Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Forward (+)

5512389 .. 5515896

Gene Structure 3508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G081400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGAGTGCTGAGCGACGACGTCGTTGTGATCCAGAAAGGTAACCGGCCTGGCGAGCCCTGCGTCATCACCGTTAATTGCCCGGACAAGACCGGCCTCGGCTGCGATATTTGCAGAATAATCCTCGATTTTGGCCTTTACATTGAGAAAGCTGATTTTTCAACTGATGGGATATGGTGCTACTTAGTGTTATGGGTATTTCCTCATTCAAGCTCACCAATTGTGAGATTGTCAAATTTGAAGAACCAGCTCCAATCTGTATGCCCATCATGCACAATGTCCTATTACTTCTTCCAGCAGACCACACGACCGTCATCCTCAGCAGTTTATCTATTGACGTTTGTTTGCCTTGACCGCAAGGGGTTGTTGCATGATGTTACACAAATTCTCTCTGAGCTTGAGCTTTCAATTCAAAGTGTGAAAGTGACCACAACCCCAGATGACAGGGTCTTGGACCTCTTCTTTATAACAGATAACATGGACCTTCTACACACGAAAGAACGCCAAGATGAGACATTAAAACAATTGCATGATGTATTGGGTGAGTCATGTATCAGCTGCGAACTTCAGTTGGCAGATCCTGTGTATGAATCCCACCGTGGCATCCCTTCCCTTTCTCCTGTGGTAGCTGAAGAGCTATTTACATGTGAGTTATTGGATAAAGAAACCCTCTCTCAAGCTCTCAGTCCAGATATGACAAAATTGAAGGAAAGCAATGTGACAATGGACAATTCATTGAGCCCAGCTCATACATTACTTCAAATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAACCTTGAAAGACTGCAATATCAAGATATCTTACGGTAGATTTTCTCCAAATGTAAAAGGCTATCGTGATTTAGACCTTTTCATCCAGCAGAAGGATGGGAAAAAGTTTGTGGATCCTGATAAGCAGAGTGCACTGTGTTTGTGTTTGAAGGTGGAGATGCTTCACCCCTTACGTGTTATCATTGCAGACCGAGGGCCAGATACTGAACTGTTGGTTGCTAATCCAGTGGAGCTATCTGGAAAGGGTCGACCACGAGTTTTCTACGATGTTACATTGGCTTTAAAAACACTCGGGATTTGCATTTTCTCGGCTGAAATTGGAAGGGTCTCAGCATCAGATCGTGAATGGGAGGTTTATAGGTTTTTGCTGGAAGAGAACCACAAATTTCAATTATCAAATATGGTAGCTAAGAATCAGATTGTAGATAGAGTTAGAAGAACATTGATGGGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

421

Amino Acids

47.48

Weight (kDa)

