Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

23735214 .. 23738742

Gene Structure 3529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1124500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGCATTCCCTGCGACGACATCGTCGTTATCAAGCCGGGGAAGGCTCCTGACGAGCCCTCCGTCCTCACCGTCAACTATTTCTCGACGGATGGAAGGTGGTGCTATATAGTGCTGTGGGTCGTCCCCCACCACGAATCCCTGAAGGTCGATTGGGAGAGGTTGAAGGATCGGCTCTCGTCCGCGTGCCCGTCGTCGTGCTTCTTCTCGTTTTATCTCAATCAATTCTCCAACGTCCCAACGCCCTCTCCGGTCTATCTGTTGAAGTTTTGGTGCCACGACCAGAGAGGCTCACTCCACGATGTTACCAAAGTGCTCTGTGAGCTTGAAATTCTGATTCAGAGAGTGAAAGTGATGCCGACCCCGGATGGCCGAGTTTTGGACCTCTTCTTCATCACAGATTGCTTGGAGTTGTTACACACAAAACAGAGAAGAGACGACATATGTGAGCATCTGATGGCTGCTTTAGGAGAGTACTGCATCACCTGTGAGCTTAAGTTGCCTGGACCTGAGTATGAAAGTCTGCAGGGGAATTCTTCTCTTCCACCAGCCATTGCTGACGAATTATTTAGCTATCAGCTGAAGGATGAGGAGGCTTATCCAAAAGCTCTCACCCAGAACATGGGAACGGTGAACAAGACCAGTATTACAGTGGATAATTCATTGAGCCCTTTTCATACGGTGCTGCAAATACAGTGTGTTGATCGGAATGGCCTCTTTTATGACATTATGAGGACTTCCAAGGACTGCAATATTCAGATTGCCTATGGTAGATTCTCTTCACCTGTGAAAGGCTTCCGAAATTTGGACCTATTTATTCAGCAGACAAATGGAAAAAAGCTTGTTGATCCTGAAGTTCAGGTTGCATTGTGTAATCATTTAAAGGAGGAGATGGTTCACCCACTGAGAGTGATCGTTGCCAACAGGGGCCCAGAAACTGAACTCTTAGTTGCTAATCCAGTTGAGTTATCTGGAAAGGGGAGGCCCCTCGTATTCTACAATGTTACTCTAGCACTGAAACAATTGGGAGTATCTATTTTTGCGGCTGAAATTGTAAGGAATTCAACTTCAGTTTGCCAGTGGGAAATCTACCGATTTCTTTTGGATGATAGTCGTGAATTTCCATTGGTGCATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

380

Amino Acids

43.06

Weight (kDa)

