Rmu_ssc0000250.1_g000013

ACT domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000250.1
Physical Location & Seq
Reverse (-)
56171 .. 59619
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000250.1_g000013.1.cds

Sequence Viewer

Length: 1383 bp
atggccatttcctgcgacgacgtcgttatagtccagcaggggaagaatcccggcgagccgaccgtcgtgacgatcaattgtcccgacaagcccggcctcggctgcgacctctgcagaaccgtgcttcaattcgggctttgcattaccaaaggagatttcacgacggacaagaagtggtgctacatagtgttgtgggtggtagcgaatcagagctcaatgaaggtggattgggagaggttgaaggagcggctgctcgctgcttgtccgtcttcgtgtttctacaaggtttacctcaatattcagtccagtgctccctcgccgtcgccggtttacctcctgaagttttggtgctttgaccagagaggctcactgcatgatgttactaaggtgctgtgtgagcttgagatgctgattcagagagtgaaagtgatgccgactccggatgggagggttttggacctgttcttcatcacggattgcttagatttgctacacacgaaaaagaggagagatgacatatgtgagcatctgatggctgccctaggagagtactgtatcacctgtgaggttcagttggcagggcctgaatatgaaagtttgcagggaaattattctcttccatcagcaattgccgaagaattatttagctatcggctaacagatgacaaagcttgtccaaaagctctcagcccaagtttggcaacagtgaaaaacacaagtattacgttggataatacactgagccctgttcatacgttgctgcaaatacaatgtgtggatcaaaagggcctcttttatgacgtactaaggacttccaaggattgcaaaattcagattgcctatgctagattctcttctactgtcaaaggcatccgaaatttggaactgtttattcagcacacagatgggaaaaagattgcagatcctgaaagacaggttgcattgtgttctcggttgaaggaggagatacttcacccgctgagagtgatcattgccaacaagggtccagatactgaactcctagtcgctaatccagttgagttatctggaaaaggacggcccctcgtcttttatgatgttactcttgcactgaaaaagttgggaatatctattttcttggctgaaattgtaaggcatgagactgaagattgccagtgggaagtctatagatttcttttggatgatagtcgagaatttcctttggggaacagagaagctagaaataagatttcctctgtcatggaggcagatacaagtgatactgatgattactgtgatgtgattattcacaataatcaacggtcatctctttgtgtaaaccaatacatggcggcactacatctctctgatgcattcacgttcggcatcgcgagtgcgctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

51.7

Weight (kDa)