5.54

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AatII	GACGTC	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	1054
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	4 cut(s)	25, 572, 914, 927
AcsI	RAATTY	3 cut(s)	235, 384, 1190
AcuI	CTGAAG	2 cut(s)	551, 651
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	898
AflIII	ACRYGT	2 cut(s)	644, 979
AjnI	CCWGG	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	940
Alw26I	GTCTC	3 cut(s)	506, 791, 1138
Alw44I	GTGCAC	1 cut(s)	936
AlwI	GGATC	4 cut(s)	25, 572, 914, 927
AlwNI	CAGNNNCTG	2 cut(s)	581, 1010
Ama87I	CYCGRG	1 cut(s)	1097
AoxI	GGCC	4 cut(s)	47, 94, 133, 1001
ApaLI	GTGCAC	1 cut(s)	936
ApeKI	GCWGC	2 cut(s)	102, 558
ApoI	RAATTY	3 cut(s)	235, 384, 1190
AspS9I	GGNCC	3 cut(s)	454, 481, 1001
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	61, 207, 554, 962
AvaI	CYCGRG	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	454, 481
BaeGI	GKGCMC	1 cut(s)	940
BamHI	GGATCC	1 cut(s)	919
BanII	GRGCYC	2 cut(s)	60, 743
BauI	CACGAG	1 cut(s)	1059
Bbv12I	GWGCWC	1 cut(s)	940
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	89, 545
BccI	CCATC	4 cut(s)	161, 274, 896, 1246
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	506, 791, 1138
BisI	GCNGC	2 cut(s)	103, 559
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	2 cut(s)	104, 560
Bme1390I	CCNGG	2 cut(s)	51, 83
Bme18I	GGWCC	2 cut(s)	454, 481
BmeT110I	CYCGRG	1 cut(s)	1097
BmgT120I	GGNCC	3 cut(s)	454, 481, 1001
BmiI	GGNNCC	1 cut(s)	921
BmrFI	CCNGG	2 cut(s)	51, 83
BmsI	GCATC	3 cut(s)	612, 954, 1148
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
Bpu10I	CCTNAGC	1 cut(s)	319
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	419, 660
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	980
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	791, 1138
BsaJI	CCNNGG	3 cut(s)	97, 598, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	898
Bse118I	RCCGGY	2 cut(s)	45, 92
Bse1I	ACTGG	1 cut(s)	1031
Bse3DI	GCAATG	2 cut(s)	721, 987
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	97, 598, 997
BseGI	GGATG	4 cut(s)	314, 603, 888, 907
BseLI	CCNNNNNNNGG	1 cut(s)	898
BseMI	GCAATG	2 cut(s)	721, 987
BseMII	CTCAG	4 cut(s)	333, 384, 697, 1149
BseNI	ACTGG	1 cut(s)	1031
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	2 cut(s)	89, 545
BseYI	CCCAGC	1 cut(s)	742
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	4 cut(s)	49, 96, 135, 1003
BsiEI	CGRYCG	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	940
BsiHKCI	CYCGRG	1 cut(s)	1097
BsiSI	CCGG	3 cut(s)	46, 83, 93
BslI	CCNNNNNNNGG	1 cut(s)	898
BsmAI	GTCTC	3 cut(s)	506, 791, 1138
BsnI	GGCC	4 cut(s)	49, 96, 135, 1003
Bso31I	GGTCTC	2 cut(s)	791, 1138
BsoBI	CYCGRG	1 cut(s)	1097
Bsp1286I	GDGCHC	3 cut(s)	60, 743, 940
Bsp143I	GATC	5 cut(s)	30, 577, 775, 919, 1144
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	4 cut(s)	49, 96, 135, 1003
BspCNI	CTCAG	4 cut(s)	332, 385, 696, 1148
BspLI	GGNNCC	1 cut(s)	921
BspPI	GGATC	4 cut(s)	25, 572, 914, 927
BspQI	GCTCTTC	1 cut(s)	627
BspTNI	GGTCTC	2 cut(s)	791, 1138