5.62

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	28 - 64	1.2e-12	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	215 - 312	1.1e-44	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	313 - 374	4.3e-29	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	183, 1043
AclWI	GGATC	2 cut(s)	177, 842
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	5 cut(s)	330, 532, 802, 1060, 1118
AcuI	CTGAAG	4 cut(s)	164, 602, 873, 1053
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	4 cut(s)	379, 622, 791, 805
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	166, 265, 329, 1065
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	6 cut(s)	325, 493, 573, 580, 608, 841
AluI	AGCT	6 cut(s)	325, 493, 573, 580, 608, 841
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	177, 842
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	4 cut(s)	370, 712, 928, 983
ApaI	GGGCCC	1 cut(s)	932
ApeKI	GCWGC	2 cut(s)	461, 685
ApoI	RAATTY	5 cut(s)	330, 532, 802, 1060, 1118
Asp700I	GAANNNNTTC	1 cut(s)	794
AspS9I	GGNCC	6 cut(s)	382, 506, 808, 928, 929, 984
AsuC2I	CCSGG	2 cut(s)	39, 365
AsuHPI	GGTGA	6 cut(s)	61, 475, 604, 643, 774, 890
AvaII	GGWCC	3 cut(s)	382, 506, 808
BaeGI	GKGCMC	2 cut(s)	191, 932
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	3 cut(s)	60, 671, 932
BarI	GAAGNNNNNNTAC	2 cut(s)	763, 795
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	448, 672
BccI	CCATC	4 cut(s)	86, 362, 451, 886
BciT130I	CCWGG	1 cut(s)	504
BcnI	CCSGG	2 cut(s)	39, 365
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	1010
BfmI	CTRYAG	1 cut(s)	524
BfrI	CTTAAG	1 cut(s)	494
BisI	GCNGC	3 cut(s)	462, 686, 1044
BlsI	GCNGC	3 cut(s)	463, 687, 1045
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	3 cut(s)	39, 365, 504
Bme18I	GGWCC	3 cut(s)	382, 506, 808
BmgT120I	GGNCC	6 cut(s)	382, 506, 808, 928, 929, 984
BmiI	GGNNCC	5 cut(s)	48, 275, 929, 930, 986
BmrFI	CCNGG	3 cut(s)	39, 365, 504
BmsI	GCATC	3 cut(s)	345, 460, 489
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuMI	CCSGG	2 cut(s)	39, 365
BsaJI	CCNNGG	3 cut(s)	38, 363, 741
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 232, 262
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 622, 791, 805
Bse1I	ACTGG	3 cut(s)	642, 959, 1078
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	38, 363, 741
BseGI	GGATG	4 cut(s)	97, 373, 592, 1111
BseLI	CCNNNNNNNGG	4 cut(s)	379, 622, 791, 805
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	501, 896
BseNI	ACTGG	3 cut(s)	642, 959, 1078
BseRI	GAGGAG	2 cut(s)	605, 902
BseSI	GKGCMC	2 cut(s)	191, 932
BseXI	GCAGC	2 cut(s)	448, 672
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	4 cut(s)	372, 714, 930, 985
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	3 cut(s)	38, 251, 365
BslFI	GGGAC	2 cut(s)	110, 221
BslI	CCNNNNNNNGG	4 cut(s)	379, 622, 791, 805
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	110, 221
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	372, 714, 930, 985
Bsp120I	GGGCCC	1 cut(s)	928
Bsp1286I	GDGCHC	5 cut(s)	60, 191, 318, 671, 932
Bsp143I	GATC	4 cut(s)	169, 703, 847, 912
BspACI	CCGC	2 cut(s)	183, 1043
BspANI	GGCC	4 cut(s)	372, 714, 930, 985
BspCNI	CTCAG	2 cut(s)	502, 897
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	5 cut(s)	48, 275, 929, 930, 986
BspMAI	CTGCAG	1 cut(s)	528
BspPI	GGATC	2 cut(s)	177, 842
BspT107I	GGYRCC	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	642, 959, 1078
BssECI	CCNNGG	3 cut(s)	38, 363, 741
BssMI	GATC	4 cut(s)	169, 703, 847, 912
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	5 cut(s)	73, 631, 652, 682, 696
Bst6I	CTCTTC	4 cut(s)	392, 427, 546, 784
BstAFI	CTTAAG	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	510, 905, 946
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	4 cut(s)	97, 373, 592, 1111
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	4 cut(s)	172, 706, 850, 915
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	169, 703, 847, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 322, 499
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	37, 363, 502
BstSFI	CTRYAG	1 cut(s)	524
BstSLI	GKGCMC	2 cut(s)	191, 932
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	448, 672
BsuRI	GGCC	4 cut(s)	372, 714, 930, 985
BtsCI	GGATG	4 cut(s)	97, 373, 592, 1111
BtsIMutI	CAGTG	5 cut(s)	657, 701, 902, 1013, 1085
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	938
Cfr13I	GGNCC	6 cut(s)	382, 506, 808, 928, 929, 984
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	510, 905, 946
DpnI	GATC	4 cut(s)	171, 705, 849, 914
