Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002456

Physical Location & Seq

Genomic Coordinates Reverse (-)

7345333 .. 7345818

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCGCCAAAGTTGGATCCCTCGCAGGTCGTTGAAGTCTTCGTCCGCGTCACCGGCGGCGAAGTCGGCGCGGCGAGTACCCTGGCTCCCAAGATCGGTCCTCTCGGTCTCTCCCCAAAGAAGATCGCAGAAGACATCGCGAAGGAGACAGCCAAGGAATGGAAGGGTCTGCGTGTCACTGCCAAGGTCACCGTGCAGAACCGTGAGGCCAAGATCTCGGTGGTTCCCTCCGCCGCCGCCCTTGTCATCAAGGCCCTCAACGAGCCCGAGCGCGACCGCAAGAAGGTCAAGAACGTCAAGCACAGCGGCAGCATTAGCCTGGCCGATGTGGAGAAGATAGCCACCGTCTTGCAGCCGAGATCCATGGCGAAAGGCCTGGACGGCACGGTGCGGGAGGTTCTCGGCACGTGCGTGTCCGTTGGCTGCTTGGTGAACGGAAGGGACCCTCGTGATGTGCAGAAGGCGCTGACCGCCGCCGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

161

Amino Acids

17.0

Weight (kDa)

9.73

Isoelectric Point (pI)

