Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

43403595 .. 43414607

Gene Structure 11013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGGTGGATTGGGAGAGGTTGAAGGAGCGGCTGCTCTCTGCTTGTCCGTCTTCGTGTTTCTATAAGGTTTACCTCAATATTCAGACCAGTGCTCCGTCGCCGTCGCCGGTTTACCTTTTGAAGTTTTGGTGCTTTGACCAGAGAGGCTCACTGCACGATGTTACTAAGGTGCTGTGTGAGCTTGAGATGCTGATTCAGAGGGTGAAAGTGATGCCAACTCCGGATGGGAGGGTTTTGGACCTGTTCTTCATCACGGATTGCTTAGATTTGCTACACACAAAAAAGAGGAGAGATGACATATGTGAGCATTTGATGGCTGCCCTAGGAGAGTACTGTATCACCTGTGAGGTTCAGTTGGCAGGGCCTGAATATGAAAGTTTGCAGGGAAATTATTCTCTTCCATCAGCAATTGCCGAAGAATTATTTAGCTATCAGCTAACAGATGACAAAGCTTGTCCGAAAGCTCTCAGCCCAAGTTTGGCAACAGTGAAAAACACAAGTATTACGTTGGATAATACACTGAGCCCTGTTCATACGTTGCTGCAAATACAATGTGTGGATCAAAAGGGCCTCTTTTATGACGTACTAAGGACTTCCAAGGATTGCAAAATTCAGATTGCCTATGGTAGATTCTCTTCTACTGTCAAAGGCATCCGAAATTTGGAACTGTTTATTCAGCACACAGATGGGAAAAAGATTGTAGATCCTGAAAGACAGGTTGCATTGTGTTCTCGGTTGAAGGAGGAGATGCTTCACCCGCTGAGAGTGATCATTGCCAACAAGGGTCCAGATACTGAACTCCTAGTCGCTAATCCAGTTGAGTTATCTGGAAAAGGACGGCCCCTTGTCTTTTATGATGTTACTCTTGCACTGAAAAAGTTGGGAATATCTATTTTCTTGGCTGAAATTGTAAGGCATGAGACTGAAGATTGCCAGTGGGAAGTCTATAGATTTCTTTTGGATGATAGTCGAGAATTTCCTTTGGGGAGCAGAGAAGCTAGAAATAAGATTGTACAAAGAGTTAGAAGAACATTGATGGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

349

Amino Acids

39.85

Weight (kDa)

