Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

10665929 .. 10667019

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1118000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGCCAAAGTTCGATCCCTCACAGGTCGTCGACGTATACGTCCGCGTCACCGGCGGGGAGGTCGGCGCCGCCAGTTCCCTCGCCCCAAAGATCGGTCCCCTGGGTCTCTCCCCAAAGAAGATCGGAGAAGACATCGCCAAGGAGACCGCCAAGGACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACAGTCCAGAACAGGCAGGCTAAGGTCTCGGTGGTGCCGTCGGCGGCCGCCCTGGTCATCAAGGCCTTGAAGGAGCCCGAGCGCGATCGCAAGAAGACCAAGAACATCAAGCACAGCGGCAACATCTCCCTCGATGACGTCATCGAGATAGCCAAGGTTATGAGGAACAGATCCATGGCCAAGGAGCTCGCCGGCACGGTGAAGGAGATTCTCGGAACCTGCGTCTCGGTGGGCTGCACGGTCGACGGCAAGGACCCCAAGGATTTGCAACAGGAGATCGCCGACGGTGACGTCGAGATCCCTCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

167

Amino Acids

17.77

Weight (kDa)

9.02

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	13 - 70	8.4e-20	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	3.1e-20	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	41, 479
AatII	GACGTC	2 cut(s)	330, 483
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	2 cut(s)	68, 223
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	3 cut(s)	33, 39, 432
AccII	CGCG	3 cut(s)	48, 174, 273
AciI	CCGC	9 cut(s)	5, 46, 57, 72, 150, 172, 233, 237, 306
AclWI	GGATC	3 cut(s)	11, 354, 481
AcoI	YGGCCR	2 cut(s)	234, 366
AcyI	GRCGYC	3 cut(s)	69, 327, 480
AfiI	CCNNNNNNNGG	2 cut(s)	95, 159
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	102, 240
AluBI	AGCT	2 cut(s)	187, 376
AluI	AGCT	2 cut(s)	187, 376
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	4 cut(s)	113, 140, 220, 418
AlwI	GGATC	3 cut(s)	11, 354, 481
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	166, 234, 252, 366
ApeKI	GCWGC	1 cut(s)	423
AsiSI	GCGATCGC	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	71, 273
AspS9I	GGNCC	3 cut(s)	98, 166, 442
AsuHPI	GGTGA	4 cut(s)	43, 169, 400, 488
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	98, 442
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	2 cut(s)	68, 223
BanII	GRGCYC	2 cut(s)	267, 378
BbsI	GAAGAC	2 cut(s)	138, 290
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	211, 451
BciT130I	CCWGG	2 cut(s)	104, 242
BcoDI	GTCTC	4 cut(s)	113, 140, 220, 418
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	6 cut(s)	5, 72, 234, 237, 307, 424
BlsI	GCNGC	6 cut(s)	6, 73, 235, 238, 308, 425
Bme1390I	CCNGG	2 cut(s)	104, 242
Bme18I	GGWCC	2 cut(s)	98, 442
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	98, 166, 442
BmiI	GGNNCC	6 cut(s)	70, 100, 225, 264, 406, 444
BmrFI	CCNGG	2 cut(s)	104, 242
BpiI	GAAGAC	2 cut(s)	138, 290
Bpu10I	CCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	3 cut(s)	69, 327, 480
BsaI	GGTCTC	3 cut(s)	113, 140, 220
BsaJI	CCNNGG	9 cut(s)	102, 103, 141, 153, 240, 342, 363, 369, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 159
Bse118I	RCCGGY	2 cut(s)	53, 380
Bse1I	ACTGG	2 cut(s)	75, 164
BseBI	CCWGG	2 cut(s)	104, 242
BseDI	CCNNGG	9 cut(s)	102, 103, 141, 153, 240, 342, 363, 369, 447
BseLI	CCNNNNNNNGG	2 cut(s)	95, 159
BseNI	ACTGG	2 cut(s)	75, 164
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	3 cut(s)	48, 174, 273
Bsh1285I	CGRYCG	3 cut(s)	237, 277, 432
BshFI	GGCC	4 cut(s)	168, 236, 254, 368
BshNI	GGYRCC	2 cut(s)	68, 223
BsiEI	CGRYCG	3 cut(s)	237, 277, 432
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	54, 381
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	95, 159
