Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Forward (+)

7502958 .. 7505874

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTGTGCCGAGCGACGACGTCGTTGTGATCCAGAAAGGAAAGCGGCCTGGCGAGCCCTGCATCATCACCGTCAATTGCCCGGACAAGACCGGCCTCGGGTGCGATATTTGCAGAATCATCCTCGATTTTGGCCTTCTAATAGAAAAAGCAGATTTTTCGACTGATGGGATATGGTGCTACGTAGTGTTATGGGTGTTTCCTGATTCCAGCTCCCCAGCAGTGAAATTGTCAAATTTGAAGAACCAGCTACAATCTGTATGCCCATCATGTTCAGTGCCGTTTTACTTGTACCAGCAGCCCACACGAACGTCGTCCTCACCAGTTTATCTGTTGACGTTTCTTTGCCTCGACCGCAAGGGATTGTTGCATGATGTTACACAAACTCTCTCAGAGCTTGAGCTTTCGATTCAGCGAGTGAAAGTTACGACAACCCCCGATGATAGGGTCTTGGACCTTTTCTTTATAACAGATAACATGGACCTTTTACACACAAAGGAACGCCAAGATGAGACGATAAAACAATTGCGTGATGTTTTGGGTGAGTCATGTATCAGCTGCGAACTTCAGCTGGTAGGTCCCGAGTATGAATCCCACCATGGAATCCCTTCCCTTTCTCCTGCGGTAGCTGAAGAGCTATTTAGGTGTGAGTTATTGGATAAAGAAACCCGGTCTCAAGCTCTTAGTCCAGATATGACAAAGTTGAAGAAAACCAATGTGACTATGGACAATTCGTTGAGCCCTGCTCATACATTACTTCAAATCCACTGTGCTGACCACAAAGGTCTCTTGTATGACATTCTGAGAACTTTGAAAGACTCCAATATCAAGATAGCTTATGGTAGAATTTCTCCAAATATTAAAGGCTATCGCGATTTAGACCTATTCATTCAGCAAAATGATGGGAAAAAGCTTATGGATCCCGATAAGCAGAGCGCACTGTATTTGCGGTTGAAGGTGGAGATGCTTCACCCGTTACGTGTTATCATTGCAAACCGAGGGCCAGATACTGAACTGTTAGTTGCTAATCCAGTTGAGCTATCTGGAAAGGGAAGACCACGAGTTTTCTATGATGTTACAATTGCTCTAAAAACACTCGGGATATGCATTTTCTCGGCTGAAATCGGGAGGGTAGCGGCATCAGATCGTGAATGGGAGGTGTATACCTTTTTGCTGGAAGAGAACCACAACTTTCAGTTATCAAACTTGGTAGCTAAGAATCAGATTGTAGATAGAGTTAGAAGAACTTTGATGGGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

421

Amino Acids

47.36

Weight (kDa)

