Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

25575263 .. 25578075

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGCATTCCGTGCGACGACGTCGTTGTGATCAAGGAGGGCAAGACTCCCAGCGAGCCTTCCGTCGTCACGGTCAATTGTCCCGACAAGGCCGGCCTCGGCTGCGACCTCTGCAGAATTATCCTCCAGTTTGGCCTTTGCGTTACGAAGGGAGATTTTTCGACGGATGGAAGATGGTGTTATATAGTGTTGTGGGTTGTTCCCCATCACAGCTCGCTCAAGGTTGATTGGGAGAGCTTGAAGGATCGGCTTTCCTCTGCGTGCCCACCTTCGTGTTTCTTCTCTTTTTACCTCAATCAAGTCTCTAATGTCCCCACACCTCCTCCAGTCTATCTGTTGAAGTTTTGGTGCCATGACCAGAGAGGCTCACTGCATGATGTTACCAAAATCCTCTGTGAGCTTGAAATTCTGATTCAAAGAGTCAAAGTGATGCCCACCCCAGATGGCAGAGTTTTGGACCTCTTCTTCATCACAGATTGCCTGGACCTGTTACACACAAAACAGAGGAGAGATAACATATGTGAGCATCTGATGGCTGCTTTAGGAGAGTATTGTATCACCTGTGAGCTTAAGTTGCCAGGGCCTGAGTATGAAAGTCTGCAGGGAAATTCTTCTCTTCCACCAGCCATTGCTGAAGAATTATTTAGCTATCAGCTGAAGGATGAGGAAGCCTATCCAAAAGCTCTCAGCTCAAATATGGGAGCGGTCAAAAAGGCTAGTATTACAGTGGATAACTCATTGAGCCCTGTTCATACGGTGCTGCAAATAGAGTGTGTTGATCAAAAGGGCCTCTTTTATGACGTTCTGAGGACTTCCAAGGATTGCAATATTCAGATCGCTTATGGTAGATTCTCTTCAACTAAGAAAGGCTTCCGAAATTTGGACCTATTTATTCGGCAAACAGATGGAAAAAAGATTGGGGATCCTGAAAGTCAGGTTGCATTGTGTTCTCGTTTAAAGGAGGAGATGGTTCACCCATTGCGAGTGATCATTGCGAACAGGGGCCCAGATATCGAACTCCTAGTTGCTAATCCAGTTGAGTTATGTGGAAAGGGGAGGCCCCTTGTGTTCTATGATGTTACACTAGCACTAAAAAAATTGAGAGTATCTATTTTCGCGGCTGAAATTGTAAGGCATTCAACTTTAGATTGCCAGTGGGAAGTCTACAGATTTCTTCTGGATGATAGTCGTGAATTTCCATTGTCCAGCAAACAAGCTAGAGGTAAGATTGTAGAGAAAGTTAGAAGAACGTTGATGGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

422

Amino Acids

47.45

Weight (kDa)

