Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

15082053 .. 15085222

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGCATTCCCTGCGACGACATCGTCGTTATCAAGCCGGGGAAGGCTCCTGACGAGCCCTCCGTCCTCACCGTCAACTGTCCCGACAAGGCCGGCCTCGGCTGCGACCTCTGCCGAATCATCCTCCAGTTCGGCCTCTCCATTACCAAAGGAGATTTCTCGACGGATGGAAGGTGGTGCTATATAGTGCTGTGGGTCGTCCCCCACCACGAATCCCTGAAGGTCGATTGGGAGAGGTTGAAGGATCGGCTCTCGTCCGCGTGCCCGTCGTCGCGCTTCTTCTCATTTTATCTCAATCAAATCTCCAACGTCCCAACGCCCTCTCCGGTCTATCTGTTGAAGTTGTGGTGCCACGACCAGAGAGGCTCACTCCACGATGTTACCAAAGTGCTCTGTGAGCTTGAAATTCTGATTCAGAGAGTGAAAGTGATGCCGACCCCGGATGGCCGAGTTTTGGACCTCTTCTTCATCACAGATTGCTTGGAGTTGTTACACACAAAACAGAGAAGAGACGACATAAGTGAGCATCTGATGGCTGCTTTAGGAGAGTATTGCATCACCTGTGAGCTTAAGTTGCCTGGACCTGAGTATGAAAGTCTGCAGGGGAATTCTTCTCTTCCACCAGCCATTGCTGACGAATTATTTAGCTATCAGCTGAAGGATGAGGAGGCTTATCCAAAAGCTCTCACCCAGAATATGGGAACGGTGAACAAGACCAGTATTACAGTGGATAATTCATTGAGCCCTGTTCATACGGTGCTGCAAATACAGTGTGTTGATCGGAATGGCCTCTTTTATGACATTATGAGGACTTCCAAGGACTGCAATATTCAGATTGCCTATGGTAGATTCTCGTCACCTGTGAAAGGCTTCCGAAATTTGGACCTATTTATTCAGCAGACAAATGGAAAAAAGCTTGTTGATCCTGAAGTTCAGGTTGCATTGTGTAATCATTTAAAGAAGGAGATGGTTCACCCACTGCGAGTGATCGTTGCCAATAGGGGCCCAGAAACCGAACTCTTAGTTGCTAATCCAGTTGAGTTATCTGGAAAGGGGAGGCCCCTTGTATTCTACAATGTTACTCTGGCACTGAAACAATTGGGAGTATCTATTTTTGCGGCTGAAATTGTAAGGAATTCAACTTCAGTTTGCCAGTGGGAAATCTACCGATTCCTTTTGGATGATAGCTGTGAATTTCCATTGGTGATTATTTCGGCCGCTTTGGTGGTTATGTGCAGCTGCATATATAGAAATGCCACCTCTTGTGCTACCTTGCTTTCGGGCCGTTTGAATTGTGTGAAACTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

437

Amino Acids

48.82

Weight (kDa)