BsmAI	GTCTC	4 cut(s)	113, 140, 220, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	168, 236, 254, 368
Bso31I	GGTCTC	3 cut(s)	113, 140, 220
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	267, 378
Bsp143I	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	9 cut(s)	5, 46, 57, 72, 150, 172, 233, 237, 306
BspANI	GGCC	4 cut(s)	168, 236, 254, 368
BspFNI	CGCG	3 cut(s)	48, 174, 273
BspLI	GGNNCC	6 cut(s)	70, 100, 225, 264, 406, 444
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	11, 354, 481
BspT107I	GGYRCC	2 cut(s)	68, 223
BspTNI	GGTCTC	3 cut(s)	113, 140, 220
BsrFI	RCCGGY	2 cut(s)	53, 380
BsrI	ACTGG	2 cut(s)	75, 164
BssAI	RCCGGY	2 cut(s)	53, 380
BssECI	CCNNGG	9 cut(s)	102, 103, 141, 153, 240, 342, 363, 369, 447
BssMI	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
BssNAI	GTATAC	1 cut(s)	40
BssNI	GRCGYC	3 cut(s)	69, 327, 480
BssT1I	CCWWGG	6 cut(s)	141, 153, 342, 363, 369, 447
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	104, 242
Bst4CI	ACNGT	5 cut(s)	181, 193, 388, 430, 476
BstACI	GRCGYC	3 cut(s)	69, 327, 480
BstC8I	GCNNGC	3 cut(s)	207, 378, 382
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	363
BstFNI	CGCG	3 cut(s)	48, 174, 273
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	71, 273
BstKTI	GATC	7 cut(s)	19, 96, 126, 277, 362, 468, 489
BstMAI	GTCTC	4 cut(s)	113, 140, 220, 418
BstMBI	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
BstMCI	CGRYCG	3 cut(s)	237, 277, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	2 cut(s)	104, 242
BstSCI	CCNGG	2 cut(s)	102, 240
BstUI	CGCG	3 cut(s)	48, 174, 273
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	2 cut(s)	138, 290
BstX2I	RGATCY	2 cut(s)	359, 486
BstYI	RGATCY	2 cut(s)	359, 486
BstZ17I	GTATAC	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	168, 236, 254, 368
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	3 cut(s)	207, 378, 382
CciNI	GCGGCCGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	71, 273
Cfr10I	RCCGGY	2 cut(s)	53, 380
Cfr13I	GGNCC	3 cut(s)	98, 166, 442
CseI	GACGC	3 cut(s)	37, 163, 400
CviAII	CATG	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	210
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	7 cut(s)	18, 95, 125, 276, 361, 467, 488
DpnII	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
DrdI	GACNNNNNNGTC	2 cut(s)	41, 479
DseDI	GACNNNNNNGTC	2 cut(s)	41, 479
EaeI	YGGCCR	2 cut(s)	234, 366
EagI	CGGCCG	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	376
EclXI	CGGCCG	1 cut(s)	234
Eco130I	CCWWGG	6 cut(s)	141, 153, 342, 363, 369, 447
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	2 cut(s)	267, 378
Eco31I	GGTCTC	3 cut(s)	113, 140, 220
Eco47I	GGWCC	2 cut(s)	98, 442
Eco52I	CGGCCG	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	2 cut(s)	166, 442
EcoRII	CCWGG	2 cut(s)	102, 240
EcoT14I	CCWWGG	6 cut(s)	141, 153, 342, 363, 369, 447
EcoT38I	GRGCYC	2 cut(s)	267, 378
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	6 cut(s)	141, 153, 342, 363, 369, 447
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	40, 350, 365
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	3 cut(s)	33, 39, 432
Fnu4HI	GCNGC	6 cut(s)	5, 72, 234, 237, 307, 424
FriOI	GRGCYC	2 cut(s)	267, 378
Fsp4HI	GCNGC	6 cut(s)	5, 72, 234, 237, 307, 424
GlaI	GCGC	2 cut(s)	70, 272
GluI	GCNGC	6 cut(s)	5, 72, 234, 237, 307, 424
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	168, 236, 254, 368
HapII	CCGG	2 cut(s)	54, 381
HgaI	GACGC	3 cut(s)	37, 163, 400
HhaI	GCGC	2 cut(s)	71, 273
Hin1I	GRCGYC	3 cut(s)	69, 327, 480