5.9

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AatII	GACGTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	1163
AccII	CGCG	1 cut(s)	873
AciI	CCGC	5 cut(s)	46, 355, 623, 949, 1136
AclWI	GGATC	3 cut(s)	25, 914, 927
AcsI	RAATTY	2 cut(s)	235, 846
AcuI	CTGAAG	2 cut(s)	551, 651
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	99, 444
AflIII	ACRYGT	1 cut(s)	979
AgsI	TTSAA	5 cut(s)	241, 706, 761, 814, 955
AjnI	CCWGG	1 cut(s)	49
Alw26I	GTCTC	3 cut(s)	506, 678, 791
AlwI	GGATC	3 cut(s)	25, 914, 927
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	3 cut(s)	98, 581, 1097
AoxI	GGCC	4 cut(s)	47, 94, 133, 1001
ApeKI	GCWGC	2 cut(s)	298, 558
ApoI	RAATTY	2 cut(s)	235, 846
Asp700I	GAANNNNTTC	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	938
AspS9I	GGNCC	4 cut(s)	454, 481, 578, 1001
AsuC2I	CCSGG	2 cut(s)	83, 670
AsuHPI	GGTGA	4 cut(s)	61, 312, 554, 962
AvaI	CYCGRG	3 cut(s)	98, 581, 1097
AvaII	GGWCC	3 cut(s)	454, 481, 578
BamHI	GGATCC	1 cut(s)	919
BanII	GRGCYC	2 cut(s)	60, 743
BauI	CACGAG	1 cut(s)	1059
BbsI	GAAGAC	1 cut(s)	1060
BbvI	GCAGC	2 cut(s)	310, 545
BccI	CCATC	4 cut(s)	161, 274, 896, 1246
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	83, 670
BcoDI	GTCTC	3 cut(s)	506, 678, 791
BisI	GCNGC	4 cut(s)	47, 299, 559, 1137
BlsI	GCNGC	4 cut(s)	48, 300, 560, 1138
Bme1390I	CCNGG	3 cut(s)	51, 83, 670
Bme18I	GGWCC	3 cut(s)	454, 481, 578
BmeT110I	CYCGRG	3 cut(s)	98, 581, 1097
BmgT120I	GGNCC	4 cut(s)	454, 481, 578, 1001
BmiI	GGNNCC	2 cut(s)	580, 921
BmrFI	CCNGG	3 cut(s)	51, 83, 670
BmsI	GCATC	3 cut(s)	72, 954, 1148
BpiI	GAAGAC	1 cut(s)	1060
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpuEI	CTTGAG	2 cut(s)	419, 660
BpuMI	CCSGG	2 cut(s)	83, 670
BsaAI	YACGTR	2 cut(s)	184, 980
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	678, 791
BsaJI	CCNNGG	3 cut(s)	97, 598, 997
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 444
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	323, 1031
Bse3DI	GCAATG	1 cut(s)	987
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	97, 598, 997
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	99, 444
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	2 cut(s)	405, 794
BseNI	ACTGG	2 cut(s)	323, 1031
BseXI	GCAGC	2 cut(s)	310, 545
BseYI	CCCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	873
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	4 cut(s)	49, 96, 135, 1003
BsiEI	CGRYCG	1 cut(s)	355
BsiHKCI	CYCGRG	3 cut(s)	98, 581, 1097
BsiSI	CCGG	3 cut(s)	83, 93, 670
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	99, 444
BsmAI	GTCTC	3 cut(s)	506, 678, 791
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	4 cut(s)	49, 96, 135, 1003
Bso31I	GGTCTC	2 cut(s)	678, 791
BsoBI	CYCGRG	3 cut(s)	98, 581, 1097
Bsp1286I	GDGCHC	2 cut(s)	60, 743
Bsp143I	GATC	3 cut(s)	30, 919, 1144
Bsp19I	CCATGG	1 cut(s)	598
Bsp68I	TCGCGA	1 cut(s)	873
BspACI	CCGC	5 cut(s)	46, 355, 623, 949, 1136
BspANI	GGCC	4 cut(s)	49, 96, 135, 1003
BspCNI	CTCAG	2 cut(s)	404, 795
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	580, 921
BspPI	GGATC	3 cut(s)	25, 914, 927
BspQI	GCTCTTC	1 cut(s)	627
BspTNI	GGTCTC	2 cut(s)	678, 791
BsrDI	GCAATG	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	323, 1031
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	97, 598, 997
BssMI	GATC	3 cut(s)	30, 919, 1144
BssNAI	GTATAC	1 cut(s)	1164
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	1164
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	4 cut(s)	73, 770, 942, 1017
Bst6I	CTCTTC	2 cut(s)	627, 1173
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	2 cut(s)	184, 980
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	391, 683, 803, 1215
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	938
BstKTI	GATC	3 cut(s)	33, 922, 1147
BstMAI	GTCTC	3 cut(s)	506, 678, 791
BstMBI	GATC	3 cut(s)	30, 919, 1144
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 60, 102, 111, 354
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 81, 668
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	2 cut(s)	310, 545
BstV2I	GAAGAC	1 cut(s)	1060
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BstZ17I	GTATAC	1 cut(s)	1164
BsuRI	GGCC	4 cut(s)	49, 96, 135, 1003
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	4 cut(s)	228, 282, 766, 938
BtuMI	TCGCGA	1 cut(s)	873
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	1010
CfoI	GCGC	1 cut(s)	938
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	454, 481, 578, 1001
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	270, 371, 478, 549, 599
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	4 cut(s)	391, 683, 803, 1215
DpnI	GATC	3 cut(s)	32, 921, 1146
DpnII	GATC	3 cut(s)	30, 919, 1144
Eam1104I	CTCTTC	2 cut(s)	627, 1173
EarI	CTCTTC	2 cut(s)	627, 1173
Eco105I	TACGTA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	60, 743
