Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

18205346 .. 18206183

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1097900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTTGAAAAGCCCAACAGAATAACCCAACAAAACCCAAGGACAATTACGTCATTTCCGTGTGCTCCACACAAAACCCTAGCTTCAGATGAACCTCTCTACAAAAACCACGCATTTCACTCACTCAGCCTCCTCCTCCTCCCTCCAAAACCCATACGCCCCCAAACCCAGAGCGCCGCCGAAGAATCCATGCCTCCCAAATTCGACCCCTCTCAGGTCGTCGATGTCTACGTCCGAGTCACCGGAGGCGAGGTCGGCGCCGCCAGTTCGCTCGCTCCCAAGATTGGTCCTCTGGGTCTCTCCCCCAAAAAGATCGGAGAAGACATCGCTAAAGAGACCGCCAAGGACTGGAAGGGCCTGAGAGTCACCGTCAAGCTCACCGTGCAGAATCGTCAGGCCAAGGTCTCCGTCGTCCCCTCCGCCGCTGCTCTCGTCATCAAGGCGTTGAAGGAGCCGGAGCGCGACAGGAAGAAGACTAAGAACATCAAGCACAGCGGGAACATTTCGTTGGACGATGTGATTGAGATTGCTAAGGTGATGAGGAACAGGTCCATGGCGAAGGAGTTGGCCGGGACCGTGAAGGAGATTCTGGGCACCTGCGTTTCGGTCGGGTGCACCGTCGACGGCAAGGACCCGAAGGATCTGCAGCAGGAGATTGCCGACGGTGATGTTGAAATTCCCTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

230

Amino Acids

24.87

Weight (kDa)