6.75

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	1164
AccII	CGCG	1 cut(s)	1118
AciI	CCGC	2 cut(s)	704, 1118
AclI	AACGTT	1 cut(s)	1250
AclWI	GGATC	3 cut(s)	252, 917, 930
AcsI	RAATTY	4 cut(s)	405, 607, 877, 1193
AcuI	CTGAAG	2 cut(s)	654, 677
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	880
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	6 cut(s)	241, 340, 404, 416, 858, 1140
AjnI	CCWGG	2 cut(s)	480, 577
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	9 cut(s)	213, 237, 400, 568, 648, 655, 683, 690, 1217
AluI	AGCT	9 cut(s)	213, 237, 400, 568, 648, 655, 683, 690, 1217
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	3 cut(s)	252, 917, 930
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	7 cut(s)	90, 94, 133, 581, 787, 1003, 1058
ApaI	GGGCCC	1 cut(s)	1007
ApeKI	GCWGC	3 cut(s)	102, 536, 760
ApoI	RAATTY	4 cut(s)	405, 607, 877, 1193
Asp700I	GAANNNNTTC	2 cut(s)	610, 869
AspS9I	GGNCC	8 cut(s)	457, 484, 581, 787, 883, 1003, 1004, 1059
AsuHPI	GGTGA	2 cut(s)	550, 965
AvaII	GGWCC	3 cut(s)	457, 484, 883
BaeGI	GKGCMC	2 cut(s)	266, 1007
BamHI	GGATCC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	746, 1007
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BbvI	GCAGC	3 cut(s)	89, 523, 747
BccI	CCATC	8 cut(s)	161, 168, 213, 437, 526, 899, 961, 1249
BciT130I	CCWGG	2 cut(s)	482, 579
BclI	TGATCA	3 cut(s)	30, 778, 987
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	4 cut(s)	717, 1022, 1085, 1218
BfmI	CTRYAG	3 cut(s)	112, 599, 1165
BfrI	CTTAAG	1 cut(s)	569
BisI	GCNGC	4 cut(s)	103, 537, 761, 1119
BlsI	GCNGC	4 cut(s)	104, 538, 762, 1120
Bme1390I	CCNGG	2 cut(s)	482, 579
Bme18I	GGWCC	3 cut(s)	457, 484, 883
BmgT120I	GGNCC	8 cut(s)	457, 484, 581, 787, 883, 1003, 1004, 1059
BmiI	GGNNCC	5 cut(s)	350, 924, 1004, 1005, 1061
BmrFI	CCNGG	2 cut(s)	482, 579
BmsI	GCATC	2 cut(s)	420, 535
BpmI	CTGGAG	2 cut(s)	110, 309
BpuEI	CTTGAG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	97, 578, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	127, 326, 1034, 1153
Bse3DI	GCAATG	3 cut(s)	627, 977, 990
BseBI	CCWGG	2 cut(s)	482, 579
BseDI	CCNNGG	3 cut(s)	97, 578, 816
BseGI	GGATG	3 cut(s)	172, 667, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMI	GCAATG	3 cut(s)	627, 977, 990
BseMII	CTCAG	3 cut(s)	576, 700, 797
BseNI	ACTGG	4 cut(s)	127, 326, 1034, 1153
BseRI	GAGGAG	3 cut(s)	312, 520, 977
BseSI	GKGCMC	2 cut(s)	266, 1007
BseXI	GCAGC	3 cut(s)	89, 523, 747
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	1118
BshFI	GGCC	7 cut(s)	92, 96, 135, 583, 789, 1005, 1060
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	66, 296
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	66, 296
BsmI	GAATGC	2 cut(s)	6, 1135
BsnI	GGCC	7 cut(s)	92, 96, 135, 583, 789, 1005, 1060
Bsp120I	GGGCCC	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	266, 746, 1007
Bsp143I	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
BspACI	CCGC	2 cut(s)	704, 1118
BspANI	GGCC	7 cut(s)	92, 96, 135, 583, 789, 1005, 1060
BspCNI	CTCAG	3 cut(s)	577, 699, 798
BspFNI	CGCG	1 cut(s)	1118
BspLI	GGNNCC	5 cut(s)	350, 924, 1004, 1005, 1061
BspMAI	CTGCAG	2 cut(s)	116, 603
BspPI	GGATC	3 cut(s)	252, 917, 930
BspT107I	GGYRCC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	704
BsrDI	GCAATG	3 cut(s)	627, 977, 990