17.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	14 - 70	2e-17	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	75 - 144	2.1e-16	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37190 AT3G53430 AT5G60670
fragaria_vesca	FvH4_3g04190 FvH4_3g32230 FvH4_6g15870
malus_domestica	MD03G1118000.v1.1 MD04G1097900.v1.1 MD09G1186500.v1.1 MD11G1136300.v1.1 MD12G1118900.v1.1
prunus_persica	Prupe.6G101700_v2.0.a1 Prupe.6G236800_v2.0.a1
pyrus_communis	pycom02g15580 pycom04g09320 pycom11g11290 pycom12g11750
rosa_chinensis	RchiOBHm_Chr3g0469581 RchiOBHm_Chr5g0058851 RchiOBHm_Chr6g0252151 RchiOBHm_Chr6g0252181
rosa_laevigata	RLG00000024335 RLG00000035256
rosa_multiflora	Rmu_sc0002522.1_g000002 Rmu_sc0005457.1_g000011 Rmu_sc0005703.1_g000005 Rmu_sc0006483.1_g000005 Rmu_sc0039840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021530 Rroxscaffold_6G00411750
rosa_rugosa	Rorug03G0102700 Rorug05G0319700
rosa_samantha	Rh3AG152000 Rh3BG175700 Rh3DG199800 Rh5AG384500 Rh5BG396300 Rh5CG420200
rosa_wichuraiana	Rw3G014330 Rw5G036220 Rw6G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	480
AccII	CGCG	4 cut(s)	48, 71, 140, 273
AclWI	GGATC	3 cut(s)	11, 24, 354
AcoI	YGGCCR	1 cut(s)	321
AcvI	CACGTG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	3 cut(s)	81, 318, 375
AleI	CACNNNNGTG	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	113, 140
AlwI	GGATC	3 cut(s)	11, 24, 354
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	207, 252, 321, 373
ApeKI	GCWGC	3 cut(s)	309, 352, 423
AspLEI	GCGC	4 cut(s)	7, 71, 273, 466
AspS9I	GGNCC	3 cut(s)	98, 253, 442
AsuHPI	GGTGA	3 cut(s)	43, 181, 442
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	98, 442
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	447
BbrPI	CACGTG	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	31, 138
BbvI	GCAGC	3 cut(s)	321, 364, 410
BceAI	ACGGC	2 cut(s)	397, 461
BciT130I	CCWGG	3 cut(s)	83, 320, 377
BcoDI	GTCTC	2 cut(s)	113, 140
BfoI	RGCGCY	2 cut(s)	8, 467
BfuAI	ACCTGC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	9 cut(s)	58, 72, 234, 237, 307, 310, 353, 424, 474
BlsI	GCNGC	9 cut(s)	59, 73, 235, 238, 308, 311, 354, 425, 475
Bme1390I	CCNGG	3 cut(s)	83, 320, 377
Bme18I	GGWCC	2 cut(s)	98, 442
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	3 cut(s)	98, 253, 442
BmiI	GGNNCC	6 cut(s)	6, 18, 87, 225, 443, 444
BmrFI	CCNGG	3 cut(s)	83, 320, 377
BpiI	GAAGAC	2 cut(s)	31, 138
BsaAI	YACGTR	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	81, 153, 183, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 159, 283
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	3 cut(s)	83, 320, 377
BseDI	CCNNGG	4 cut(s)	81, 153, 183, 363
BseLI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BseXI	GCAGC	3 cut(s)	321, 364, 410
BsgI	GTGCAG	2 cut(s)	215, 476
Bsh1236I	CGCG	4 cut(s)	48, 71, 140, 273
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	209, 254, 323, 375
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	95, 159, 283
BsmAI	GTCTC	2 cut(s)	113, 140
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	209, 254, 323, 375
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	16, 93, 123, 213, 359
Bsp19I	CCATGG	1 cut(s)	363
Bsp68I	TCGCGA	1 cut(s)	140
BspANI	GGCC	4 cut(s)	209, 254, 323, 375
BspFNI	CGCG	4 cut(s)	48, 71, 140, 273
BspLI	GGNNCC	6 cut(s)	6, 18, 87, 225, 443, 444
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	3 cut(s)	11, 24, 354
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	81, 153, 183, 363
BssMI	GATC	5 cut(s)	16, 93, 123, 213, 359
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	3 cut(s)	153, 183, 363
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	83, 320, 377
Bst4CI	ACNGT	4 cut(s)	193, 203, 346, 388
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	363
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	4 cut(s)	48, 71, 140, 273
BstH2I	RGCGCY	2 cut(s)	8, 467
BstHHI	GCGC	4 cut(s)	7, 71, 273, 466
BstKTI	GATC	5 cut(s)	19, 96, 126, 216, 362
BstMAI	GTCTC	2 cut(s)	113, 140
BstMBI	GATC	5 cut(s)	16, 93, 123, 213, 359
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 66, 315, 381, 463, 470
BstNI	CCWGG	3 cut(s)	83, 320, 377
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	81, 318, 375
BstUI	CGCG	4 cut(s)	48, 71, 140, 273
BstV1I	GCAGC	3 cut(s)	321, 364, 410
BstV2I	GAAGAC	2 cut(s)	31, 138
BstX2I	RGATCY	3 cut(s)	16, 213, 359
BstYI	RGATCY	3 cut(s)	16, 213, 359
BsuRI	GGCC	4 cut(s)	209, 254, 323, 375
