5 cut(s)	98, 223, 373, 384, 487
BmgT120I	GGNCC	6 cut(s)	98, 223, 253, 373, 384, 487
BmiI	GGNNCC	7 cut(s)	70, 225, 264, 385, 406, 444, 489
BmrFI	CCNGG	2 cut(s)	26, 242
BpiI	GAAGAC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	4 cut(s)	24, 153, 240, 400
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 159, 283, 364
Bse1I	ACTGG	2 cut(s)	75, 164
BseBI	CCWGG	2 cut(s)	26, 242
BseDI	CCNNGG	4 cut(s)	24, 153, 240, 400
BseLI	CCNNNNNNNGG	4 cut(s)	95, 159, 283, 364
BseNI	ACTGG	2 cut(s)	75, 164
BseXI	GCAGC	2 cut(s)	410, 469
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	4 cut(s)	48, 140, 174, 273
Bsh1285I	CGRYCG	2 cut(s)	277, 432
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	2 cut(s)	68, 404
BsiEI	CGRYCG	2 cut(s)	277, 432
BsiSI	CCGG	2 cut(s)	54, 266
BslFI	GGGAC	3 cut(s)	209, 397, 473
BslI	CCNNNNNNNGG	4 cut(s)	95, 159, 283, 364
BsmAI	GTCTC	4 cut(s)	113, 140, 220, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	3 cut(s)	209, 397, 473
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
Bsp143I	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
Bsp68I	TCGCGA	1 cut(s)	140
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	4 cut(s)	48, 140, 174, 273
BspLI	GGNNCC	7 cut(s)	70, 225, 264, 385, 406, 444, 489
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	5 cut(s)	11, 391, 437, 450, 459
BspT107I	GGYRCC	2 cut(s)	68, 404
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrBI	CCGCTC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	75, 164
BssECI	CCNNGG	4 cut(s)	24, 153, 240, 400
BssMI	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	153, 400
Bst2UI	CCWGG	2 cut(s)	26, 242
Bst4CI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	342, 377
BstFNI	CGCG	4 cut(s)	48, 140, 174, 273
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 174, 273
BstKTI	GATC	7 cut(s)	19, 96, 126, 399, 445, 454, 468
BstMAI	GTCTC	4 cut(s)	113, 140, 220, 418
BstMBI	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
BstMCI	CGRYCG	2 cut(s)	277, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 315
BstNI	CCWGG	2 cut(s)	26, 242
BstSCI	CCNGG	2 cut(s)	24, 240
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	4 cut(s)	48, 140, 174, 273
BstV1I	GCAGC	2 cut(s)	410, 469
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	3 cut(s)	396, 442, 451
BstYI	RGATCY	3 cut(s)	396, 442, 451
BsuRI	GGCC	1 cut(s)	254
BtgZI	GCGATG	2 cut(s)	121, 492
BtuMI	TCGCGA	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	3 cut(s)	71, 174, 273
Cfr13I	GGNCC	6 cut(s)	98, 223, 253, 373, 384, 487
CseI	GACGC	3 cut(s)	37, 163, 400
CviJI	RGCY	5 cut(s)	187, 254, 265, 318, 423
CviKI_1	RGCY	5 cut(s)	187, 254, 265, 318, 423
DdeI	CTNAG	2 cut(s)	342, 377
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	7 cut(s)	18, 95, 125, 398, 444, 453, 467
DpnII	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	153, 400
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	5 cut(s)	98, 223, 373, 384, 487
EcoO109I	RGGNCCY	3 cut(s)	253, 373, 487
EcoRII	CCWGG	2 cut(s)	24, 240
EcoT14I	CCWWGG	2 cut(s)	153, 400
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	153, 400
Esp3I	CGTCTC	1 cut(s)	418
FaqI	GGGAC	3 cut(s)	209, 397, 473
FblI	GTMKAC	2 cut(s)	39, 432
Fnu4HI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
Fsp4HI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	3 cut(s)	70, 173, 272
GluI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	54, 266
HgaI	GACGC	3 cut(s)	37, 163, 400
HhaI	GCGC	3 cut(s)	71, 174, 273
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	3 cut(s)	69, 172, 271
HinP1I	GCGC	3 cut(s)	69, 172, 271
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	54, 266
HphI	GGTGA	2 cut(s)	43, 181
Hpy166II	GTNNAC	2 cut(s)	40, 433
Hpy188I	TCNGA	2 cut(s)	128, 447
Hpy188III	TCNNGA	4 cut(s)	139, 196, 289, 494
Hpy8I	GTNNAC	2 cut(s)	40, 433
Hpy99I	CGWCG	3 cut(s)	35, 326, 437
HpyAV	CCTTC	6 cut(s)	136, 157, 205, 277, 364, 442
HpyCH4III	ACNGT	5 cut(s)	181, 193, 203, 388, 430
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	426, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 315
HpyF3I	CTNAG	2 cut(s)	342, 377
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	3 cut(s)	69, 172, 271
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
LmnI	GCTCC	3 cut(s)	91, 262, 268
Lsp1109I	GCAGC	2 cut(s)	410, 469
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	7 cut(s)	18, 95, 125, 398, 444, 453, 467
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
MboII	GAAGA	3 cut(s)	133, 143, 364
MflI	RGATCY	3 cut(s)	396, 442, 451
Mly113I	GGCGCC	1 cut(s)	69
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	54, 266
MspR9I	CCNGG	2 cut(s)	26, 242
MvaI	CCWGG	2 cut(s)	26, 242
MvnI	CGCG	4 cut(s)	48, 140, 174, 273
MwoI	GCNNNNNNNGC	2 cut(s)	66, 315
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
NlaIV	GGNNCC	7 cut(s)	70, 225, 264, 385, 406, 444, 489
NmuCI	GTSAC	2 cut(s)	49, 175
NruI	TCGCGA	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 480
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	6, 73, 235, 238, 308, 425, 459
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	373, 487
Psp5II	RGGWCCY	2 cut(s)	373, 487
Psp6I	CCWGG	2 cut(s)	24, 240
PspGI	CCWGG	2 cut(s)	24, 240
PspN4I	GGNNCC	7 cut(s)	70, 225, 264, 385, 406, 444, 489
PspPI	GGNCC	6 cut(s)	98, 223, 253, 373, 384, 487
PspPPI	RGGWCCY	2 cut(s)	373, 487
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	3 cut(s)	396, 442, 451
PsyI	GACNNNGTC	1 cut(s)	326
RruI	TCGCGA	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	7 cut(s)	5, 72, 234, 237, 307, 424, 458
Sau3AI	GATC	7 cut(s)	16, 93, 123, 396, 442, 451, 465
Sau96I	GGNCC	6 cut(s)	98, 223, 253, 373, 384, 487
ScrFI	CCNGG	2 cut(s)	26, 242
SfcI	CTRYAG	1 cut(s)	455
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	5 cut(s)	98, 223, 373, 384, 487
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	24, 240
StyI	CCWWGG	2 cut(s)	153, 400
TaaI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	7 cut(s)	15, 33, 321, 362, 432, 483, 495
TaqII	GACCGA	2 cut(s)	86, 95
TauI	GCSGC	5 cut(s)	7, 74, 236, 239, 309
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	49, 175
TseI	GCWGC	2 cut(s)	423, 457
Tsp45I	GTSAC	2 cut(s)	49, 175
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	5 cut(s)	98, 223, 373, 384, 487
XmaJI	CCTAGG	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	39, 432
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.