Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Forward (+)

27514005 .. 27514679

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCCAAGTTCGATCCCTCTCAGGTCGTCGAGGTCTACGTCCGCGTCACCGGAGGTGAGGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGACCTCTCGGTCTCTCCCCAAAGAAGATCGGAGAAGACATCGCCAAGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTCTCCGTCGTCCCATCCGCCGCCGCTCTCGTCATCAAGGCCCTCAAGGAGCCCGAGCGTGACCGCAAGAAGACCAAGAACATCAAGCACACCGGCAACATCAGCCTCGATGACGTCATTGAGATCGCGAAGATCATGAAGAACAGGTCCATGGCCAAGGACCTGAGCGGCACCGTCAAGGAGATTCTCGGCACTTGCGTCTCGGTGGGGTGCACGGTTGACGGCAAGGACCCTAAGGATCTGCAACAGGAGATTTCCGATGGCGATGTGGAAGTCCCCCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.78

Weight (kDa)

9.0

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	4.3e-21	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	68, 383
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	2 cut(s)	239, 381
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	3 cut(s)	48, 174, 341
AclWI	GGATC	2 cut(s)	11, 459
AcoI	YGGCCR	1 cut(s)	366
AcyI	GRCGYC	2 cut(s)	69, 327
AfiI	CCNNNNNNNGG	2 cut(s)	95, 159
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	4 cut(s)	113, 140, 220, 418
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	2 cut(s)	11, 459
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	166, 207, 252, 366
ApaLI	GTGCAC	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	6 cut(s)	98, 166, 253, 360, 373, 442
AsuHPI	GGTGA	4 cut(s)	43, 71, 169, 181
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	4 cut(s)	98, 360, 373, 442
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	68, 383
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	138, 290
Bbv12I	GWGCWC	1 cut(s)	428
BccI	CCATC	2 cut(s)	235, 467
BceAI	ACGGC	1 cut(s)	451
BcoDI	GTCTC	4 cut(s)	113, 140, 220, 418
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	5 cut(s)	5, 72, 234, 237, 382
BlsI	GCNGC	5 cut(s)	6, 73, 235, 238, 383
Bme18I	GGWCC	4 cut(s)	98, 360, 373, 442
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	6 cut(s)	98, 166, 253, 360, 373, 442
BmiI	GGNNCC	4 cut(s)	70, 264, 385, 444
BpiI	GAAGAC	2 cut(s)	138, 290
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	69, 327
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	5 cut(s)	141, 153, 210, 363, 369
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 159
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	75, 164
Bse21I	CCTNAGG	1 cut(s)	447
BseDI	CCNNGG	5 cut(s)	141, 153, 210, 363, 369
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	95, 159
BseMII	CTCAG	2 cut(s)	38, 368
BseNI	ACTGG	2 cut(s)	75, 164
BseSI	GKGCMC	1 cut(s)	428
Bsh1236I	CGCG	3 cut(s)	48, 174, 341
BshFI	GGCC	4 cut(s)	168, 209, 254, 368
BshNI	GGYRCC	2 cut(s)	68, 383
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	54, 306
BslFI	GGGAC	2 cut(s)	209, 473
BslI	CCNNNNNNNGG	2 cut(s)	95, 159
BsmAI	GTCTC	4 cut(s)	113, 140, 220, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	2 cut(s)	209, 473
BsnI	GGCC	4 cut(s)	168, 209, 254, 368
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	267, 428
Bsp143I	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
Bsp19I	CCATGG	1 cut(s)	363
Bsp68I	TCGCGA	1 cut(s)	341
BspANI	GGCC	4 cut(s)	168, 209, 254, 368
BspCNI	CTCAG	2 cut(s)	37, 369
BspFNI	CGCG	3 cut(s)	48, 174, 341
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	70, 264, 385, 444
BspPI	GGATC	2 cut(s)	11, 459
BspT107I	GGYRCC	2 cut(s)	68, 383
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrBI	CCGCTC	2 cut(s)	239, 381
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	75, 164
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	5 cut(s)	141, 153, 210, 363, 369
BssMI	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
BssNI	GRCGYC	2 cut(s)	69, 327
BssT1I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
Bst4CI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
BstACI	GRCGYC	2 cut(s)	69, 327
BstDEI	CTNAG	3 cut(s)	24, 377, 447
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	3 cut(s)	48, 174, 341
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	6 cut(s)	19, 96, 126, 339, 348, 454
BstMAI	GTCTC	4 cut(s)	113, 140, 220, 418
BstMBI	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	428
BstUI	CGCG	3 cut(s)	48, 174, 341