BsrDI	GCAATG	2 cut(s)	721, 987
BsrFI	RCCGGY	2 cut(s)	45, 92
BsrI	ACTGG	1 cut(s)	1031
BssAI	RCCGGY	2 cut(s)	45, 92
BssECI	CCNNGG	3 cut(s)	97, 598, 997
BssMI	GATC	5 cut(s)	30, 577, 775, 919, 1144
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	1059
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	7 cut(s)	73, 312, 599, 770, 842, 942, 1017
Bst6I	CTCTTC	3 cut(s)	464, 627, 1173
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	7 cut(s)	11, 184, 319, 393, 683, 1135, 1215
BstDSI	CCRYGG	1 cut(s)	598
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	4 cut(s)	314, 603, 888, 907
BstKTI	GATC	5 cut(s)	33, 580, 778, 922, 1147
BstMAI	GTCTC	3 cut(s)	506, 791, 1138
BstMBI	GATC	5 cut(s)	30, 577, 775, 919, 1144
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 60, 102, 111, 270, 354
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	648
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	49, 81
BstSLI	GKGCMC	1 cut(s)	940
BstV1I	GCAGC	2 cut(s)	89, 545
BstX2I	RGATCY	2 cut(s)	577, 919
BstYI	RGATCY	2 cut(s)	577, 919
BsuRI	GGCC	4 cut(s)	49, 96, 135, 1003
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	4 cut(s)	314, 603, 888, 907
BtsIMutI	CAGTG	3 cut(s)	766, 938, 1038
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	2 cut(s)	581, 1010
Cfr10I	RCCGGY	2 cut(s)	45, 92
Cfr13I	GGNCC	3 cut(s)	454, 481, 1001
CseI	GACGC	1 cut(s)	52
CviAII	CATG	6 cut(s)	270, 371, 478, 530, 549, 645
DdeI	CTNAG	7 cut(s)	11, 184, 319, 393, 683, 1135, 1215
DpnI	GATC	5 cut(s)	32, 579, 777, 921, 1146
DpnII	GATC	5 cut(s)	30, 577, 775, 919, 1144
DraI	TTTAAA	1 cut(s)	1089
Eam1104I	CTCTTC	3 cut(s)	464, 627, 1173
EarI	CTCTTC	3 cut(s)	464, 627, 1173
Eco24I	GRGCYC	2 cut(s)	60, 743
Eco31I	GGTCTC	2 cut(s)	791, 1138
Eco32I	GATATC	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	454, 481
Eco57I	CTGAAG	2 cut(s)	551, 651
Eco88I	CYCGRG	1 cut(s)	1097
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	834
EcoT38I	GRGCYC	2 cut(s)	60, 743
FaeI	CATG	6 cut(s)	273, 374, 481, 533, 552, 648
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FatI	CATG	6 cut(s)	269, 370, 477, 529, 548, 644
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	1054
Fnu4HI	GCNGC	2 cut(s)	103, 559
FokI	GGATG	4 cut(s)	301, 590, 875, 914
FriOI	GRGCYC	2 cut(s)	60, 743
Fsp4HI	GCNGC	2 cut(s)	103, 559
GluI	GCNGC	2 cut(s)	103, 559
GsaI	CCCAGC	1 cut(s)	746
HaeIII	GGCC	4 cut(s)	49, 96, 135, 1003
HapII	CCGG	3 cut(s)	46, 83, 93
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	273, 374, 481, 533, 552, 648
HincII	GTYRAC	1 cut(s)	1055
HindII	GTYRAC	1 cut(s)	1055
HinfI	GANTC	3 cut(s)	545, 590, 1219
HpaII	CCGG	3 cut(s)	46, 83, 93
HphI	GGTGA	4 cut(s)	61, 207, 554, 962
Hpy166II	GTNNAC	2 cut(s)	938, 1055
Hpy188I	TCNGA	3 cut(s)	394, 1144, 1224
Hpy188III	TCNNGA	8 cut(s)	34, 689, 829, 872, 923, 1044, 1099, 1148
Hpy8I	GTNNAC	2 cut(s)	938, 1055
Hpy99I	CGWCG	3 cut(s)	20, 23, 26
HpyAV	CCTTC	6 cut(s)	494, 618, 700, 892, 949, 1122
HpyCH4III	ACNGT	7 cut(s)	73, 312, 599, 770, 842, 942, 1017
HpyCH4IV	ACGT	3 cut(s)	21, 338, 979
