Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

57125487 .. 57141656

Gene Structure 16170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGCCCTAGGAGAGTACTGTATCACCTGTGAGGTTCAGTTGGCAGGGCCTGAATATGAAAGTTTGCAGGGAAATTATTCTCTTCCATCAGCAATTGCCGAAGAATTATTTAGCTATCGGCTAACAGATGACAAAGCTTGTCCGAAAGCTCTCAGCCCAAGTTTGGCAACAGTGAAAAACACAAGTATTACGTTGGATAATACACTGAGCCCTGTTCATACGTTGCTGCAAATACAATGTGTGGATCAAAAGGGCCTCTTTTATGACGTACTAAGGACTTCCAAGGATTGCAAAATTCAGATTGCCTATGCTAGATTCTCTTCTACTGTCAAAGGCATCCGAAATTTGGAACTGTTTATTCAGCACACAGATGGGAAAAAGATTGTAGATCCTGAAAGACAGGTTGCATTGTGTTCTCGGTTGAAGGAGGAGATGCTTCACCCGCTGAGAGTGATCATTGCCAACAAGGGTCCAGATACTGAACTCCTAGTCGCTAATCCAGTTGAGTTATCTGGAAAAGGACGGCCCCTCGTCTTTTATGATGTTACTCTTGCACTGAAAAAGTTGGGAATATCTATTTTCTTGGCTGAAATTGTAAGGCATGAGACTGAAGATTGCCAGTGGGAAGTCTATAGATTTCTTTTGGATGATAGTCGAGAATTTCCTTTGGGGAACAGAGAAGCTAGAAATAAGATTGTACAAAGAGTTAGAAGAACTTTGATGGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