BstV2I	GAAGAC	2 cut(s)	138, 290
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	168, 209, 254, 368
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	2 cut(s)	121, 492
BtsCI	GGATG	1 cut(s)	227
BtuMI	TCGCGA	1 cut(s)	341
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	98, 166, 253, 360, 373, 442
CseI	GACGC	3 cut(s)	37, 163, 400
CviAII	CATG	2 cut(s)	349, 364
CviJI	RGCY	7 cut(s)	168, 187, 209, 254, 265, 318, 368
CviKI_1	RGCY	7 cut(s)	168, 187, 209, 254, 265, 318, 368
DdeI	CTNAG	3 cut(s)	24, 377, 447
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	6 cut(s)	18, 95, 125, 338, 347, 453
DpnII	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	4 cut(s)	98, 360, 373, 442
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	4 cut(s)	166, 253, 373, 442
EcoT14I	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	2 cut(s)	352, 367
FaiI	YATR	2 cut(s)	350, 365
FaqI	GGGAC	2 cut(s)	209, 473
FatI	CATG	2 cut(s)	348, 363
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	5, 72, 234, 237, 382
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	5 cut(s)	5, 72, 234, 237, 382
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	5 cut(s)	5, 72, 234, 237, 382
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	168, 209, 254, 368
HapII	CCGG	2 cut(s)	54, 306
HgaI	GACGC	3 cut(s)	37, 163, 400
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	2 cut(s)	69, 327
Hin1II	CATG	2 cut(s)	352, 367
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	54, 306
HphI	GGTGA	4 cut(s)	43, 71, 169, 181
Hpy166II	GTNNAC	3 cut(s)	40, 426, 433
Hpy188I	TCNGA	3 cut(s)	98, 128, 472
Hpy188III	TCNNGA	3 cut(s)	196, 340, 349
Hpy8I	GTNNAC	3 cut(s)	40, 426, 433
Hpy99I	CGWCG	2 cut(s)	35, 224
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	5 cut(s)	181, 193, 203, 388, 430
HpyCH4IV	ACGT	2 cut(s)	42, 327
HpyCH4V	TGCA	2 cut(s)	426, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	3 cut(s)	24, 377, 447
HpySE526I	ACGT	2 cut(s)	42, 327
Hsp92I	GRCGYC	2 cut(s)	69, 327
Hsp92II	CATG	2 cut(s)	352, 367
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
LmnI	GCTCC	2 cut(s)	91, 262
MaeII	ACGT	2 cut(s)	42, 327
MaeIII	GTNAC	3 cut(s)	49, 175, 272
MalI	GATC	6 cut(s)	18, 95, 125, 338, 347, 453
MbiI	CCGCTC	2 cut(s)	239, 381
MboI	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
MboII	GAAGA	5 cut(s)	133, 143, 295, 355, 364
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	267, 428
MlsI	TGGCCA	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	368
Mly113I	GGCGCC	1 cut(s)	69
MnlI	CCTC	9 cut(s)	28, 31, 50, 55, 92, 111, 179, 266, 329
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	2 cut(s)	54, 306
MvnI	CGCG	3 cut(s)	48, 174, 341
MwoI	GCNNNNNNNGC	1 cut(s)	315
NarI	GGCGCC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
NlaIII	CATG	2 cut(s)	352, 367
NlaIV	GGNNCC	4 cut(s)	70, 264, 385, 444
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	3 cut(s)	49, 175, 272
NruI	TCGCGA	1 cut(s)	341
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 408
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	6, 73, 235, 238, 383
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	2 cut(s)	373, 442
Psp5II	RGGWCCY	2 cut(s)	373, 442
PspN4I	GGNNCC	4 cut(s)	70, 264, 385, 444
PspPI	GGNCC	6 cut(s)	98, 166, 253, 360, 373, 442
PspPPI	RGGWCCY	2 cut(s)	373, 442
PsuI	RGATCY	1 cut(s)	451
RruI	TCGCGA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	5, 72, 234, 237, 382
Sau3AI	GATC	6 cut(s)	16, 93, 123, 336, 345, 451
Sau96I	GGNCC	6 cut(s)	98, 166, 253, 360, 373, 442
SduI	GDGCHC	2 cut(s)	267, 428
SfoI	GGCGCC	1 cut(s)	70
SinI	GGWCC	4 cut(s)	98, 360, 373, 442
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SspDI	GGCGCC	1 cut(s)	68
StyI	CCWWGG	5 cut(s)	141, 153, 210, 363, 369
TaaI	ACNGT	5 cut(s)	181, 193, 203, 388, 430
TaiI	ACGT	2 cut(s)	45, 330
TaqI	TCGA	4 cut(s)	15, 33, 321, 495
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	5 cut(s)	7, 74, 236, 239, 384
TfiI	GAWTC	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	49, 175, 272
Tsp45I	GTSAC	3 cut(s)	49, 175, 272
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	159
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	4 cut(s)	98, 360, 373, 442
XmiI	GTMKAC	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.