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	127, 326, 1034, 1153
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	97, 578, 816
BssMI	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	482, 579
Bst4CI	ACNGT	3 cut(s)	73, 727, 757
Bst6I	CTCTTC	3 cut(s)	467, 621, 859
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	56, 94, 215, 262
BstDEI	CTNAG	4 cut(s)	585, 686, 806, 861
BstF5I	GGATG	3 cut(s)	172, 667, 1186
BstFNI	CGCG	1 cut(s)	1118
BstKTI	GATC	6 cut(s)	33, 247, 781, 837, 925, 990
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 102, 111, 574
BstNI	CCWGG	2 cut(s)	482, 579
BstSCI	CCNGG	2 cut(s)	480, 577
BstSFI	CTRYAG	3 cut(s)	112, 599, 1165
BstSLI	GKGCMC	2 cut(s)	266, 1007
BstUI	CGCG	1 cut(s)	1118
BstV1I	GCAGC	3 cut(s)	89, 523, 747
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	7 cut(s)	92, 96, 135, 583, 789, 1005, 1060
BtsCI	GGATG	3 cut(s)	172, 667, 1186
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	3 cut(s)	368, 732, 1160
Cac8I	GCNNGC	4 cut(s)	56, 94, 215, 262
CaiI	CAGNNNCTG	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	8 cut(s)	457, 484, 581, 787, 883, 1003, 1004, 1059
CviAII	CATG	2 cut(s)	353, 374
DdeI	CTNAG	4 cut(s)	585, 686, 806, 861
DpnI	GATC	6 cut(s)	32, 246, 780, 836, 924, 989
DpnII	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
DraI	TTTAAA	1 cut(s)	957
Eam1104I	CTCTTC	3 cut(s)	467, 621, 859
EarI	CTCTTC	3 cut(s)	467, 621, 859
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	2 cut(s)	746, 1007
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	3 cut(s)	457, 484, 883
Eco57I	CTGAAG	2 cut(s)	654, 677
EcoO109I	RGGNCCY	4 cut(s)	581, 787, 1003, 1059
EcoRII	CCWGG	2 cut(s)	480, 577
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	2 cut(s)	746, 1007
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	2 cut(s)	356, 377
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 854, 886
FaqI	GGGAC	2 cut(s)	66, 296
FatI	CATG	2 cut(s)	352, 373
FauNDI	CATATG	1 cut(s)	518
FbaI	TGATCA	3 cut(s)	30, 778, 987
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	4 cut(s)	103, 537, 761, 1119
FokI	GGATG	3 cut(s)	179, 674, 1193
FriOI	GRGCYC	2 cut(s)	746, 1007
FseI	GGCCGGCC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	103, 537, 761, 1119
FspBI	CTAG	4 cut(s)	717, 1022, 1085, 1218
GluI	GCNGC	4 cut(s)	103, 537, 761, 1119
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	110, 309
HaeIII	GGCC	7 cut(s)	92, 96, 135, 583, 789, 1005, 1060
HapII	CCGG	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	356, 377
HinfI	GANTC	4 cut(s)	46, 412, 420, 849
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	550, 965
Hpy166II	GTNNAC	2 cut(s)	973, 1165
Hpy188I	TCNGA	5 cut(s)	411, 531, 807, 834, 875
Hpy188III	TCNNGA	4 cut(s)	83, 926, 1178, 1190
Hpy8I	GTNNAC	2 cut(s)	973, 1165
Hpy99I	CGWCG	5 cut(s)	20, 23, 26, 68, 166
HpyAV	CCTTC	5 cut(s)	69, 142, 235, 279, 652
HpyCH4III	ACNGT	3 cut(s)	73, 727, 757
HpyCH4IV	ACGT	3 cut(s)	21, 801, 1250
HpyCH4V	TGCA	6 cut(s)	114, 373, 601, 763, 825, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 102, 111, 574
HpyF3I	CTNAG	4 cut(s)	585, 686, 806, 861
HpySE526I	ACGT	3 cut(s)	21, 801, 1250
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	356, 377
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	3 cut(s)	30, 778, 987