6.9

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT_ACR9_3rd	PF24931	63 - 160	2.4e-46	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	161 - 243	4.1e-38	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	255, 386
AcsI	RAATTY	3 cut(s)	297, 346, 662
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	20, 273, 702
AfiI	CCNNNNNNNGG	2 cut(s)	166, 349
AgsI	TTSAA	1 cut(s)	427
AluBI	AGCT	4 cut(s)	117, 140, 152, 686
AluI	AGCT	4 cut(s)	117, 140, 152, 686
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	255, 386
AlwNI	CAGNNNCTG	2 cut(s)	53, 482
AoxI	GGCC	3 cut(s)	50, 256, 527
ApeKI	GCWGC	2 cut(s)	5, 229
ApoI	RAATTY	3 cut(s)	297, 346, 662
Asp700I	GAANNNNTTC	1 cut(s)	79
AspA2I	CCTAGG	1 cut(s)	10
AspS9I	GGNCC	4 cut(s)	50, 256, 473, 528
AsuHPI	GGTGA	2 cut(s)	19, 434
AvaII	GGWCC	1 cut(s)	473
AvrII	CCTAGG	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	4 cut(s)	97, 368, 718, 723
BceAI	ACGGC	1 cut(s)	542
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	4 cut(s)	11, 315, 491, 687
BfmI	CTRYAG	1 cut(s)	634
BisI	GCNGC	2 cut(s)	6, 230
BlnI	CCTAGG	1 cut(s)	10
BlsI	GCNGC	2 cut(s)	7, 231
BmcAI	AGTACT	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	4 cut(s)	50, 256, 473, 528
BmiI	GGNNCC	2 cut(s)	474, 530
BmsI	GCATC	2 cut(s)	348, 426
BsaJI	CCNNGG	2 cut(s)	10, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 349
Bse1I	ACTGG	2 cut(s)	503, 622
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	10, 285
BseGI	GGATG	3 cut(s)	339, 655, 734
BseLI	CCNNNNNNNGG	2 cut(s)	166, 349
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	169, 200, 440
BseNI	ACTGG	2 cut(s)	503, 622
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	3 cut(s)	52, 258, 529
BslI	CCNNNNNNNGG	2 cut(s)	166, 349
BsmAI	GTCTC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	52, 258, 529
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	247, 391, 456
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	3 cut(s)	52, 258, 529
BspCNI	CTCAG	3 cut(s)	168, 201, 441
BspLI	GGNNCC	2 cut(s)	474, 530
BspPI	GGATC	2 cut(s)	255, 386
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	503, 622
BssECI	CCNNGG	2 cut(s)	10, 285
BssMI	GATC	3 cut(s)	247, 391, 456
BssT1I	CCWWGG	2 cut(s)	10, 285
Bst4CI	ACNGT	4 cut(s)	23, 175, 331, 357
Bst6I	CTCTTC	2 cut(s)	90, 328
BstAUI	TGTACA	1 cut(s)	700
BstDEI	CTNAG	4 cut(s)	155, 209, 275, 449
BstF5I	GGATG	3 cut(s)	339, 655, 734
BstKTI	GATC	3 cut(s)	250, 394, 459
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	3 cut(s)	247, 391, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	634
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	52, 258, 529
BtsCI	GGATG	3 cut(s)	339, 655, 734
BtsIMutI	CAGTG	4 cut(s)	180, 206, 557, 629
CaiI	CAGNNNCTG	2 cut(s)	53, 482
Cfr13I	GGNCC	4 cut(s)	50, 256, 473, 528
Csp6I	GTAC	3 cut(s)	19, 272, 701
CviAII	CATG	1 cut(s)	605
CviQI	GTAC	3 cut(s)	19, 272, 701
DdeI	CTNAG	4 cut(s)	155, 209, 275, 449
DpnI	GATC	3 cut(s)	249, 393, 458
DpnII	GATC	3 cut(s)	247, 391, 456
Eam1104I	CTCTTC	2 cut(s)	90, 328
EarI	CTCTTC	2 cut(s)	90, 328
Eco130I	CCWWGG	2 cut(s)	10, 285
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	633
EcoO109I	RGGNCCY	2 cut(s)	50, 256
EcoT14I	CCWWGG	2 cut(s)	10, 285
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	2 cut(s)	10, 285
FaeI	CATG	1 cut(s)	608
FaiI	YATR	7 cut(s)	60, 222, 267, 312, 543, 606, 636
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	1 cut(s)	604
FauI	CCCGC	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	6, 230
FokI	GGATG	2 cut(s)	326, 662
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	6, 230
FspBI	CTAG	4 cut(s)	11, 315, 491, 687
GluI	GCNGC	2 cut(s)	6, 230
HaeIII	GGCC	3 cut(s)	52, 258, 529
Hin1II	CATG	1 cut(s)	608
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	2 cut(s)	19, 434
Hpy188I	TCNGA	3 cut(s)	147, 303, 344
Hpy188III	TCNNGA	4 cut(s)	395, 476, 516, 659
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	23, 175, 331, 357
HpyCH4IV	ACGT	3 cut(s)	194, 224, 270
HpyCH4V	TGCA	5 cut(s)	70, 232, 294, 410, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	4 cut(s)	155, 209, 275, 449
HpySE526I	ACGT	3 cut(s)	194, 224, 270
Hsp92II	CATG	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	247, 391, 456
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	348, 426
MaeI	CTAG	4 cut(s)	11, 315, 491, 687
MaeII	ACGT	3 cut(s)	194, 224, 270
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	249, 393, 458
MboI	GATC	3 cut(s)	247, 391, 456
MboII	GAAGA	5 cut(s)	77, 116, 315, 626, 726
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	7 cut(s)	76, 96, 107, 297, 346, 594, 662
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	28, 269, 424, 542
MroXI	GAANNNNTTC	1 cut(s)	79
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	3 cut(s)	247, 391, 456
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	2 cut(s)	474, 530
PdmI	GAANNNNTTC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	7, 231
PspN4I	GGNNCC	2 cut(s)	474, 530
PspPI	GGNCC	4 cut(s)	50, 256, 473, 528
PstNI	CAGNNNCTG	2 cut(s)	53, 482
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	3 cut(s)	20, 273, 702
RsaNI	GTAC	3 cut(s)	19, 272, 701
RseI	CAYNNNNRTG	1 cut(s)	372
SatI	GCNGC	2 cut(s)	6, 230
Sau3AI	GATC	3 cut(s)	247, 391, 456
Sau96I	GGNCC	4 cut(s)	50, 256, 473, 528
ScaI	AGTACT	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	348, 426
SfcI	CTRYAG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	7 cut(s)	76, 96, 107, 297, 346, 594, 662
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	4 cut(s)	11, 315, 491, 687
StyI	CCWWGG	2 cut(s)	10, 285
TaaI	ACNGT	4 cut(s)	23, 175, 331, 357
TaiI	ACGT	3 cut(s)	197, 227, 273
TaqI	TCGA	1 cut(s)	658
TasI	AATT	7 cut(s)	76, 96, 107, 297, 346, 594, 662
TatI	WGTACW	2 cut(s)	18, 700
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	4 cut(s)	180, 213, 564, 629
TseI	GCWGC	2 cut(s)	5, 229
TspDTI	ATGAA	2 cut(s)	75, 209
TspRI	CASTG	4 cut(s)	180, 213, 564, 629
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	3 cut(s)	297, 346, 662
XmaJI	CCTAGG	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	79
XspI	CTAG	4 cut(s)	11, 315, 491, 687
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.