Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

69697932 .. 69702962

Gene Structure 5031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATTATTGCATGGTAAGGGAAATATTTCCCACTTCCTCTTCAGGAACTAATAATATTTTTGTTCAATTGTCTCCCTGTGTGGCTCTAGTCTCATGTTGTCTCAACTCCTTTGTCTTAGATGTCACTGAAATTCTTTCTGATCTTGAGCTTTCGATTCAAAGGGTGAAAGTGACAACAACACCAGATGACAGGGTCTTGGACCTGTTCTTCATAACAGATAACATGGATCTTCTGCACACAAAGGAGCGGCAAGATAAGACATTGAAACAGTTGCAAGCCGTATTGGGTGAGTCGTGTACCAGTTGCGAACTTCAGTTGGTAGGTCCCGAGTATGATCCCCACCATGGCATTCCTTCTCTGTCTCCTGTAGTAGCTGAAGAGCTATTTAGGTGTGAGCTGTTGGATAAAGAAATCCGTTCTCAAGCTCTTAGTCCTGATATGACGAAATTGAAGAACGCTAATGTAACAATAGACAACTCATTGAGCCCAGCACATACATTACTTCAGATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAACTTTGAAAGACAGCAACATCAAGATAGCTTATGGTCGGTTTTCTCCAACTACAAAAGGGTATCGGGATTTAGACCTTTTTATTCAGCAAAAGGATGGGAAAAAGATTCAGGATCCGGAGGTGCAGAGTGCATTGTGTTTGAGTTTGAAGGTGGAGATGCTTCACCCACTGCGTGTTATCATTGCAAACCGAGGGCCTGATACAGAATTGTTGGTTGCTAATCCAGTTGAACTATCTGGAAAGGGGCGACCACTAGTTTTCTATGATGTTACTTTGGCTCTAAAAGCACTGAGGATCTGCATTTTCTCGGCTGAAATTGGAAGGATCTCAGCATCAGGTCGTGAATGGGAGGTGTATAGTTTTCTGTTGGAGGAGAATTCCAAATTTCAATTATCAAATATGGTTGCTAAGAATCAGATTGTAGATAGAGTTAGAAGAACACTGATGGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

336

Amino Acids

37.82

Weight (kDa)