Eco31I	GGTCTC	2 cut(s)	678, 791
Eco47I	GGWCC	3 cut(s)	454, 481, 578
Eco57I	CTGAAG	2 cut(s)	551, 651
Eco88I	CYCGRG	3 cut(s)	98, 581, 1097
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	1109
EcoT38I	GRGCYC	2 cut(s)	60, 743
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	5 cut(s)	273, 374, 481, 552, 602
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	5 cut(s)	269, 370, 477, 548, 598
FblI	GTMKAC	1 cut(s)	1163
Fnu4HI	GCNGC	4 cut(s)	47, 299, 559, 1137
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	2 cut(s)	60, 743
Fsp4HI	GCNGC	4 cut(s)	47, 299, 559, 1137
GlaI	GCGC	1 cut(s)	937
GluI	GCNGC	4 cut(s)	47, 299, 559, 1137
GsaI	CCCAGC	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	49, 96, 135, 1003
HapII	CCGG	3 cut(s)	83, 93, 670
HhaI	GCGC	1 cut(s)	938
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	273, 374, 481, 552, 602
Hin6I	GCGC	1 cut(s)	936
HinP1I	GCGC	1 cut(s)	936
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	8 cut(s)	117, 206, 409, 545, 590, 603, 818, 1219
HpaII	CCGG	3 cut(s)	83, 93, 670
HphI	GGTGA	4 cut(s)	61, 312, 554, 962
Hpy166II	GTNNAC	2 cut(s)	336, 1164
Hpy188I	TCNGA	4 cut(s)	394, 804, 1144, 1224
Hpy8I	GTNNAC	2 cut(s)	336, 1164
Hpy99I	CGWCG	4 cut(s)	20, 23, 26, 316
HpyAV	CCTTC	3 cut(s)	146, 618, 949
HpyCH4III	ACNGT	4 cut(s)	73, 770, 942, 1017
HpyCH4IV	ACGT	5 cut(s)	21, 183, 311, 338, 979
HpyCH4V	TGCA	5 cut(s)	63, 114, 370, 992, 1107
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 60, 102, 111, 354
HpyF3I	CTNAG	4 cut(s)	391, 683, 803, 1215
HpySE526I	ACGT	5 cut(s)	21, 183, 311, 338, 979
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	273, 374, 481, 552, 602
HspAI	GCGC	1 cut(s)	936
Kzo9I	GATC	3 cut(s)	30, 919, 1144
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	2 cut(s)	310, 545
LweI	GCATC	3 cut(s)	72, 954, 1148
MaeII	ACGT	5 cut(s)	21, 183, 311, 338, 979
MaeIII	GTNAC	5 cut(s)	376, 424, 718, 975, 1075
MalI	GATC	3 cut(s)	32, 921, 1146
MboI	GATC	3 cut(s)	30, 919, 1144
MboII	GAAGA	6 cut(s)	253, 644, 718, 1065, 1190, 1254
MfeI	CAATTG	3 cut(s)	76, 524, 1080
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	2 cut(s)	60, 743
MluCI	AATT	7 cut(s)	76, 227, 235, 524, 730, 846, 1080
MlyI	GAGTC	2 cut(s)	554, 812
MnlI	CCTC	7 cut(s)	107, 134, 328, 359, 992, 1122, 1150
Mph1103I	ATGCAT	1 cut(s)	1109
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	1 cut(s)	861
MspA1I	CMGCKG	2 cut(s)	558, 571
MspI	CCGG	3 cut(s)	83, 93, 670
MspR9I	CCNGG	3 cut(s)	51, 83, 670
MunI	CAATTG	3 cut(s)	76, 524, 1080
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	5 cut(s)	55, 60, 102, 111, 354
NciI	CCSGG	2 cut(s)	83, 670
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	3 cut(s)	30, 919, 1144
NlaIII	CATG	5 cut(s)	273, 374, 481, 552, 602
NlaIV	GGNNCC	2 cut(s)	580, 921
NmeAIII	GCCGAG	2 cut(s)	36, 1094
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	873
NsiI	ATGCAT	1 cut(s)	1109
PciSI	GCTCTTC	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	6 cut(s)	117, 206, 409, 590, 603, 1219
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	48, 300, 560, 1138
PleI	GAGTC	2 cut(s)	553, 812
PpsI	GAGTC	2 cut(s)	553, 812
Ppu21I	YACGTR	2 cut(s)	184, 980
PpuMI	RGGWCCY	1 cut(s)	578
PsiI	TTATAA	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	580, 921
PspPI	GGNCC	4 cut(s)	454, 481, 578, 1001
PspPPI	RGGWCCY	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	919
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	2 cut(s)	558, 571
RruI	TCGCGA	1 cut(s)	873
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	4 cut(s)	47, 299, 559, 1137
Sau3AI	GATC	3 cut(s)	30, 919, 1144
Sau96I	GGNCC	4 cut(s)	454, 481, 578, 1001
SchI	GAGTC	2 cut(s)	554, 812
ScrFI	CCNGG	3 cut(s)	51, 83, 670
SduI	GDGCHC	2 cut(s)	60, 743
SfaNI	GCATC	3 cut(s)	72, 954, 1148
SinI	GGWCC	3 cut(s)	454, 481, 578
SmlI	CTYRAG	2 cut(s)	398, 675
SmoI	CTYRAG	2 cut(s)	398, 675
SnaBI	TACGTA	1 cut(s)	184
Sse9I	AATT	7 cut(s)	76, 227, 235, 524, 730, 846, 1080
SsiI	CCGC	5 cut(s)	46, 355, 623, 949, 1136
SspI	AATATT	1 cut(s)	859
StyD4I	CCNGG	3 cut(s)	49, 81, 668
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	4 cut(s)	73, 770, 942, 1017
TaiI	ACGT	5 cut(s)	24, 186, 314, 341, 982
TaqI	TCGA	4 cut(s)	126, 161, 351, 407
TasI	AATT	7 cut(s)	76, 227, 235, 524, 730, 846, 1080
TauI	GCSGC	2 cut(s)	49, 1139
TfiI	GAWTC	6 cut(s)	117, 206, 409, 590, 603, 1219
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	4 cut(s)	228, 282, 773, 945
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	2 cut(s)	298, 558
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	2 cut(s)	603, 877
TspRI	CASTG	4 cut(s)	228, 282, 773, 945
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	454, 481, 578
XapI	RAATTY	2 cut(s)	235, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	1163
XmnI	GAANNNNTTC	1 cut(s)	607
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.