7.02

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT_ACR9_3rd	PF24931	168 - 265	1.5e-46	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	266 - 348	4.8e-38	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	2 cut(s)	31, 761
AclWI	GGATC	2 cut(s)	570, 701
AcsI	RAATTY	3 cut(s)	612, 661, 977
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	3 cut(s)	335, 588, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	481, 664
AgsI	TTSAA	3 cut(s)	25, 124, 742
AluBI	AGCT	6 cut(s)	184, 432, 439, 455, 467, 1001
AluI	AGCT	6 cut(s)	184, 432, 439, 455, 467, 1001
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	2 cut(s)	570, 701
AlwNI	CAGNNNCTG	2 cut(s)	368, 797
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	3 cut(s)	365, 571, 842
ApeKI	GCWGC	3 cut(s)	34, 320, 544
ApoI	RAATTY	3 cut(s)	612, 661, 977
Asp700I	GAANNNNTTC	1 cut(s)	394
AspA2I	CCTAGG	1 cut(s)	325
AspS9I	GGNCC	5 cut(s)	241, 365, 571, 788, 843
AsuHPI	GGTGA	3 cut(s)	217, 334, 749
AvaII	GGWCC	2 cut(s)	241, 788
AvrII	CCTAGG	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	622, 654
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	21, 307, 531
BccI	CCATC	6 cut(s)	221, 310, 412, 683, 1033, 1038
BceAI	ACGGC	2 cut(s)	88, 857
BclI	TGATCA	1 cut(s)	771
BcoDI	GTCTC	1 cut(s)	917
BfaI	CTAG	3 cut(s)	326, 806, 1002
BfmI	CTRYAG	1 cut(s)	949
BisI	GCNGC	4 cut(s)	32, 35, 321, 545
BlnI	CCTAGG	1 cut(s)	325
BlsI	GCNGC	4 cut(s)	33, 36, 322, 546
BmcAI	AGTACT	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	241, 788
BmgT120I	GGNCC	5 cut(s)	241, 365, 571, 788, 843
BmiI	GGNNCC	2 cut(s)	789, 845
BmsI	GCATC	4 cut(s)	180, 204, 663, 741
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	325, 600
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 664
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	3 cut(s)	90, 818, 937
Bse3DI	GCAATG	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	325, 600
BseGI	GGATG	4 cut(s)	232, 654, 970, 1049
BseLI	CCNNNNNNNGG	2 cut(s)	481, 664
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	3 cut(s)	484, 515, 755
BseNI	ACTGG	3 cut(s)	90, 818, 937
BseRI	GAGGAG	2 cut(s)	304, 761
BseXI	GCAGC	3 cut(s)	21, 307, 531
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	367, 573, 844
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	110, 224
BslI	CCNNNNNNNGG	2 cut(s)	481, 664
BsmAI	GTCTC	1 cut(s)	917
BsnI	GGCC	3 cut(s)	367, 573, 844
Bsp1286I	GDGCHC	2 cut(s)	97, 530
Bsp13I	TCCGGA	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	3 cut(s)	562, 706, 771
BspACI	CCGC	2 cut(s)	31, 761
BspANI	GGCC	3 cut(s)	367, 573, 844
BspCNI	CTCAG	3 cut(s)	483, 516, 756
BspEI	TCCGGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	789, 845
BspPI	GGATC	2 cut(s)	570, 701
BsrBI	CCGCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	3 cut(s)	90, 818, 937
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	325, 600
BssMI	GATC	3 cut(s)	562, 706, 771
BssT1I	CCWWGG	2 cut(s)	325, 600
Bst4CI	ACNGT	4 cut(s)	338, 490, 646, 672
Bst6I	CTCTTC	2 cut(s)	405, 643
BstAUI	TGTACA	1 cut(s)	1015
BstDEI	CTNAG	6 cut(s)	168, 265, 470, 524, 590, 764
BstF5I	GGATG	4 cut(s)	232, 654, 970, 1049
BstKTI	GATC	3 cut(s)	565, 709, 774
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	3 cut(s)	562, 706, 771
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 190, 760
BstSFI	CTRYAG	1 cut(s)	949
BstV1I	GCAGC	3 cut(s)	21, 307, 531
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	367, 573, 844
BtsCI	GGATG	4 cut(s)	232, 654, 970, 1049
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	6 cut(s)	97, 152, 495, 521, 872, 944
CaiI	CAGNNNCTG	2 cut(s)	368, 797
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	5 cut(s)	241, 365, 571, 788, 843
Csp6I	GTAC	3 cut(s)	334, 587, 1016
CviAII	CATG	1 cut(s)	920
CviQI	GTAC	3 cut(s)	334, 587, 1016
DdeI	CTNAG	6 cut(s)	168, 265, 470, 524, 590, 764
DpnI	GATC	3 cut(s)	564, 708, 773
DpnII	GATC	3 cut(s)	562, 706, 771
Eam1104I	CTCTTC	2 cut(s)	405, 643
EarI	CTCTTC	2 cut(s)	405, 643
