Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

19052994 .. 19053560

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1118900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCTCCCAAATTCGACCCTTCTCAGGTCGTCGATGTCTACGTCCGTGTAACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTCGCTCCCAAGATCGGTCCTTTGGGTCTCTCCCCCAAAAAGATCGGAGAAGATATCGCTAAAGAGACTGCCAAGGACTGGAAGGGCCTGAGAGTCACCGTCAAGCTCACCGTGCAGAATCGTCAGGCCAAGGTCTCCGTCGTCCCCTCCGCCGCAGCGCTCGTCATCAAGGCGTTGAAGGAGCCGGAGCGCGACAGGAAGAAGACTAAGAACATCAAGCACAGTGGGAACATTTCGTTGGACGACGTGATCGAGATTGCTAAGGTGATGAGGAACAGGTCCATGGCGAAGGAGTTGGCCGGGACCGTGAAGGAGATTCTGGGCACTTGCGTTTCTGTAGGGTGCACCGTAGATGGCAAGGACCCGAAGGATCTTCAGCAGGAGATTGCCGACGGTGATGTCGAAATTCCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.77

Weight (kDa)

9.02

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	3.1e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	72, 231, 234
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	11, 486
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	69
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	3 cut(s)	113, 140, 220
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	459
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	3 cut(s)	166, 207, 378
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	11, 486
AspLEI	GCGC	3 cut(s)	71, 241, 273
AspS9I	GGNCC	5 cut(s)	98, 166, 360, 384, 442
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	4 cut(s)	169, 181, 358, 488
AvaII	GGWCC	4 cut(s)	98, 360, 384, 442
BaeGI	GKGCMC	2 cut(s)	407, 428
BanI	GGYRCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	113, 140, 220
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	2 cut(s)	72, 242
BisI	GCNGC	3 cut(s)	72, 234, 237
BlsI	GCNGC	3 cut(s)	73, 235, 238
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	4 cut(s)	98, 360, 384, 442
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	5 cut(s)	98, 166, 360, 384, 442
BmiI	GGNNCC	4 cut(s)	70, 264, 385, 444
BmrFI	CCNGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	2 cut(s)	113, 220
BsaJI	CCNNGG	4 cut(s)	153, 210, 363, 492
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 95, 159
Bse1I	ACTGG	2 cut(s)	75, 164
BseDI	CCNNGG	4 cut(s)	153, 210, 363, 492
BseLI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BseMII	CTCAG	2 cut(s)	38, 161
BseNI	ACTGG	2 cut(s)	75, 164
BseSI	GKGCMC	2 cut(s)	407, 428
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	3 cut(s)	168, 209, 380
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	3 cut(s)	54, 266, 381
BslFI	GGGAC	2 cut(s)	209, 397
BslI	CCNNNNNNNGG	3 cut(s)	25, 95, 159
BsmAI	GTCTC	3 cut(s)	113, 140, 220
BsmFI	GGGAC	2 cut(s)	209, 397
BsnI	GGCC	3 cut(s)	168, 209, 380
Bso31I	GGTCTC	2 cut(s)	113, 220
Bsp1286I	GDGCHC	2 cut(s)	407, 428
Bsp143I	GATC	4 cut(s)	93, 123, 330, 451
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	3 cut(s)	72, 231, 234
BspANI	GGCC	3 cut(s)	168, 209, 380
BspCNI	CTCAG	2 cut(s)	37, 162
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	70, 264, 385, 444
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	2 cut(s)	113, 220
BsrI	ACTGG	2 cut(s)	75, 164
BssECI	CCNNGG	4 cut(s)	153, 210, 363, 492
BssMI	GATC	4 cut(s)	93, 123, 330, 451
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	4 cut(s)	153, 210, 363, 492
Bst4CI	ACNGT	6 cut(s)	181, 193, 305, 388, 430, 476
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	24, 170, 288, 342
BstDSI	CCRYGG	1 cut(s)	363
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	2 cut(s)	72, 242
BstHHI	GCGC	3 cut(s)	71, 241, 273
BstKTI	GATC	4 cut(s)	96, 126, 333, 454
BstMAI	GTCTC	3 cut(s)	113, 140, 220
BstMBI	GATC	4 cut(s)	93, 123, 330, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 193
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	2 cut(s)	407, 428
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	168, 209, 380
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	3 cut(s)	71, 241, 273
Cfr13I	GGNCC	5 cut(s)	98, 166, 360, 384, 442