DpnII	GATC	4 cut(s)	169, 703, 847, 912
DraI	TTTAAA	1 cut(s)	882
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	4 cut(s)	392, 427, 546, 784
EarI	CTCTTC	4 cut(s)	392, 427, 546, 784
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	3 cut(s)	60, 671, 932
Eco47I	GGWCC	3 cut(s)	382, 506, 808
Eco57I	CTGAAG	4 cut(s)	164, 602, 873, 1053
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoO109I	RGGNCCY	2 cut(s)	928, 984
EcoRI	GAATTC	2 cut(s)	532, 1060
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	3 cut(s)	60, 671, 932
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	1 cut(s)	625
FaqI	GGGAC	2 cut(s)	110, 221
FatI	CATG	1 cut(s)	621
FauNDI	CATATG	1 cut(s)	443
Fnu4HI	GCNGC	3 cut(s)	462, 686, 1044
FokI	GGATG	4 cut(s)	104, 380, 599, 1118
FriOI	GRGCYC	3 cut(s)	60, 671, 932
Fsp4HI	GCNGC	3 cut(s)	462, 686, 1044
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	3 cut(s)	462, 686, 1044
HaeIII	GGCC	4 cut(s)	372, 714, 930, 985
HapII	CCGG	3 cut(s)	38, 251, 365
Hin1II	CATG	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	3 cut(s)	137, 337, 774
HpaII	CCGG	3 cut(s)	38, 251, 365
HphI	GGTGA	6 cut(s)	61, 475, 604, 643, 774, 890
Hpy166II	GTNNAC	3 cut(s)	76, 634, 898
Hpy188I	TCNGA	6 cut(s)	336, 342, 456, 708, 759, 800
Hpy188III	TCNNGA	5 cut(s)	50, 85, 851, 972, 1115
Hpy8I	GTNNAC	3 cut(s)	76, 634, 898
Hpy99I	CGWCG	5 cut(s)	20, 29, 91, 196, 199
HpyAV	CCTTC	5 cut(s)	37, 90, 139, 160, 577
HpyCH4III	ACNGT	5 cut(s)	73, 631, 652, 682, 696
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	6 cut(s)	480, 526, 688, 750, 866, 1132
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 322, 499
HpyF3I	CTNAG	3 cut(s)	510, 905, 946
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	169, 703, 847, 912
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	448, 672
LweI	GCATC	3 cut(s)	345, 460, 489
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	304, 414, 1003
MalI	GATC	4 cut(s)	171, 705, 849, 914
MboI	GATC	4 cut(s)	169, 703, 847, 912
MboII	GAAGA	7 cut(s)	196, 379, 382, 444, 528, 533, 771
MfeI	CAATTG	1 cut(s)	1022
MhlI	GDGCHC	5 cut(s)	60, 191, 318, 671, 932
MmeI	TCCRAC	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	2 cut(s)	495, 881
MspA1I	CMGCKG	1 cut(s)	580
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	3 cut(s)	38, 251, 365
MspR9I	CCNGG	3 cut(s)	39, 365, 504
MunI	CAATTG	1 cut(s)	1022
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	12, 322, 499
NciI	CCSGG	2 cut(s)	39, 365
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	4 cut(s)	169, 703, 847, 912
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	5 cut(s)	48, 275, 929, 930, 986
NmeAIII	GCCGAG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 60
PctI	GAATGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	3 cut(s)	137, 337, 774
PflFI	GACNNNGTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	463, 687, 1045
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	5 cut(s)	48, 275, 929, 930, 986
PspOMI	GGGCCC	1 cut(s)	928
PspPI	GGNCC	6 cut(s)	382, 506, 808, 928, 929, 984
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	938
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	495, 881
SatI	GCNGC	3 cut(s)	462, 686, 1044
Sau3AI	GATC	4 cut(s)	169, 703, 847, 912
Sau96I	GGNCC	6 cut(s)	382, 506, 808, 928, 929, 984
ScaI	AGTACT	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	39, 365, 504
SduI	GDGCHC	5 cut(s)	60, 191, 318, 671, 932
SfaNI	GCATC	3 cut(s)	345, 460, 489
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	3 cut(s)	382, 506, 808
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
SsiI	CCGC	2 cut(s)	183, 1043
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	3 cut(s)	37, 363, 502
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	73, 631, 652, 682, 696
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	86, 150
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	3 cut(s)	137, 337, 774
Tru1I	TTAA	2 cut(s)	495, 881
Tru9I	TTAA	2 cut(s)	495, 881
TscAI	CASTG	5 cut(s)	657, 701, 909, 1020, 1085
TseI	GCWGC	2 cut(s)	461, 685
TspDTI	ATGAA	4 cut(s)	382, 531, 651, 665
TspGWI	ACGGA	2 cut(s)	52, 104
TspRI	CASTG	5 cut(s)	657, 701, 909, 1020, 1085
Tth111I	GACNNNGTC	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	622
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	3 cut(s)	382, 506, 808
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	5 cut(s)	330, 532, 802, 1060, 1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	1 cut(s)	1010
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.