9.15

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	76 - 133	1.6e-19	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	138 - 207	6.3e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	605
AasI	GACNNNNNNGTC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	605
AccB1I	GGYRCC	2 cut(s)	257, 593
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	228, 621
AccII	CGCG	1 cut(s)	462
AciI	CCGC	6 cut(s)	177, 261, 339, 420, 423, 495
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	200, 675
AcuI	CTGAAG	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	214, 284, 348
AgsI	TTSAA	3 cut(s)	8, 448, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	2 cut(s)	83, 376
AluI	AGCT	2 cut(s)	83, 376
Alw21I	GWGCWC	2 cut(s)	67, 617
Alw26I	GTCTC	3 cut(s)	302, 329, 409
Alw44I	GTGCAC	1 cut(s)	613
AlwI	GGATC	1 cut(s)	648
AoxI	GGCC	3 cut(s)	355, 396, 567
ApaLI	GTGCAC	1 cut(s)	613
ApeKI	GCWGC	2 cut(s)	425, 646
ApoI	RAATTY	2 cut(s)	200, 675
AspLEI	GCGC	3 cut(s)	176, 260, 462
AspS9I	GGNCC	5 cut(s)	287, 355, 549, 573, 631
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	5 cut(s)	232, 358, 370, 547, 677
AvaII	GGWCC	4 cut(s)	287, 549, 573, 631
BaeGI	GKGCMC	2 cut(s)	596, 617
BanI	GGYRCC	2 cut(s)	257, 593
BbsI	GAAGAC	2 cut(s)	327, 479
Bbv12I	GWGCWC	2 cut(s)	67, 617
BbvI	GCAGC	2 cut(s)	412, 658
BceAI	ACGGC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	302, 329, 409
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	644
BfoI	RGCGCY	2 cut(s)	177, 261
BfuAI	ACCTGC	1 cut(s)	605
BisI	GCNGC	5 cut(s)	177, 261, 423, 426, 647
BlsI	GCNGC	5 cut(s)	178, 262, 424, 427, 648
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	4 cut(s)	287, 549, 573, 631
BmgT120I	GGNCC	5 cut(s)	287, 355, 549, 573, 631
BmiI	GGNNCC	5 cut(s)	259, 453, 574, 595, 633
BmrFI	CCNGG	1 cut(s)	571
BpiI	GAAGAC	2 cut(s)	327, 479
Bpu10I	CCTNAGC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	3 cut(s)	302, 329, 409
BsaJI	CCNNGG	5 cut(s)	38, 342, 399, 552, 681
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 284, 348
Bse1I	ACTGG	2 cut(s)	264, 353
BseDI	CCNNGG	5 cut(s)	38, 342, 399, 552, 681
BseLI	CCNNNNNNNGG	3 cut(s)	214, 284, 348
BseMII	CTCAG	3 cut(s)	139, 227, 350
BseNI	ACTGG	2 cut(s)	264, 353
BseRI	GAGGAG	3 cut(s)	122, 125, 128
BseSI	GKGCMC	2 cut(s)	596, 617
BseXI	GCAGC	2 cut(s)	412, 658
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	609
BshFI	GGCC	3 cut(s)	357, 398, 569
BshNI	GGYRCC	2 cut(s)	257, 593
BsiEI	CGRYCG	1 cut(s)	609
BsiHKAI	GWGCWC	2 cut(s)	67, 617
BsiSI	CCGG	3 cut(s)	243, 455, 570
BslFI	GGGAC	2 cut(s)	398, 586
BslI	CCNNNNNNNGG	3 cut(s)	214, 284, 348
BsmAI	GTCTC	3 cut(s)	302, 329, 409
BsmFI	GGGAC	2 cut(s)	398, 586
BsnI	GGCC	3 cut(s)	357, 398, 569
Bso31I	GGTCTC	3 cut(s)	302, 329, 409
Bsp1286I	GDGCHC	3 cut(s)	67, 596, 617
Bsp143I	GATC	2 cut(s)	312, 640
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	6 cut(s)	177, 261, 339, 420, 423, 495
BspANI	GGCC	3 cut(s)	357, 398, 569
BspCNI	CTCAG	3 cut(s)	138, 226, 351
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	5 cut(s)	259, 453, 574, 595, 633
BspMAI	CTGCAG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	648
BspT107I	GGYRCC	2 cut(s)	257, 593
BspTNI	GGTCTC	3 cut(s)	302, 329, 409
BsrI	ACTGG	2 cut(s)	264, 353
BssECI	CCNNGG	5 cut(s)	38, 342, 399, 552, 681
BssMI	GATC	2 cut(s)	312, 640
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	5 cut(s)	38, 342, 399, 552, 681
Bst4CI	ACNGT	5 cut(s)	370, 382, 577, 619, 665
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	5 cut(s)	125, 213, 359, 477, 531
BstDSI	CCRYGG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	462
BstH2I	RGCGCY	2 cut(s)	177, 261
BstHHI	GCGC	3 cut(s)	176, 260, 462
BstKTI	GATC	2 cut(s)	315, 643
BstMAI	GTCTC	3 cut(s)	302, 329, 409
BstMBI	GATC	2 cut(s)	312, 640
BstMCI	CGRYCG	1 cut(s)	609
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 382
BstSCI	CCNGG	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	644
BstSLI	GKGCMC	2 cut(s)	596, 617
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	412, 658
BstV2I	GAAGAC	2 cut(s)	327, 479
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	357, 398, 569
BtgI	CCRYGG	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	3 cut(s)	176, 260, 462
Cfr13I	GGNCC	5 cut(s)	287, 355, 549, 573, 631
CviAII	CATG	2 cut(s)	190, 553
CviJI	RGCY	8 cut(s)	13, 83, 129, 357, 376, 398, 454, 569
CviKI_1	RGCY	8 cut(s)	13, 83, 129, 357, 376, 398, 454, 569
DdeI	CTNAG	5 cut(s)	125, 213, 359, 477, 531