5.59

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 1327
AccBSI CCGCTC 1 cut(s) 247
AccII CGCG 1 cut(s) 1370
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 3 cut(s) 247, 977, 1331
AclWI GGATC 2 cut(s) 786, 917
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 828, 877, 1193
AcuI CTGAAG 2 cut(s) 359, 1164
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 551, 804
AfiI CCNNNNNNNGG 4 cut(s) 98, 697, 880, 1327
AgsI TTSAA 3 cut(s) 128, 241, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 6 cut(s) 213, 400, 648, 671, 683, 1217
AluI AGCT 6 cut(s) 213, 400, 648, 671, 683, 1217
Alw21I GWGCWC 2 cut(s) 215, 313
Alw26I GTCTC 1 cut(s) 1133
AlwI GGATC 2 cut(s) 786, 917
AlwNI CAGNNNCTG 3 cut(s) 584, 926, 1013
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 5 cut(s) 3, 94, 581, 787, 1058
ApeKI GCWGC 5 cut(s) 102, 250, 257, 536, 760
ApoI RAATTY 3 cut(s) 828, 877, 1193
Asp700I GAANNNNTTC 1 cut(s) 610
AspA2I CCTAGG 1 cut(s) 541
AspLEI GCGC 1 cut(s) 1378
AspS9I GGNCC 5 cut(s) 457, 581, 787, 1004, 1059
AsuC2I CCSGG 2 cut(s) 51, 93
AsuHPI GGTGA 2 cut(s) 550, 965
AvaII GGWCC 2 cut(s) 457, 1004
AvrII CCTAGG 1 cut(s) 541
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 215, 746
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 215, 313
BbvI GCAGC 5 cut(s) 89, 237, 244, 523, 747
BccI CCATC 4 cut(s) 437, 526, 628, 899
BceAI ACGGC 2 cut(s) 304, 1073
BclI TGATCA 1 cut(s) 987
BcnI CCSGG 2 cut(s) 51, 93
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 4 cut(s) 542, 846, 1022, 1218
BfmI CTRYAG 2 cut(s) 112, 1165
BisI GCNGC 7 cut(s) 103, 248, 251, 258, 537, 761, 1332
BlnI CCTAGG 1 cut(s) 541
BlsI GCNGC 7 cut(s) 104, 249, 252, 259, 538, 762, 1333
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 2 cut(s) 51, 93
Bme18I GGWCC 2 cut(s) 457, 1004
BmgT120I GGNCC 5 cut(s) 457, 581, 787, 1004, 1059
BmiI GGNNCC 2 cut(s) 1005, 1061
BmrFI CCNGG 2 cut(s) 51, 93
BmsI GCATC 6 cut(s) 396, 420, 535, 879, 1339, 1374
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 51, 93
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 97, 541, 816
BsaWI WCCGGW 1 cut(s) 439
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 697, 880, 1327
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 3 cut(s) 306, 1034, 1153
Bse3DI GCAATG 1 cut(s) 990
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 97, 541, 816
BseGI GGATG 3 cut(s) 448, 870, 1186
BseLI CCNNNNNNNGG 4 cut(s) 98, 697, 880, 1327
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 3 cut(s) 700, 731, 971
BseNI ACTGG 3 cut(s) 306, 1034, 1153
BseRI GAGGAG 2 cut(s) 520, 977
BseXI GCAGC 5 cut(s) 89, 237, 244, 523, 747
Bsh1236I CGCG 1 cut(s) 1370
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 5, 96, 583, 789, 1060
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 215, 313
BsiSI CCGG 4 cut(s) 51, 93, 326, 440
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 4 cut(s) 98, 697, 880, 1327
BsmAI GTCTC 1 cut(s) 1133
BsmFI GGGAC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 5 cut(s) 5, 96, 583, 789, 1060
Bsp1286I GDGCHC 3 cut(s) 215, 313, 746
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 4 cut(s) 72, 778, 922, 987
Bsp68I TCGCGA 1 cut(s) 1370
BspACI CCGC 3 cut(s) 247, 977, 1331
BspANI GGCC 5 cut(s) 5, 96, 583, 789, 1060
BspCNI CTCAG 3 cut(s) 699, 732, 972
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 1370
BspLI GGNNCC 2 cut(s) 1005, 1061
BspMAI CTGCAG 1 cut(s) 116
BspPI GGATC 2 cut(s) 786, 917
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 990
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 3 cut(s) 306, 1034, 1153
