AT2G39570

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003332
Physical Location & Seq
Forward (+)
16507882 .. 16510264
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39570.1

Sequence Viewer

Length: 1236 bp
ATGGGAATTCTCAACGACGACGCCGTTTTAATCGAACCGGGAAAAATCTCCGGAGATCCCACCGTCGTTACCGTCAATTGTCCTGATGAATCCGGTCTCGGTTCAACTCTGTGTAGAATCATCCTCGAATTTGGTCTCTCCATTACCCGAGCAGATTTTTCAACAGATGGAAGATGGTGTTATATAGTGTTTTGGGTTACTCCAGATATTAGCTCTCCTAAAATTGATTGGGACAGCTTAAAGAATCGTCTTTTATCAGCTTGTCCTTCTTGCTTAGGCTCTTTCTACTTCTGCCTTCAATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATGATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAGTCATGACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAATGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGCTTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGGCCTGAGTTAGAGAGTGTGCAACGATTCTCTTCACTTCCACCTTTGGCTGCTGATGAGCTGTTTGGCCCAGATGGGTTTGATATTAGCGGCTCTAGCTCTAACAAAGCGGTTCTTACCGTTGATAATCAGTTGAGCCCTGCACATACGTTGCTTCAGATTCGTTGTGTTGATCAAAAGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAGTTGTTTGTTAGAGGCACAGACGGGAATAAAATAATGGACCCAAAACATCAAGCCAACTTCTGTGCTCGACTTAAGGAGGAAATGGTGTGTCCTTTGCGAGTGATTATCGTGAACCGAGGACCAGATACTGAGCTATTAGTAGCCAACCCTGTGGAACTATCCGGAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCCGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATAGATTTCTTTTGGATGAGAGTCGTGAATTCCCATTGGCTAGCCTCCGTGCGAGAAATCAAGTAGTAGATAGAGTCACAAAGACACTTATGGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

411

Amino Acids

46.04

Weight (kDa)