6.17

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccII	CGCG	2 cut(s)	260, 274
AciI	CCGC	3 cut(s)	258, 1118, 1218
AclWI	GGATC	2 cut(s)	252, 917
AcoI	YGGCCR	2 cut(s)	445, 1215
AcsI	RAATTY	5 cut(s)	405, 607, 877, 1135, 1193
AcuI	CTGAAG	4 cut(s)	239, 677, 948, 1128
AfiI	CCNNNNNNNGG	4 cut(s)	454, 697, 866, 880
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	5 cut(s)	241, 340, 404, 1140, 1291
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	8 cut(s)	400, 568, 648, 655, 683, 916, 1188, 1239
AluI	AGCT	8 cut(s)	400, 568, 648, 655, 683, 916, 1188, 1239
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	252, 917
AoxI	GGCC	9 cut(s)	90, 94, 133, 445, 787, 1003, 1058, 1215, 1282
ApaI	GGGCCC	1 cut(s)	1007
ApeKI	GCWGC	5 cut(s)	102, 536, 760, 1236, 1239
ApoI	RAATTY	5 cut(s)	405, 607, 877, 1135, 1193
Asp700I	GAANNNNTTC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	7 cut(s)	457, 581, 883, 1003, 1004, 1059, 1282
AsuC2I	CCSGG	2 cut(s)	39, 440
AsuHPI	GGTGA	7 cut(s)	61, 550, 679, 718, 849, 965, 1216
AvaII	GGWCC	3 cut(s)	457, 581, 883
BaeGI	GKGCMC	2 cut(s)	266, 1007
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	3 cut(s)	60, 746, 1007
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	89, 523, 747, 1226, 1248
BccI	CCATC	4 cut(s)	161, 437, 526, 961
BceAI	ACGGC	1 cut(s)	1269
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	39, 440
BcoDI	GTCTC	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	599
BfrI	CTTAAG	1 cut(s)	569
BisI	GCNGC	7 cut(s)	103, 537, 761, 1119, 1218, 1237, 1240
BlsI	GCNGC	7 cut(s)	104, 538, 762, 1120, 1219, 1238, 1241
Bme1390I	CCNGG	3 cut(s)	39, 440, 579
Bme18I	GGWCC	3 cut(s)	457, 581, 883
BmgT120I	GGNCC	7 cut(s)	457, 581, 883, 1003, 1004, 1059, 1282
BmiI	GGNNCC	5 cut(s)	48, 350, 1004, 1005, 1061
BmrFI	CCNGG	3 cut(s)	39, 440, 579
BmsI	GCATC	3 cut(s)	420, 535, 564
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	39, 440
BsaJI	CCNNGG	4 cut(s)	38, 97, 438, 816
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 307, 337
Bsc4I	CCNNNNNNNGG	4 cut(s)	454, 697, 866, 880
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	127, 717, 1034, 1153
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	4 cut(s)	38, 97, 438, 816
BseGI	GGATG	5 cut(s)	120, 172, 448, 667, 1186
BseLI	CCNNNNNNNGG	4 cut(s)	454, 697, 866, 880
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	4 cut(s)	127, 717, 1034, 1153
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	266, 1007
BseX3I	CGGCCG	1 cut(s)	1215
BseXI	GCAGC	5 cut(s)	89, 523, 747, 1226, 1248
BsgI	GTGCAG	1 cut(s)	1255
Bsh1236I	CGCG	2 cut(s)	260, 274
Bsh1285I	CGRYCG	1 cut(s)	1218
BshFI	GGCC	9 cut(s)	92, 96, 135, 447, 789, 1005, 1060, 1217, 1284
BshNI	GGYRCC	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	1218
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	4 cut(s)	38, 93, 326, 440
BslFI	GGGAC	3 cut(s)	66, 185, 296
BslI	CCNNNNNNNGG	4 cut(s)	454, 697, 866, 880
BsmAI	GTCTC	1 cut(s)	504
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	3 cut(s)	66, 185, 296
BsmI	GAATGC	1 cut(s)	6
BsnI	GGCC	9 cut(s)	92, 96, 135, 447, 789, 1005, 1060, 1217, 1284
Bsp120I	GGGCCC	1 cut(s)	1003
Bsp1286I	GDGCHC	5 cut(s)	60, 266, 393, 746, 1007
Bsp143I	GATC	4 cut(s)	244, 778, 922, 987
BspACI	CCGC	3 cut(s)	258, 1118, 1218
BspANI	GGCC	9 cut(s)	92, 96, 135, 447, 789, 1005, 1060, 1217, 1284