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 97, 541, 816
BssMI GATC 4 cut(s) 72, 778, 922, 987
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 541, 816
Bst4CI ACNGT 8 cut(s) 64, 121, 554, 706, 862, 888, 1274, 1302
Bst6I CTCTTC 2 cut(s) 621, 859
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 56, 255
BstDEI CTNAG 6 cut(s) 384, 481, 686, 740, 806, 980
BstF5I GGATG 3 cut(s) 448, 870, 1186
BstFNI CGCG 1 cut(s) 1370
BstHHI GCGC 1 cut(s) 1378
BstKTI GATC 4 cut(s) 75, 781, 925, 990
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 4 cut(s) 72, 778, 922, 987
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 4 cut(s) 102, 111, 397, 406
BstSCI CCNGG 2 cut(s) 49, 91
BstSFI CTRYAG 2 cut(s) 112, 1165
BstUI CGCG 1 cut(s) 1370
BstV1I GCAGC 5 cut(s) 89, 237, 244, 523, 747
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
BsuRI GGCC 5 cut(s) 5, 96, 583, 789, 1060
BtgZI GCGATG 1 cut(s) 1351
BtsCI GGATG 3 cut(s) 448, 870, 1186
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 6 cut(s) 313, 368, 711, 737, 1088, 1160
BtuMI TCGCGA 1 cut(s) 1370
Cac8I GCNNGC 2 cut(s) 56, 255
CaiI CAGNNNCTG 3 cut(s) 584, 926, 1013
CfoI GCGC 1 cut(s) 1378
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 5 cut(s) 457, 581, 787, 1004, 1059
Csp6I GTAC 2 cut(s) 550, 803
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 4 cut(s) 374, 1136, 1240, 1327
CviQI GTAC 2 cut(s) 550, 803
DdeI CTNAG 6 cut(s) 384, 481, 686, 740, 806, 980
DpnI GATC 4 cut(s) 74, 780, 924, 989
DpnII GATC 4 cut(s) 72, 778, 922, 987
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 621, 859
EarI CTCTTC 2 cut(s) 621, 859
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 541, 816
Eco24I GRGCYC 2 cut(s) 215, 746
Eco47I GGWCC 2 cut(s) 457, 1004
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 359, 1164
EcoICRI GAGCTC 1 cut(s) 213
EcoO109I RGGNCCY 2 cut(s) 581, 787
EcoT14I CCWWGG 2 cut(s) 541, 816
EcoT22I ATGCAT 1 cut(s) 1354
EcoT38I GRGCYC 2 cut(s) 215, 746
ErhI CCWWGG 2 cut(s) 541, 816
FaeI CATG 4 cut(s) 377, 1139, 1243, 1330
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 1 cut(s) 66
FatI CATG 4 cut(s) 373, 1135, 1239, 1326
FauI CCCGC 1 cut(s) 984
FauNDI CATATG 1 cut(s) 518
FbaI TGATCA 1 cut(s) 987
Fnu4HI GCNGC 7 cut(s) 103, 248, 251, 258, 537, 761, 1332
FokI GGATG 3 cut(s) 455, 857, 1193
FriOI GRGCYC 2 cut(s) 215, 746
Fsp4HI GCNGC 7 cut(s) 103, 248, 251, 258, 537, 761, 1332
FspBI CTAG 4 cut(s) 542, 846, 1022, 1218
GlaI GCGC 1 cut(s) 1377
GluI GCNGC 7 cut(s) 103, 248, 251, 258, 537, 761, 1332
HaeIII GGCC 5 cut(s) 5, 96, 583, 789, 1060
HapII CCGG 4 cut(s) 51, 93, 326, 440
HhaI GCGC 1 cut(s) 1378
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 4 cut(s) 377, 1139, 1243, 1330
Hin6I GCGC 1 cut(s) 1376
HinP1I GCGC 1 cut(s) 1376
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 5 cut(s) 46, 205, 412, 436, 849
HpaII CCGG 4 cut(s) 51, 93, 326, 440
HphI GGTGA 2 cut(s) 550, 965
Hpy166II GTNNAC 3 cut(s) 289, 331, 1318
Hpy188I TCNGA 6 cut(s) 210, 417, 531, 834, 875, 1348
Hpy8I GTNNAC 3 cut(s) 289, 331, 1318
Hpy99I CGWCG 6 cut(s) 20, 23, 26, 68, 166, 325
HpyAV CCTTC 3 cut(s) 214, 235, 952
HpyCH4III ACNGT 8 cut(s) 64, 121, 554, 706, 862, 888, 1274, 1302
HpyCH4IV ACGT 5 cut(s) 21, 725, 755, 801, 1358
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 111, 397, 406
HpyF3I CTNAG 6 cut(s) 384, 481, 686, 740, 806, 980
HpySE526I ACGT 5 cut(s) 21, 725, 755, 801, 1358
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 4 cut(s) 377, 1139, 1243, 1330
HspAI GCGC 1 cut(s) 1376
Kpn2I TCCGGA 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 987
Kzo9I GATC 4 cut(s) 72, 778, 922, 987