6.27

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 14 - 89 4e-37 ACT domain-containing protein ACR10, N-terminal
ACT PF01842 111 - 171 3.1e-10 ACT domain
ACT_ACR9_3rd PF24931 231 - 327 2.7e-43 ACR9-like, ACT-like domain
ACT_ACR9_C PF24926 328 - 410 7.8e-41 ACT domain-containing protein ACR9, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AccIII TCCGGA 2 cut(s) 50, 1016
AciI CCGC 3 cut(s) 666, 686, 1089
AclWI GGATC 2 cut(s) 50, 489
AcsI RAATTY 4 cut(s) 6, 128, 847, 1163
AcuI CTGAAG 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 529
AflII CTTAAG 1 cut(s) 926
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 5 cut(s) 105, 162, 299, 569, 1063
AluBI AGCT 9 cut(s) 213, 237, 260, 397, 565, 575, 637, 675, 988
AluI AGCT 9 cut(s) 213, 237, 260, 397, 565, 575, 637, 675, 988
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 5 cut(s) 101, 140, 313, 496, 1096
AlwI GGATC 2 cut(s) 50, 489
AlwNI CAGNNNCTG 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 2 cut(s) 50, 1016
AoxI GGCC 2 cut(s) 578, 643
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 4 cut(s) 6, 128, 847, 1163
AspS9I GGNCC 4 cut(s) 578, 644, 892, 974
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 1175
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 892, 974
AxyI CCTNAGG 1 cut(s) 776
BanII GRGCYC 1 cut(s) 716
BauI CACGAG 1 cut(s) 1032
BbsI GAAGAC 1 cut(s) 1033
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 1 cut(s) 613
BccI CCATC 5 cut(s) 161, 168, 434, 531, 644
BceAI ACGGC 3 cut(s) 8, 333, 546
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 5 cut(s) 101, 140, 313, 496, 1096
BfaI CTAG 5 cut(s) 398, 572, 672, 1070, 1176
BfrI CTTAAG 1 cut(s) 926
BisI GCNGC 2 cut(s) 627, 667
BlsI GCNGC 2 cut(s) 628, 668
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 892, 974
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 4 cut(s) 578, 644, 892, 974
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 1089
BmtI GCTAGC 1 cut(s) 1179
BpiI GAAGAC 1 cut(s) 1033
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 21
BsaI GGTCTC 2 cut(s) 101, 140
BsaJI CCNNGG 2 cut(s) 828, 970
BsaWI WCCGGW 3 cut(s) 50, 92, 1016
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse21I CCTNAGG 1 cut(s) 776
Bse3DI GCAATG 2 cut(s) 483, 804
BseAI TCCGGA 2 cut(s) 50, 1016
BseDI CCNNGG 2 cut(s) 828, 970
BseGI GGATG 2 cut(s) 120, 1156
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 2 cut(s) 483, 804
BseMII CTCAG 4 cut(s) 573, 790, 975, 1083
BseRI GAGGAG 1 cut(s) 814
BseXI GCAGC 1 cut(s) 613
BseYI CCCAGC 1 cut(s) 575
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 2 cut(s) 580, 645
BsiHKAI GWGCWC 1 cut(s) 922
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 38, 51, 93, 1017
BslFI GGGAC 2 cut(s) 245, 771
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 5 cut(s) 101, 140, 313, 496, 1096
BsmFI GGGAC 2 cut(s) 245, 771
BsnI GGCC 2 cut(s) 580, 645
Bso31I GGTCTC 2 cut(s) 101, 140
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 716, 922
Bsp13I TCCGGA 2 cut(s) 50, 1016
Bsp143I GATC 4 cut(s) 55, 481, 748, 1117
BspACI CCGC 3 cut(s) 666, 686, 1089
BspANI GGCC 2 cut(s) 580, 645
BspCNI CTCAG 4 cut(s) 574, 789, 976, 1084
BspEI TCCGGA 2 cut(s) 50, 1016
BspHI TCATGA 2 cut(s) 370, 426
BspLI GGNNCC 1 cut(s) 894
BspOI GCTAGC 1 cut(s) 1179
BspPI GGATC 2 cut(s) 50, 489
BspTI CTTAAG 1 cut(s) 926
BspTNI GGTCTC 2 cut(s) 101, 140
BsrDI GCAATG 2 cut(s) 483, 804
BssECI CCNNGG 2 cut(s) 828, 970
BssMI GATC 4 cut(s) 55, 481, 748, 1117
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 1 cut(s) 828
Bst2BI CACGAG 1 cut(s) 1032
Bst4CI ACNGT 4 cut(s) 64, 73, 697, 815
Bst6I CTCTTC 2 cut(s) 439, 613
BstACI GRCGYC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 926
BstC8I GCNNGC 1 cut(s) 1177
BstDEI CTNAG 6 cut(s) 274, 312, 582, 776, 984, 1092
BstF5I GGATG 2 cut(s) 120, 1156
BstKTI GATC 4 cut(s) 58, 484, 751, 1120
BstMAI GTCTC 5 cut(s) 101, 140, 313, 496, 1096
BstMBI GATC 4 cut(s) 55, 481, 748, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 544, 672
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 1033
BstX2I RGATCY 2 cut(s) 55, 481
BstXI CCANNNNNNTGG 1 cut(s) 1006
BstYI RGATCY 2 cut(s) 55, 481
Bsu36I CCTNAGG 1 cut(s) 776
BsuRI GGCC 2 cut(s) 580, 645
BtgZI GCGATG 1 cut(s) 810
BtsCI GGATG 2 cut(s) 120, 1156
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 1177
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 2 cut(s) 370, 426
Cfr13I GGNCC 4 cut(s) 578, 644, 892, 974
CseI GACGC 2 cut(s) 29, 482
CviAII CATG 3 cut(s) 371, 427, 548
DdeI CTNAG 6 cut(s) 274, 312, 582, 776, 984, 1092