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
BtuMI	TCGCGA	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	16
CfoI	GCGC	4 cut(s)	7, 71, 273, 466
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	98, 253, 442
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	1 cut(s)	78
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	18, 95, 125, 215, 361
DpnII	GATC	5 cut(s)	16, 93, 123, 213, 359
EaeI	YGGCCR	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	153, 183, 363
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	98, 442
Eco72I	CACGTG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	187
EcoO109I	RGGNCCY	2 cut(s)	253, 442
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	81, 318, 375
EcoT14I	CCWWGG	3 cut(s)	153, 183, 363
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	153, 183, 363
FaeI	CATG	1 cut(s)	367
FaiI	YATR	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	9 cut(s)	58, 72, 234, 237, 307, 310, 353, 424, 474
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	9 cut(s)	58, 72, 234, 237, 307, 310, 353, 424, 474
GlaI	GCGC	4 cut(s)	6, 70, 272, 465
GluI	GCNGC	9 cut(s)	58, 72, 234, 237, 307, 310, 353, 424, 474
HaeII	RGCGCY	2 cut(s)	8, 467
HaeIII	GGCC	4 cut(s)	209, 254, 323, 375
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	4 cut(s)	7, 71, 273, 466
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	4 cut(s)	5, 69, 271, 464
HinP1I	GCGC	4 cut(s)	5, 69, 271, 464
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	43, 181, 442
Hpy166II	GTNNAC	2 cut(s)	433, 481
Hpy188III	TCNNGA	3 cut(s)	139, 289, 449
Hpy8I	GTNNAC	2 cut(s)	433, 481
HpyAV	CCTTC	5 cut(s)	136, 157, 277, 432, 454
HpyCH4III	ACNGT	4 cut(s)	193, 203, 346, 388
HpyCH4IV	ACGT	2 cut(s)	294, 407
HpyCH4V	TGCA	3 cut(s)	196, 352, 457
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 66, 315, 381, 463, 470
HpySE526I	ACGT	2 cut(s)	294, 407
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	4 cut(s)	5, 69, 271, 464
KasI	GGCGCC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	16, 93, 123, 213, 359
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	11, 67, 68, 95, 305, 332, 362, 389
Lsp1109I	GCAGC	3 cut(s)	321, 364, 410
MaeII	ACGT	2 cut(s)	294, 407
MaeIII	GTNAC	3 cut(s)	49, 175, 187
MalI	GATC	5 cut(s)	18, 95, 125, 215, 361
MboI	GATC	5 cut(s)	16, 93, 123, 213, 359
MboII	GAAGA	4 cut(s)	31, 133, 143, 346
MflI	RGATCY	3 cut(s)	16, 213, 359
MhlI	GDGCHC	1 cut(s)	267
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	7 cut(s)	31, 111, 199, 238, 266, 388, 456
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	83, 320, 377
MvaI	CCWGG	3 cut(s)	83, 320, 377
MvnI	CGCG	4 cut(s)	48, 71, 140, 273
MwoI	GCNNNNNNNGC	6 cut(s)	54, 66, 315, 381, 463, 470
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	16, 93, 123, 213, 359
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	6 cut(s)	6, 18, 87, 225, 443, 444
NmeAIII	GCCGAG	2 cut(s)	381, 381
NmuCI	GTSAC	3 cut(s)	49, 175, 187
NruI	TCGCGA	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	9 cut(s)	59, 73, 235, 238, 308, 311, 354, 425, 475
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
Ppu21I	YACGTR	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	3 cut(s)	81, 318, 375
PspCI	CACGTG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	3 cut(s)	81, 318, 375
PspN4I	GGNNCC	6 cut(s)	6, 18, 87, 225, 443, 444
PspPI	GGNCC	3 cut(s)	98, 253, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	3 cut(s)	16, 213, 359
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	410
SatI	GCNGC	9 cut(s)	58, 72, 234, 237, 307, 310, 353, 424, 474
Sau3AI	GATC	5 cut(s)	16, 93, 123, 213, 359
Sau96I	GGNCC	3 cut(s)	98, 253, 442
ScrFI	CCNGG	3 cut(s)	83, 320, 377
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	6 cut(s)	30, 189, 288, 297, 399, 410
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	98, 442
SmiMI	CAYNNNNRTG	1 cut(s)	410
SseBI	AGGCCT	1 cut(s)	375
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	81, 318, 375
StyI	CCWWGG	3 cut(s)	153, 183, 363
TaaI	ACNGT	4 cut(s)	193, 203, 346, 388
TaiI	ACGT	2 cut(s)	297, 410
TaqII	GACCGA	2 cut(s)	86, 95
TauI	GCSGC	6 cut(s)	60, 74, 236, 239, 309, 476
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	3 cut(s)	49, 175, 187
TseI	GCWGC	3 cut(s)	309, 352, 423
Tsp45I	GTSAC	3 cut(s)	49, 175, 187
TspGWI	ACGGA	2 cut(s)	406, 450
TspRI	CASTG	1 cut(s)	184
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	98, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.