LmnI GCTCC 2 cut(s) 244, 316
Lsp1109I GCAGC 5 cut(s) 89, 237, 244, 523, 747
LweI GCATC 6 cut(s) 396, 420, 535, 879, 1339, 1374
MaeI CTAG 4 cut(s) 542, 846, 1022, 1218
MaeII ACGT 5 cut(s) 21, 725, 755, 801, 1358
MaeIII GTNAC 3 cut(s) 67, 379, 1078
MalI GATC 4 cut(s) 74, 780, 924, 989
MbiI CCGCTC 1 cut(s) 247
MboI GATC 4 cut(s) 72, 778, 922, 987
MboII GAAGA 7 cut(s) 55, 261, 457, 608, 647, 846, 1157
MfeI CAATTG 2 cut(s) 76, 627
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 3 cut(s) 215, 313, 746
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 76, 128, 607, 627, 638, 828, 877, 1125, 1193
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 708
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1354
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 610
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 903
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 979
MspI CCGG 4 cut(s) 51, 93, 326, 440
MspR9I CCNGG 2 cut(s) 51, 93
MunI CAATTG 2 cut(s) 76, 627
Mva1269I GAATGC 1 cut(s) 1352
MvnI CGCG 1 cut(s) 1370
MwoI GCNNNNNNNGC 4 cut(s) 102, 111, 397, 406
NciI CCSGG 2 cut(s) 51, 93
NdeI CATATG 1 cut(s) 518
NdeII GATC 4 cut(s) 72, 778, 922, 987
NlaIII CATG 4 cut(s) 377, 1139, 1243, 1330
NlaIV GGNNCC 2 cut(s) 1005, 1061
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 67
NruI TCGCGA 1 cut(s) 1370
NsiI ATGCAT 1 cut(s) 1354
PctI GAATGC 1 cut(s) 1352
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 4 cut(s) 46, 205, 412, 849
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 1327
PkrI GCNGC 7 cut(s) 104, 249, 252, 259, 538, 762, 1333
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 1005, 1061
PspPI GGNCC 5 cut(s) 457, 581, 787, 1004, 1059
PstI CTGCAG 1 cut(s) 116
PstNI CAGNNNCTG 3 cut(s) 584, 926, 1013
PsuI RGATCY 1 cut(s) 922
PsyI GACNNNGTC 1 cut(s) 20
RruI TCGCGA 1 cut(s) 1370
RsaI GTAC 2 cut(s) 551, 804
RsaNI GTAC 2 cut(s) 550, 803
RseI CAYNNNNRTG 1 cut(s) 903
SacI GAGCTC 1 cut(s) 215
SatI GCNGC 7 cut(s) 103, 248, 251, 258, 537, 761, 1332
Sau3AI GATC 4 cut(s) 72, 778, 922, 987
Sau96I GGNCC 5 cut(s) 457, 581, 787, 1004, 1059
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 2 cut(s) 51, 93
SduI GDGCHC 3 cut(s) 215, 313, 746
SfaNI GCATC 6 cut(s) 396, 420, 535, 879, 1339, 1374
SfcI CTRYAG 2 cut(s) 112, 1165
SinI GGWCC 2 cut(s) 457, 1004
SmiMI CAYNNNNRTG 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 9 cut(s) 76, 128, 607, 627, 638, 828, 877, 1125, 1193
SsiI CCGC 3 cut(s) 247, 977, 1331
SspI AATATT 1 cut(s) 298
SspMI CTAG 4 cut(s) 542, 846, 1022, 1218
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 49, 91
StyI CCWWGG 2 cut(s) 541, 816
TaaI ACNGT 8 cut(s) 64, 121, 554, 706, 862, 888, 1274, 1302
TaiI ACGT 5 cut(s) 24, 728, 758, 804, 1361
TaqI TCGA 1 cut(s) 1189
TasI AATT 9 cut(s) 76, 128, 607, 627, 638, 828, 877, 1125, 1193
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 250, 1334
TfiI GAWTC 4 cut(s) 46, 205, 412, 849
TscAI CASTG 6 cut(s) 313, 375, 711, 744, 1095, 1160
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 102, 250, 257, 536, 760
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 233, 457, 606, 740
TspGWI ACGGA 3 cut(s) 179, 255, 488
TspRI CASTG 6 cut(s) 313, 375, 711, 744, 1095, 1160
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 1327
VpaK11BI GGWCC 2 cut(s) 457, 1004
XapI RAATTY 3 cut(s) 828, 877, 1193
XmaJI CCTAGG 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 4 cut(s) 542, 846, 1022, 1218
ZraI GACGTC 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 551
Zsp2I ATGCAT 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.