Eco130I	CCWWGG	2 cut(s)	325, 600
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	2 cut(s)	241, 788
Eco57I	CTGAAG	1 cut(s)	948
EcoO109I	RGGNCCY	2 cut(s)	365, 571
EcoT14I	CCWWGG	2 cut(s)	325, 600
EcoT38I	GRGCYC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	325, 600
FaeI	CATG	1 cut(s)	923
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	1 cut(s)	919
FauI	CCCGC	1 cut(s)	768
FauNDI	CATATG	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	4 cut(s)	32, 35, 321, 545
FokI	GGATG	3 cut(s)	239, 641, 977
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	4 cut(s)	32, 35, 321, 545
FspBI	CTAG	3 cut(s)	326, 806, 1002
GluI	GCNGC	4 cut(s)	32, 35, 321, 545
HaeIII	GGCC	3 cut(s)	367, 573, 844
HapII	CCGG	2 cut(s)	110, 224
Hin1II	CATG	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	2 cut(s)	196, 633
HpaII	CCGG	2 cut(s)	110, 224
HphI	GGTGA	3 cut(s)	217, 334, 749
Hpy166II	GTNNAC	2 cut(s)	73, 115
Hpy188I	TCNGA	5 cut(s)	87, 201, 462, 618, 659
Hpy188III	TCNNGA	5 cut(s)	224, 710, 791, 831, 974
Hpy8I	GTNNAC	2 cut(s)	73, 115
Hpy99I	CGWCG	2 cut(s)	103, 109
HpyAV	CCTTC	2 cut(s)	19, 736
HpyCH4III	ACNGT	4 cut(s)	338, 490, 646, 672
HpyCH4IV	ACGT	3 cut(s)	509, 539, 585
HpyCH4V	TGCA	6 cut(s)	157, 385, 547, 609, 725, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 190, 760
HpyF3I	CTNAG	6 cut(s)	168, 265, 470, 524, 590, 764
HpySE526I	ACGT	3 cut(s)	509, 539, 585
Hsp92II	CATG	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	562, 706, 771
LmnI	GCTCC	3 cut(s)	28, 100, 990
Lsp1109I	GCAGC	3 cut(s)	21, 307, 531
LweI	GCATC	4 cut(s)	180, 204, 663, 741
MaeI	CTAG	3 cut(s)	326, 806, 1002
MaeII	ACGT	3 cut(s)	509, 539, 585
MaeIII	GTNAC	2 cut(s)	163, 862
MalI	GATC	3 cut(s)	564, 708, 773
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	3 cut(s)	562, 706, 771
MboII	GAAGA	7 cut(s)	45, 241, 392, 431, 630, 941, 1041
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	97, 530
MluCI	AATT	7 cut(s)	391, 411, 422, 612, 661, 909, 977
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	12, 86, 140, 195, 225, 282, 343, 584, 739
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	394
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	763
MspI	CCGG	2 cut(s)	110, 224
MunI	CAATTG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	181, 190, 760
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	3 cut(s)	562, 706, 771
NlaIII	CATG	1 cut(s)	923
NlaIV	GGNNCC	2 cut(s)	789, 845
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	196, 633
PkrI	GCNGC	4 cut(s)	33, 36, 322, 546
PspN4I	GGNNCC	2 cut(s)	789, 845
PspPI	GGNCC	5 cut(s)	241, 365, 571, 788, 843
PstNI	CAGNNNCTG	2 cut(s)	368, 797
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	3 cut(s)	335, 588, 1017
RsaNI	GTAC	3 cut(s)	334, 587, 1016
RseI	CAYNNNNRTG	1 cut(s)	687
SatI	GCNGC	4 cut(s)	32, 35, 321, 545
Sau3AI	GATC	3 cut(s)	562, 706, 771
Sau96I	GGNCC	5 cut(s)	241, 365, 571, 788, 843
ScaI	AGTACT	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	97, 530
SfaNI	GCATC	4 cut(s)	180, 204, 663, 741
SfcI	CTRYAG	1 cut(s)	949
SinI	GGWCC	2 cut(s)	241, 788
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	7 cut(s)	391, 411, 422, 612, 661, 909, 977
SsiI	CCGC	2 cut(s)	31, 761
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	326, 806, 1002
StyI	CCWWGG	2 cut(s)	325, 600
TaaI	ACNGT	4 cut(s)	338, 490, 646, 672
TaiI	ACGT	3 cut(s)	512, 542, 588
TaqI	TCGA	1 cut(s)	973
TasI	AATT	7 cut(s)	391, 411, 422, 612, 661, 909, 977
TatI	WGTACW	2 cut(s)	333, 1015
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	196, 633
TscAI	CASTG	6 cut(s)	97, 159, 495, 528, 879, 944
TseI	GCWGC	3 cut(s)	34, 320, 544
TspDTI	ATGAA	4 cut(s)	17, 241, 390, 524
TspGWI	ACGGA	3 cut(s)	39, 87, 272
TspRI	CASTG	6 cut(s)	97, 159, 495, 528, 879, 944
VpaK11BI	GGWCC	2 cut(s)	241, 788
XapI	RAATTY	3 cut(s)	612, 661, 977
XmaJI	CCTAGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	3 cut(s)	326, 806, 1002
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.