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	5 cut(s)	168, 187, 209, 265, 380
CviKI_1	RGCY	5 cut(s)	168, 187, 209, 265, 380
DdeI	CTNAG	4 cut(s)	24, 170, 288, 342
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	4 cut(s)	95, 125, 332, 453
DpnII	GATC	4 cut(s)	93, 123, 330, 451
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	4 cut(s)	153, 210, 363, 492
Eco31I	GGTCTC	2 cut(s)	113, 220
Eco32I	GATATC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	98, 360, 384, 442
Eco47III	AGCGCT	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	166, 442
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	4 cut(s)	153, 210, 363, 492
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	4 cut(s)	153, 210, 363, 492
FaeI	CATG	1 cut(s)	367
FaiI	YATR	1 cut(s)	365
FaqI	GGGAC	2 cut(s)	209, 397
FatI	CATG	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	72, 234, 237
Fsp4HI	GCNGC	3 cut(s)	72, 234, 237
GlaI	GCGC	3 cut(s)	70, 240, 272
GluI	GCNGC	3 cut(s)	72, 234, 237
HaeII	RGCGCY	2 cut(s)	72, 242
HaeIII	GGCC	3 cut(s)	168, 209, 380
HapII	CCGG	3 cut(s)	54, 266, 381
HhaI	GCGC	3 cut(s)	71, 241, 273
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	3 cut(s)	69, 239, 271
HinP1I	GCGC	3 cut(s)	69, 239, 271
HinfI	GANTC	3 cut(s)	174, 199, 397
HpaII	CCGG	3 cut(s)	54, 266, 381
HphI	GGTGA	4 cut(s)	169, 181, 358, 488
Hpy166II	GTNNAC	2 cut(s)	40, 426
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	2 cut(s)	40, 426
Hpy99I	CGWCG	4 cut(s)	35, 224, 329, 476
HpyAV	CCTTC	6 cut(s)	30, 157, 253, 364, 385, 442
HpyCH4III	ACNGT	6 cut(s)	181, 193, 305, 388, 430, 476
HpyCH4IV	ACGT	2 cut(s)	42, 327
HpyCH4V	TGCA	2 cut(s)	196, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 193
HpyF3I	CTNAG	4 cut(s)	24, 170, 288, 342
HpySE526I	ACGT	2 cut(s)	42, 327
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	3 cut(s)	69, 239, 271
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	93, 123, 330, 451
LmnI	GCTCC	3 cut(s)	91, 262, 268
Lsp1109I	GCAGC	1 cut(s)	248
MaeII	ACGT	2 cut(s)	42, 327
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	4 cut(s)	95, 125, 332, 453
MboI	GATC	4 cut(s)	93, 123, 330, 451
MboII	GAAGA	4 cut(s)	143, 292, 295, 446
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	407, 428
MluCI	AATT	2 cut(s)	11, 486
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	15, 50, 55, 238, 345
MspI	CCGG	3 cut(s)	54, 266, 381
MspR9I	CCNGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	66, 193
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	93, 123, 330, 451
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	4 cut(s)	70, 264, 385, 444
NmuCI	GTSAC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 330, 480
PfeI	GAWTC	2 cut(s)	199, 397
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	73, 235, 238
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	70, 264, 385, 444
PspPI	GGNCC	5 cut(s)	98, 166, 360, 384, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	451
SatI	GCNGC	3 cut(s)	72, 234, 237
Sau3AI	GATC	4 cut(s)	93, 123, 330, 451
Sau96I	GGNCC	5 cut(s)	98, 166, 360, 384, 442
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	2 cut(s)	407, 428
SetI	ASST	8 cut(s)	30, 45, 66, 189, 216, 330, 348, 362
SfcI	CTRYAG	1 cut(s)	417
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	4 cut(s)	98, 360, 384, 442
Sse9I	AATT	2 cut(s)	11, 486
SsiI	CCGC	3 cut(s)	72, 231, 234
SspDI	GGCGCC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	4 cut(s)	153, 210, 363, 492
TaaI	ACNGT	6 cut(s)	181, 193, 305, 388, 430, 476
TaiI	ACGT	2 cut(s)	45, 330
TaqI	TCGA	4 cut(s)	15, 33, 333, 483
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	11, 486
TauI	GCSGC	2 cut(s)	74, 236
TfiI	GAWTC	2 cut(s)	199, 397
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	2 cut(s)	35, 208
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	4 cut(s)	98, 360, 384, 442
XapI	RAATTY	2 cut(s)	11, 486
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.