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	2 cut(s)	260, 274
BspLI	GGNNCC	5 cut(s)	48, 350, 1004, 1005, 1061
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	2 cut(s)	252, 917
BspT107I	GGYRCC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	127, 717, 1034, 1153
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	38, 97, 438, 816
BssMI	GATC	4 cut(s)	244, 778, 922, 987
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	6 cut(s)	73, 80, 706, 727, 757, 771
Bst6I	CTCTTC	3 cut(s)	467, 502, 621
BstAFI	CTTAAG	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	94, 262
BstDEI	CTNAG	2 cut(s)	585, 1021
BstENI	CCTNNNNNAGG	1 cut(s)	864
BstF5I	GGATG	5 cut(s)	120, 172, 448, 667, 1186
BstFNI	CGCG	2 cut(s)	260, 274
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	4 cut(s)	247, 781, 925, 990
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	244, 778, 922, 987
BstMCI	CGRYCG	1 cut(s)	1218
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 102, 111, 397, 574
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	3 cut(s)	37, 438, 577
BstSFI	CTRYAG	1 cut(s)	599
BstSLI	GKGCMC	2 cut(s)	266, 1007
BstUI	CGCG	2 cut(s)	260, 274
BstV1I	GCAGC	5 cut(s)	89, 523, 747, 1226, 1248
BstZI	CGGCCG	1 cut(s)	1215
BsuRI	GGCC	9 cut(s)	92, 96, 135, 447, 789, 1005, 1060, 1217, 1284
BtsCI	GGATG	5 cut(s)	120, 172, 448, 667, 1186
BtsI	GCAGTG	1 cut(s)	977
BtsIMutI	CAGTG	5 cut(s)	732, 776, 977, 1088, 1160
Cac8I	GCNNGC	2 cut(s)	94, 262
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	7 cut(s)	457, 581, 883, 1003, 1004, 1059, 1282
DdeI	CTNAG	2 cut(s)	585, 1021
DpnI	GATC	4 cut(s)	246, 780, 924, 989
DpnII	GATC	4 cut(s)	244, 778, 922, 987
DraI	TTTAAA	1 cut(s)	957
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	445, 1215
EagI	CGGCCG	1 cut(s)	1215
Eam1104I	CTCTTC	3 cut(s)	467, 502, 621
EarI	CTCTTC	3 cut(s)	467, 502, 621
EclXI	CGGCCG	1 cut(s)	1215
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	3 cut(s)	60, 746, 1007
Eco47I	GGWCC	3 cut(s)	457, 581, 883
Eco52I	CGGCCG	1 cut(s)	1215
Eco57I	CTGAAG	4 cut(s)	239, 677, 948, 1128
EcoNI	CCTNNNNNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	2 cut(s)	1003, 1059
EcoRI	GAATTC	2 cut(s)	607, 1135
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	3 cut(s)	60, 746, 1007
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	504
FaqI	GGGAC	3 cut(s)	66, 185, 296
Fnu4HI	GCNGC	7 cut(s)	103, 537, 761, 1119, 1218, 1237, 1240
FokI	GGATG	5 cut(s)	107, 179, 455, 674, 1193
FriOI	GRGCYC	3 cut(s)	60, 746, 1007
FseI	GGCCGGCC	1 cut(s)	96
Fsp4HI	GCNGC	7 cut(s)	103, 537, 761, 1119, 1218, 1237, 1240
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	7 cut(s)	103, 537, 761, 1119, 1218, 1237, 1240
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	9 cut(s)	92, 96, 135, 447, 789, 1005, 1060, 1217, 1284
HapII	CCGG	4 cut(s)	38, 93, 326, 440
HhaI	GCGC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	5 cut(s)	117, 212, 412, 849, 1170
HpaII	CCGG	4 cut(s)	38, 93, 326, 440
HphI	GGTGA	7 cut(s)	61, 550, 679, 718, 849, 965, 1216
Hpy166II	GTNNAC	3 cut(s)	76, 709, 973
Hpy188I	TCNGA	6 cut(s)	411, 417, 531, 783, 834, 875
Hpy188III	TCNNGA	5 cut(s)	50, 83, 160, 926, 1047
Hpy8I	GTNNAC	3 cut(s)	76, 709, 973
Hpy99I	CGWCG	5 cut(s)	20, 29, 166, 271, 274
HpyAV	CCTTC	6 cut(s)	37, 165, 214, 235, 652, 955
HpyCH4III	ACNGT	6 cut(s)	73, 80, 706, 727, 757, 771