5.72

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT_ACR9_3rd	PF24931	155 - 252	7.6e-48	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	253 - 335	4.1e-38	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	7 cut(s)	237, 332, 505, 662, 675, 857, 887
AcsI	RAATTY	3 cut(s)	132, 931, 938
AcuI	CTGAAG	4 cut(s)	27, 299, 399, 491
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	8 cut(s)	68, 161, 268, 454, 562, 703, 785, 944
AhlI	ACTAGT	1 cut(s)	808
AluBI	AGCT	6 cut(s)	151, 377, 385, 400, 428, 584
AluI	AGCT	6 cut(s)	151, 377, 385, 400, 428, 584
Alw26I	GTCTC	5 cut(s)	78, 97, 107, 369, 539
AlwI	GGATC	7 cut(s)	237, 332, 505, 662, 675, 857, 887
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	749
ApoI	RAATTY	3 cut(s)	132, 931, 938
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	202, 326, 749
AsuHPI	GGTGA	3 cut(s)	178, 302, 710
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	202, 326
BamHI	GGATCC	1 cut(s)	667
BanII	GRGCYC	1 cut(s)	491
BccI	CCATC	3 cut(s)	644, 994, 999
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	78, 97, 107, 369, 539
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	89, 809
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	202, 326
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	202, 326, 749
BmiI	GGNNCC	2 cut(s)	328, 669
BmsI	GCATC	2 cut(s)	702, 896
BpuEI	CTTGAG	2 cut(s)	167, 408
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	346, 745
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	303, 779
Bse3DI	GCAATG	1 cut(s)	735
BseAI	TCCGGA	1 cut(s)	670
BseDI	CCNNGG	2 cut(s)	346, 745
BseGI	GGATG	2 cut(s)	655, 1010
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	836, 897
BseNI	ACTGG	2 cut(s)	303, 779
BseRI	GAGGAG	1 cut(s)	941
BseYI	CCCAGC	1 cut(s)	490
BsgI	GTGCAG	2 cut(s)	221, 698
BshFI	GGCC	1 cut(s)	751
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	5 cut(s)	78, 97, 107, 369, 539
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	751
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	2 cut(s)	837, 896
BspEI	TCCGGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	328, 669
BspPI	GGATC	7 cut(s)	237, 332, 505, 662, 675, 857, 887
BspQI	GCTCTTC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	303, 779
BssECI	CCNNGG	2 cut(s)	346, 745
BssMI	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	273, 518
Bst6I	CTCTTC	2 cut(s)	46, 375
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	118, 431, 845, 883, 963
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	2 cut(s)	655, 1010
BstKTI	GATC	8 cut(s)	145, 232, 340, 513, 526, 670, 852, 882
BstMAI	GTCTC	5 cut(s)	78, 97, 107, 369, 539
BstMBI	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
BstMWI	GCNNNNNNNGC	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	369
BstX2I	RGATCY	5 cut(s)	229, 510, 667, 849, 879
BstYI	RGATCY	5 cut(s)	229, 510, 667, 849, 879
BsuRI	GGCC	1 cut(s)	751
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	655, 1010
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	5 cut(s)	126, 514, 722, 842, 995
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	202, 326, 749
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	4 cut(s)	13, 96, 226, 347
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	5 cut(s)	118, 431, 845, 883, 963
DpnI	GATC	8 cut(s)	144, 231, 339, 512, 525, 669, 851, 881
DpnII	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
DraIII	CACNNNGTG	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	46, 375
EarI	CTCTTC	2 cut(s)	46, 375
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	202, 326
Eco57I	CTGAAG	4 cut(s)	27, 299, 399, 491
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	326, 749
EcoRI	GAATTC	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	4 cut(s)	16, 99, 229, 350
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	4 cut(s)	12, 95, 225, 346
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	2 cut(s)	89, 809
GluI	GCNGC	1 cut(s)	251
GsaI	CCCAGC	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	1 cut(s)	671
Hin1II	CATG	4 cut(s)	16, 99, 229, 350
HinfI	GANTC	4 cut(s)	157, 293, 661, 967
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	3 cut(s)	178, 302, 710
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	3 cut(s)	142, 510, 972
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	3 cut(s)	366, 697, 870
HpyCH4III	ACNGT	2 cut(s)	273, 518
HpyCH4V	TGCA	7 cut(s)	12, 238, 277, 679, 686, 740, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	839
HpyF3I	CTNAG	5 cut(s)	118, 431, 845, 883, 963
Hsp92II	CATG	4 cut(s)	16, 99, 229, 350
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	247
LweI	GCATC	2 cut(s)	702, 896
MaeI	CTAG	2 cut(s)	89, 809
MaeIII	GTNAC	4 cut(s)	124, 172, 466, 823
MalI	GATC	8 cut(s)	144, 231, 339, 512, 525, 669, 851, 881
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
MboII	GAAGA	6 cut(s)	33, 202, 224, 392, 466, 1002
MfeI	CAATTG	1 cut(s)	68
MflI	RGATCY	5 cut(s)	229, 510, 667, 849, 879
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	8 cut(s)	68, 132, 449, 761, 870, 931, 938, 944
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	384, 626, 903
MnlI	CCTC	6 cut(s)	49, 667, 740, 840, 898, 919
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	27
MspI	CCGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	839
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
NlaIII	CATG	4 cut(s)	16, 99, 229, 350
NlaIV	GGNNCC	2 cut(s)	328, 669
NmeAIII	GCCGAG	1 cut(s)	842
NmuCI	GTSAC	2 cut(s)	124, 172
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	157, 661, 967
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	328, 669
PspPI	GGNCC	3 cut(s)	202, 326, 749
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	5 cut(s)	229, 510, 667, 849, 879
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	8 cut(s)	142, 229, 337, 510, 523, 667, 849, 879
Sau96I	GGNCC	3 cut(s)	202, 326, 749
SchI	GAGTC	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	2 cut(s)	702, 896
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	202, 326
SmlI	CTYRAG	2 cut(s)	146, 423
SmoI	CTYRAG	2 cut(s)	146, 423
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	8 cut(s)	68, 132, 449, 761, 870, 931, 938, 944
SsiI	CCGC	1 cut(s)	250
SspI	AATATT	2 cut(s)	27, 58
SspMI	CTAG	2 cut(s)	89, 809
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	273, 518
TaqI	TCGA	1 cut(s)	155
TasI	AATT	8 cut(s)	68, 132, 449, 761, 870, 931, 938, 944
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	3 cut(s)	157, 661, 967
TscAI	CASTG	5 cut(s)	133, 521, 729, 849, 1002
TseFI	GTSAC	2 cut(s)	124, 172
Tsp45I	GTSAC	2 cut(s)	124, 172
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	5 cut(s)	133, 521, 729, 849, 1002
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	202, 326
XapI	RAATTY	3 cut(s)	132, 931, 938
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	89, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.