HpyCH4V	TGCA	8 cut(s)	114, 273, 370, 529, 822, 938, 992, 1107
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 60, 102, 111, 270, 354
HpyF3I	CTNAG	7 cut(s)	11, 184, 319, 393, 683, 1135, 1215
HpySE526I	ACGT	3 cut(s)	21, 338, 979
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	273, 374, 481, 533, 552, 648
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	30, 577, 775, 919, 1144
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	255, 1036
Lsp1109I	GCAGC	2 cut(s)	89, 545
LweI	GCATC	3 cut(s)	612, 954, 1148
MaeII	ACGT	3 cut(s)	21, 338, 979
MaeIII	GTNAC	5 cut(s)	41, 376, 424, 718, 1075
MalI	GATC	5 cut(s)	32, 579, 777, 921, 1146
MboI	GATC	5 cut(s)	30, 577, 775, 919, 1144
MboII	GAAGA	6 cut(s)	253, 283, 451, 644, 1190, 1254
MfeI	CAATTG	2 cut(s)	219, 524
MflI	RGATCY	2 cut(s)	577, 919
MhlI	GDGCHC	3 cut(s)	60, 743, 940
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	8 cut(s)	107, 134, 213, 328, 467, 680, 992, 1150
MseI	TTAA	3 cut(s)	75, 518, 1088
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	3 cut(s)	46, 83, 93
MspR9I	CCNGG	2 cut(s)	51, 83
MunI	CAATTG	2 cut(s)	219, 524
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	6 cut(s)	55, 60, 102, 111, 270, 354
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	5 cut(s)	30, 577, 775, 919, 1144
NlaIII	CATG	6 cut(s)	273, 374, 481, 533, 552, 648
NlaIV	GGNNCC	1 cut(s)	921
NmeAIII	GCCGAG	2 cut(s)	78, 1094
NmuCI	GTSAC	2 cut(s)	424, 718
NspI	RCATGY	1 cut(s)	648
PciI	ACATGT	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	590, 1219
PflFI	GACNNNGTC	2 cut(s)	20, 446
PkrI	GCNGC	2 cut(s)	104, 560
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	921
PspPI	GGNCC	3 cut(s)	454, 481, 1001
PstNI	CAGNNNCTG	2 cut(s)	581, 1010
PsuI	RGATCY	2 cut(s)	577, 919
PsyI	GACNNNGTC	2 cut(s)	20, 446
PvuII	CAGCTG	1 cut(s)	558
SalI	GTCGAC	1 cut(s)	1053
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	75, 518, 1088
SatI	GCNGC	2 cut(s)	103, 559
Sau3AI	GATC	5 cut(s)	30, 577, 775, 919, 1144
Sau96I	GGNCC	3 cut(s)	454, 481, 1001
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	51, 83
SduI	GDGCHC	3 cut(s)	60, 743, 940
SfaNI	GCATC	3 cut(s)	612, 954, 1148
SinI	GGWCC	2 cut(s)	454, 481
SmlI	CTYRAG	2 cut(s)	398, 675
SmoI	CTYRAG	2 cut(s)	398, 675
SsiI	CCGC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	49, 81
TaaI	ACNGT	7 cut(s)	73, 312, 599, 770, 842, 942, 1017
TaiI	ACGT	3 cut(s)	24, 341, 982
TaqI	TCGA	2 cut(s)	126, 1054
TaqII	GACCGA	1 cut(s)	1011
TfiI	GAWTC	2 cut(s)	590, 1219
Tru1I	TTAA	3 cut(s)	75, 518, 1088
Tru9I	TTAA	3 cut(s)	75, 518, 1088
TscAI	CASTG	3 cut(s)	773, 945, 1038
TseFI	GTSAC	2 cut(s)	424, 718
TseI	GCWGC	2 cut(s)	102, 558
Tsp45I	GTSAC	2 cut(s)	424, 718
TspDTI	ATGAA	3 cut(s)	603, 723, 877
TspRI	CASTG	3 cut(s)	773, 945, 1038
Tth111I	GACNNNGTC	2 cut(s)	20, 446
VneI	GTGCAC	1 cut(s)	936
VpaK11BI	GGWCC	2 cut(s)	454, 481
XapI	RAATTY	3 cut(s)	235, 384, 1190
XceI	RCATGY	1 cut(s)	648
XcmI	CCANNNNNNNNNTGG	1 cut(s)	899
XmiI	GTMKAC	1 cut(s)	1054
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.