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	2 cut(s)	69, 271
HinP1I	GCGC	2 cut(s)	69, 271
HincII	GTYRAC	2 cut(s)	34, 433
HindII	GTYRAC	2 cut(s)	34, 433
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	54, 381
HphI	GGTGA	4 cut(s)	43, 169, 400, 488
Hpy166II	GTNNAC	3 cut(s)	34, 40, 433
Hpy188I	TCNGA	2 cut(s)	128, 404
Hpy188III	TCNNGA	4 cut(s)	196, 334, 484, 494
Hpy8I	GTNNAC	3 cut(s)	34, 40, 433
Hpy99I	CGWCG	6 cut(s)	35, 38, 232, 437, 476, 485
HpyAV	CCTTC	3 cut(s)	157, 253, 385
HpyCH4III	ACNGT	5 cut(s)	181, 193, 388, 430, 476
HpyCH4IV	ACGT	4 cut(s)	36, 42, 327, 480
HpyCH4V	TGCA	2 cut(s)	426, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	4 cut(s)	36, 42, 327, 480
Hsp92I	GRCGYC	3 cut(s)	69, 327, 480
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	2 cut(s)	69, 271
KasI	GGCGCC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
LmnI	GCTCC	2 cut(s)	262, 373
Lsp1109I	GCAGC	1 cut(s)	410
MaeII	ACGT	4 cut(s)	36, 42, 327, 480
MaeIII	GTNAC	3 cut(s)	49, 175, 476
MalI	GATC	7 cut(s)	18, 95, 125, 276, 361, 467, 488
MboI	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
MboII	GAAGA	3 cut(s)	133, 143, 295
MflI	RGATCY	2 cut(s)	359, 486
MhlI	GDGCHC	2 cut(s)	267, 378
MlsI	TGGCCA	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	368
Mly113I	GGCGCC	1 cut(s)	69
MnlI	CCTC	7 cut(s)	31, 55, 92, 179, 329, 345, 501
Mox20I	TGGCCA	1 cut(s)	368
MroNI	GCCGGC	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	54, 381
MspR9I	CCNGG	2 cut(s)	104, 242
MvaI	CCWGG	2 cut(s)	104, 242
MvnI	CGCG	3 cut(s)	48, 174, 273
MwoI	GCNNNNNNNGC	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	382
NarI	GGCGCC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	6 cut(s)	70, 100, 225, 264, 406, 444
NmuCI	GTSAC	3 cut(s)	49, 175, 476
NotI	GCGGCCGC	1 cut(s)	234
PasI	CCCWGGG	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	4 cut(s)	39, 224, 408, 480
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	6 cut(s)	6, 73, 235, 238, 308, 425
Ple19I	CGATCG	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	102, 240
PspGI	CCWGG	2 cut(s)	102, 240
PspN4I	GGNNCC	6 cut(s)	70, 100, 225, 264, 406, 444
PspPI	GGNCC	3 cut(s)	98, 166, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	359, 486
PvuI	CGATCG	1 cut(s)	277
RgaI	GCGATCGC	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	378
SalI	GTCGAC	2 cut(s)	32, 431
SatI	GCNGC	6 cut(s)	5, 72, 234, 237, 307, 424
Sau3AI	GATC	7 cut(s)	16, 93, 123, 274, 359, 465, 486
Sau96I	GGNCC	3 cut(s)	98, 166, 442
ScrFI	CCNGG	2 cut(s)	104, 242
SduI	GDGCHC	2 cut(s)	267, 378
SfaAI	GCGATCGC	1 cut(s)	277
SfoI	GGCGCC	1 cut(s)	70
SgfI	GCGATCGC	1 cut(s)	277
SgrAI	CRCCGGYG	1 cut(s)	53
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	98, 442
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	9 cut(s)	5, 46, 57, 72, 150, 172, 233, 237, 306
SspDI	GGCGCC	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	102, 240
StyI	CCWWGG	6 cut(s)	141, 153, 342, 363, 369, 447
TaaI	ACNGT	5 cut(s)	181, 193, 388, 430, 476
TaiI	ACGT	4 cut(s)	39, 45, 330, 483
TaqI	TCGA	7 cut(s)	15, 33, 321, 333, 432, 483, 495
TaqII	GACCGA	1 cut(s)	86
TauI	GCSGC	5 cut(s)	7, 74, 236, 239, 309
TfiI	GAWTC	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	49, 175, 476
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	3 cut(s)	49, 175, 476
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	98, 442
XmiI	GTMKAC	3 cut(s)	33, 39, 432
ZraI	GACGTC	2 cut(s)	328, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.