DpnI GATC 4 cut(s) 57, 483, 750, 1119
DpnII GATC 4 cut(s) 55, 481, 748, 1117
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
Eam1104I CTCTTC 2 cut(s) 439, 613
EarI CTCTTC 2 cut(s) 439, 613
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 1 cut(s) 716
Eco31I GGTCTC 2 cut(s) 101, 140
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 892, 974
Eco57I CTGAAG 1 cut(s) 716
Eco81I CCTNAGG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 147
EcoRI GAATTC 2 cut(s) 6, 1163
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 3 cut(s) 374, 430, 551
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 675, 707
FaqI GGGAC 2 cut(s) 245, 771
FatI CATG 3 cut(s) 370, 426, 547
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 2 cut(s) 627, 667
FokI GGATG 2 cut(s) 107, 1163
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 2 cut(s) 627, 667
FspBI CTAG 5 cut(s) 398, 572, 672, 1070, 1176
GluI GCNGC 2 cut(s) 627, 667
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 580, 645
HapII CCGG 4 cut(s) 38, 51, 93, 1017
HgaI GACGC 2 cut(s) 29, 482
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 3 cut(s) 374, 430, 551
HinfI GANTC 9 cut(s) 89, 117, 244, 417, 603, 736, 1074, 1156, 1209
HpaII CCGG 4 cut(s) 38, 51, 93, 1017
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 405, 802, 967
Hpy188I TCNGA 1 cut(s) 735
Hpy188III TCNNGA 9 cut(s) 51, 83, 203, 371, 427, 778, 964, 1017, 1160
Hpy8I GTNNAC 3 cut(s) 405, 802, 967
Hpy99I CGWCG 3 cut(s) 20, 23, 68
HpyAV CCTTC 3 cut(s) 276, 305, 330
HpyCH4III ACNGT 4 cut(s) 64, 73, 697, 815
HpyCH4IV ACGT 2 cut(s) 515, 725
HpyCH4V TGCA 5 cut(s) 490, 598, 719, 809, 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 672
HpyF3I CTNAG 6 cut(s) 274, 312, 582, 776, 984, 1092
HpySE526I ACGT 2 cut(s) 515, 725
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 3 cut(s) 374, 430, 551
Kpn2I TCCGGA 2 cut(s) 50, 1016
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 4 cut(s) 55, 481, 748, 1117
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 1089
MaeI CTAG 5 cut(s) 398, 572, 672, 1070, 1176
MaeII ACGT 2 cut(s) 515, 725
MaeIII GTNAC 6 cut(s) 67, 196, 376, 518, 1048, 1210
MalI GATC 4 cut(s) 57, 483, 750, 1119
MboI GATC 4 cut(s) 55, 481, 748, 1117
MboII GAAGA 6 cut(s) 183, 323, 456, 600, 1038, 1075
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 2 cut(s) 55, 481
MhlI GDGCHC 2 cut(s) 716, 922
MluCI AATT 6 cut(s) 6, 76, 128, 222, 847, 1163
MlyI GAGTC 3 cut(s) 426, 1165, 1218
MnlI CCTC 8 cut(s) 134, 327, 785, 835, 860, 925, 965, 1190
MroI TCCGGA 2 cut(s) 50, 1016
MseI TTAA 4 cut(s) 29, 239, 834, 927
MspA1I CMGCKG 1 cut(s) 1091
MspCI CTTAAG 1 cut(s) 926
MspI CCGG 4 cut(s) 38, 51, 93, 1017
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 544, 672
NciI CCSGG 1 cut(s) 39
NdeII GATC 4 cut(s) 55, 481, 748, 1117
NheI GCTAGC 1 cut(s) 1175
NlaIII CATG 3 cut(s) 374, 430, 551
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 3 cut(s) 518, 1048, 1210
PagI TCATGA 2 cut(s) 370, 426
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 6 cut(s) 89, 117, 244, 603, 736, 1074
PkrI GCNGC 2 cut(s) 628, 668
PleI GAGTC 3 cut(s) 425, 1164, 1217
PpsI GAGTC 3 cut(s) 425, 1164, 1217
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 4 cut(s) 578, 644, 892, 974
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 2 cut(s) 55, 481
SaqAI TTAA 4 cut(s) 29, 239, 834, 927
SatI GCNGC 2 cut(s) 627, 667
Sau3AI GATC 4 cut(s) 55, 481, 748, 1117
Sau96I GGNCC 4 cut(s) 578, 644, 892, 974
SchI GAGTC 3 cut(s) 426, 1165, 1218
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 2 cut(s) 716, 922
SfaNI GCATC 1 cut(s) 1089
SinI GGWCC 2 cut(s) 892, 974
SmlI CTYRAG 2 cut(s) 335, 926
SmoI CTYRAG 2 cut(s) 335, 926
Sse9I AATT 6 cut(s) 6, 76, 128, 222, 847, 1163
SsiI CCGC 3 cut(s) 666, 686, 1089
SspMI CTAG 5 cut(s) 398, 572, 672, 1070, 1176
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 4 cut(s) 64, 73, 697, 815
TaiI ACGT 2 cut(s) 518, 728
TaqI TCGA 5 cut(s) 33, 126, 922, 1109, 1120
TasI AATT 6 cut(s) 6, 76, 128, 222, 847, 1163
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 6 cut(s) 89, 117, 244, 603, 736, 1074
Tru1I TTAA 4 cut(s) 29, 239, 834, 927
Tru9I TTAA 4 cut(s) 29, 239, 834, 927
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 3 cut(s) 518, 1048, 1210
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 3 cut(s) 518, 1048, 1210
TspDTI ATGAA 3 cut(s) 102, 359, 454
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 892, 974
XapI RAATTY 4 cut(s) 6, 128, 847, 1163
XspI CTAG 5 cut(s) 398, 572, 672, 1070, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.