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	314, 642
DpnII	GATC	2 cut(s)	312, 640
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	5 cut(s)	38, 342, 399, 552, 681
Eco31I	GGTCTC	3 cut(s)	302, 329, 409
Eco47I	GGWCC	4 cut(s)	287, 549, 573, 631
Eco57I	CTGAAG	1 cut(s)	69
EcoO109I	RGGNCCY	2 cut(s)	355, 631
EcoT14I	CCWWGG	5 cut(s)	38, 342, 399, 552, 681
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	5 cut(s)	38, 342, 399, 552, 681
FaeI	CATG	2 cut(s)	193, 556
FaiI	YATR	3 cut(s)	155, 191, 554
FaqI	GGGAC	2 cut(s)	398, 586
FatI	CATG	2 cut(s)	189, 552
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	2 cut(s)	228, 621
Fnu4HI	GCNGC	5 cut(s)	177, 261, 423, 426, 647
Fsp4HI	GCNGC	5 cut(s)	177, 261, 423, 426, 647
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	175, 259, 461
GluI	GCNGC	5 cut(s)	177, 261, 423, 426, 647
HaeII	RGCGCY	2 cut(s)	177, 261
HaeIII	GGCC	3 cut(s)	357, 398, 569
HapII	CCGG	3 cut(s)	243, 455, 570
HhaI	GCGC	3 cut(s)	176, 260, 462
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	193, 556
Hin6I	GCGC	3 cut(s)	174, 258, 460
HinP1I	GCGC	3 cut(s)	174, 258, 460
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	185, 237, 363, 388, 586
HpaII	CCGG	3 cut(s)	243, 455, 570
HphI	GGTGA	5 cut(s)	232, 358, 370, 547, 677
Hpy166II	GTNNAC	3 cut(s)	229, 615, 622
Hpy188I	TCNGA	3 cut(s)	88, 236, 317
Hpy8I	GTNNAC	3 cut(s)	229, 615, 622
Hpy99I	CGWCG	5 cut(s)	224, 413, 623, 626, 665
HpyAV	CCTTC	5 cut(s)	346, 442, 553, 574, 631
HpyCH4III	ACNGT	5 cut(s)	370, 382, 577, 619, 665
HpyCH4IV	ACGT	2 cut(s)	50, 231
HpyCH4V	TGCA	3 cut(s)	385, 615, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 382
HpyF3I	CTNAG	5 cut(s)	125, 213, 359, 477, 531
HpySE526I	ACGT	2 cut(s)	50, 231
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	193, 556
HspAI	GCGC	3 cut(s)	174, 258, 460
KasI	GGCGCC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	312, 640
LmnI	GCTCC	4 cut(s)	70, 280, 451, 457
Lsp1109I	GCAGC	2 cut(s)	412, 658
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	50, 231
MaeIII	GTNAC	2 cut(s)	238, 364
MalI	GATC	2 cut(s)	314, 642
MboI	GATC	2 cut(s)	312, 640
MboII	GAAGA	4 cut(s)	194, 332, 481, 484
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	3 cut(s)	67, 596, 617
MluCI	AATT	3 cut(s)	45, 200, 675
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	246, 372
MmeI	TCCRAC	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	2 cut(s)	425, 495
MspI	CCGG	3 cut(s)	243, 455, 570
MspR9I	CCNGG	1 cut(s)	571
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	255, 382
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	571
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	312, 640
NlaIII	CATG	2 cut(s)	193, 556
NlaIV	GGNNCC	5 cut(s)	259, 453, 574, 595, 633
NmuCI	GTSAC	2 cut(s)	238, 364
PaqCI	CACCTGC	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 228, 615
PfeI	GAWTC	3 cut(s)	185, 388, 586
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	178, 262, 424, 427, 648
PleI	GAGTC	2 cut(s)	245, 371
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	2 cut(s)	245, 371
PpuMI	RGGWCCY	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	631
PspN4I	GGNNCC	5 cut(s)	259, 453, 574, 595, 633
PspPI	GGNCC	5 cut(s)	287, 355, 549, 573, 631
PspPPI	RGGWCCY	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	620
SatI	GCNGC	5 cut(s)	177, 261, 423, 426, 647
Sau3AI	GATC	2 cut(s)	312, 640
Sau96I	GGNCC	5 cut(s)	287, 355, 549, 573, 631
SchI	GAGTC	2 cut(s)	246, 372
ScrFI	CCNGG	1 cut(s)	571
SduI	GDGCHC	3 cut(s)	67, 596, 617
SfcI	CTRYAG	1 cut(s)	644
SfoI	GGCGCC	1 cut(s)	259
SgrDI	CGTCGACG	1 cut(s)	620
SinI	GGWCC	4 cut(s)	287, 549, 573, 631
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	3 cut(s)	45, 200, 675
SsiI	CCGC	6 cut(s)	177, 261, 339, 420, 423, 495
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	569
StyI	CCWWGG	5 cut(s)	38, 342, 399, 552, 681
TaaI	ACNGT	5 cut(s)	370, 382, 577, 619, 665
TaiI	ACGT	2 cut(s)	53, 234
TaqI	TCGA	3 cut(s)	204, 222, 621
TaqII	GACCGA	1 cut(s)	595
TasI	AATT	3 cut(s)	45, 200, 675
TauI	GCSGC	3 cut(s)	179, 263, 425
TfiI	GAWTC	3 cut(s)	185, 388, 586
TseFI	GTSAC	2 cut(s)	238, 364
TseI	GCWGC	2 cut(s)	425, 646
Tsp45I	GTSAC	2 cut(s)	238, 364
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	2 cut(s)	48, 397
Van91I	CCANNNNNTGG	1 cut(s)	348
VneI	GTGCAC	1 cut(s)	613
VpaK11BI	GGWCC	4 cut(s)	287, 549, 573, 631
XapI	RAATTY	2 cut(s)	200, 675
XmiI	GTMKAC	2 cut(s)	228, 621
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.