Kzo9I	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	3 cut(s)	89, 523, 747
LweI	GCATC	2 cut(s)	420, 535
MaeI	CTAG	4 cut(s)	717, 1022, 1085, 1218
MaeII	ACGT	3 cut(s)	21, 801, 1250
MaeIII	GTNAC	5 cut(s)	67, 142, 379, 489, 1078
MalI	GATC	6 cut(s)	32, 246, 780, 836, 924, 989
MbiI	CCGCTC	1 cut(s)	704
MboI	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	3 cut(s)	266, 746, 1007
MluCI	AATT	9 cut(s)	76, 117, 405, 607, 638, 877, 1097, 1125, 1193
MlyI	GAGTC	2 cut(s)	40, 429
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	2 cut(s)	610, 869
MseI	TTAA	2 cut(s)	570, 956
MslI	CAYNNNNRTG	1 cut(s)	271
MspA1I	CMGCKG	1 cut(s)	655
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	482, 579
MunI	CAATTG	1 cut(s)	76
Mva1269I	GAATGC	2 cut(s)	6, 1135
MvaI	CCWGG	2 cut(s)	482, 579
MvnI	CGCG	1 cut(s)	1118
MwoI	GCNNNNNNNGC	4 cut(s)	12, 102, 111, 574
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	356, 377
NlaIV	GGNNCC	5 cut(s)	350, 924, 1004, 1005, 1061
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	271
PctI	GAATGC	2 cut(s)	6, 1135
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	610, 869
PfeI	GAWTC	2 cut(s)	412, 849
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	104, 538, 762, 1120
PleI	GAGTC	2 cut(s)	40, 428
PpsI	GAGTC	2 cut(s)	40, 428
Psp1406I	AACGTT	1 cut(s)	1250
Psp6I	CCWGG	2 cut(s)	480, 577
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	480, 577
PspN4I	GGNNCC	5 cut(s)	350, 924, 1004, 1005, 1061
PspOMI	GGGCCC	1 cut(s)	1003
PspPI	GGNCC	8 cut(s)	457, 484, 581, 787, 883, 1003, 1004, 1059
PstI	CTGCAG	2 cut(s)	116, 603
PstNI	CAGNNNCTG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	922
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	655
RigI	GGCCGGCC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	570, 956
SatI	GCNGC	4 cut(s)	103, 537, 761, 1119
Sau3AI	GATC	6 cut(s)	30, 244, 778, 834, 922, 987
Sau96I	GGNCC	8 cut(s)	457, 484, 581, 787, 883, 1003, 1004, 1059
SchI	GAGTC	2 cut(s)	40, 429
ScrFI	CCNGG	2 cut(s)	482, 579
SduI	GDGCHC	3 cut(s)	266, 746, 1007
SfaNI	GCATC	2 cut(s)	420, 535
SfcI	CTRYAG	3 cut(s)	112, 599, 1165
SinI	GGWCC	3 cut(s)	457, 484, 883
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	218, 569
SmoI	CTYRAG	2 cut(s)	218, 569
Sse9I	AATT	9 cut(s)	76, 117, 405, 607, 638, 877, 1097, 1125, 1193
SsiI	CCGC	2 cut(s)	704, 1118
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	4 cut(s)	717, 1022, 1085, 1218
StyD4I	CCNGG	2 cut(s)	480, 577
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	3 cut(s)	73, 727, 757
TaiI	ACGT	3 cut(s)	24, 804, 1253
TaqI	TCGA	2 cut(s)	161, 1014
TasI	AATT	9 cut(s)	76, 117, 405, 607, 638, 877, 1097, 1125, 1193
TauI	GCSGC	1 cut(s)	1121
TfiI	GAWTC	2 cut(s)	412, 849
Tru1I	TTAA	2 cut(s)	570, 956
Tru9I	TTAA	2 cut(s)	570, 956
TscAI	CASTG	3 cut(s)	375, 732, 1160
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	102, 536, 760
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	457, 606, 740
TspGWI	ACGGA	2 cut(s)	52, 179
TspRI	CASTG	3 cut(s)	375, 732, 1160
Tth111I	GACNNNGTC	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	3 cut(s)	457, 484, 883
XapI	RAATTY	4 cut(s)	405, 607, 877, 1193
XmiI	GTMKAC	1 cut(s)	1164
XmnI	GAANNNNTTC	2 cut(s)	610, 869
XspI	CTAG	4 cut(s)	717, 1022, 1085, 1218
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.