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	7 cut(s)	555, 601, 763, 825, 941, 1236, 1242
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 102, 111, 397, 574
HpyF3I	CTNAG	2 cut(s)	585, 1021
HpySE526I	ACGT	1 cut(s)	309
HspAI	GCGC	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	244, 778, 922, 987
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	5 cut(s)	89, 523, 747, 1226, 1248
LweI	GCATC	3 cut(s)	420, 535, 564
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	4 cut(s)	379, 489, 855, 1078
MalI	GATC	4 cut(s)	246, 780, 924, 989
MboI	GATC	4 cut(s)	244, 778, 922, 987
MboII	GAAGA	6 cut(s)	271, 454, 457, 519, 603, 608
MfeI	CAATTG	1 cut(s)	1097
MhlI	GDGCHC	5 cut(s)	60, 266, 393, 746, 1007
MmeI	TCCRAC	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	2 cut(s)	570, 956
MspA1I	CMGCKG	2 cut(s)	655, 1239
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	4 cut(s)	38, 93, 326, 440
MspR9I	CCNGG	3 cut(s)	39, 440, 579
MunI	CAATTG	1 cut(s)	1097
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	2 cut(s)	260, 274
MwoI	GCNNNNNNNGC	5 cut(s)	12, 102, 111, 397, 574
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	2 cut(s)	39, 440
NdeII	GATC	4 cut(s)	244, 778, 922, 987
NgoMIV	GCCGGC	1 cut(s)	92
NlaIV	GGNNCC	5 cut(s)	48, 350, 1004, 1005, 1061
NmeAIII	GCCGAG	2 cut(s)	78, 473
NmuCI	GTSAC	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 60
PctI	GAATGC	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	869
PfeI	GAWTC	5 cut(s)	117, 212, 412, 849, 1170
PflFI	GACNNNGTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	7 cut(s)	104, 538, 762, 1120, 1219, 1238, 1241
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	5 cut(s)	48, 350, 1004, 1005, 1061
PspOMI	GGGCCC	1 cut(s)	1003
PspPI	GGNCC	7 cut(s)	457, 581, 883, 1003, 1004, 1059, 1282
PstI	CTGCAG	1 cut(s)	603
PsyI	GACNNNGTC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	655, 1239
RigI	GGCCGGCC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	570, 956
SatI	GCNGC	7 cut(s)	103, 537, 761, 1119, 1218, 1237, 1240
Sau3AI	GATC	4 cut(s)	244, 778, 922, 987
Sau96I	GGNCC	7 cut(s)	457, 581, 883, 1003, 1004, 1059, 1282
ScrFI	CCNGG	3 cut(s)	39, 440, 579
SduI	GDGCHC	5 cut(s)	60, 266, 393, 746, 1007
SfaNI	GCATC	3 cut(s)	420, 535, 564
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	3 cut(s)	457, 581, 883
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SsiI	CCGC	3 cut(s)	258, 1118, 1218
SspI	AATATT	1 cut(s)	829
StyD4I	CCNGG	3 cut(s)	37, 438, 577
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	6 cut(s)	73, 80, 706, 727, 757, 771
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	161, 225
TauI	GCSGC	2 cut(s)	1121, 1220
TfiI	GAWTC	5 cut(s)	117, 212, 412, 849, 1170
Tru1I	TTAA	2 cut(s)	570, 956
Tru9I	TTAA	2 cut(s)	570, 956
TscAI	CASTG	5 cut(s)	732, 776, 984, 1095, 1160
TseFI	GTSAC	1 cut(s)	855
TseI	GCWGC	5 cut(s)	102, 536, 760, 1236, 1239
Tsp45I	GTSAC	1 cut(s)	855
TspDTI	ATGAA	4 cut(s)	457, 606, 726, 740
TspGWI	ACGGA	2 cut(s)	52, 179
TspRI	CASTG	5 cut(s)	732, 776, 984, 1095, 1160
Tth111I	GACNNNGTC	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	697
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	3 cut(s)	457, 581, 883
XagI	CCTNNNNNAGG	1 cut(s)	864
XapI	RAATTY	5 cut(s)	405, 607, 877, 1135, 1193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.