Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Reverse (-)

71934347 .. 71939410

Gene Structure 5064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG417300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAATCCCGAGCGACGACGTCGTTGTATTCCAGAAAGCTAAACGCCCGGGCGAGGCTTCCGTCATCACCGTTAATTGCCCGGATAAGACCGGTCTGGGATGCGATATTTGCAGGATCATCCTCGATTTTGGGCTCTGCATCAGAAAAGCTGATTTTTCAACTGATGGGATATGGTGCTACGTTGTATTATGGGTGGTTCCTCATTCTAACTCAACAACAGTGAAATGGTCGAATTTGGAGAACCAGCTCCTATCCGTGTGCCCGTCATGTTCTGTTCCGTATTACTTCTACCCCCAGACTACATGTTCCTCGCCGCCTGCAGTTTATCTATTGAAGTTTCTTTGCTCTGACCGTAATGGATTATTGCATGATGTCACTGAAATTCTGTCTGATCTTGAGCTTTCGATTCAAAGGGTGAAAGTGACAACAACACCAGATGACAGGGTCTTGGACCTGTTCTTCATAACAGATAACATGGATCTTCTGCACACAAAGGAGCGGCAAGATAAGACATTGAAACAGTTGCAAGCCGTATTGGGTGAGTCGTGTACCAGTTGCGAACTTCAGTTGGTAGGTCCCGAGTATGATCCCCACCATGGTATTCCTTCTCTGTCTCCTGTAGTAGCTGAAGAGCTATTTAGGTGTGAGCTGTTGGATAAAGAAATCCGTTCTCAAGCTCTTAGTCCTGATATGACGAAATTGAAGAACGCTAATGTAACAATAGACAACTCATTGAGCCCAGCACATACATTACTTCAGATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAACTTTGAAAGACAGCAACATCAAGGTAAAGATTCTTATATCATCTTTTTTCCAGACAACATCAGATCATATTTTAGTAACTAGGCTATTTTATTTTGTTAGTTTGGTCAGCACATGCCTGTCCTGGAATGGTAAAATCGCCGGCCACCTAATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

321

Amino Acids

35.97

Weight (kDa)

5.92

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	12 - 89	4.8e-40	ACT domain-containing protein ACR10, N-terminal
ACT	PF01842	111 - 171	2.9e-09	ACT domain
ACT_ACR9_3rd	PF24931	239 - 279	4.2e-19	ACR9-like, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	502
AciI	CCGC	2 cut(s)	317, 502
AclWI	GGATC	4 cut(s)	125, 489, 584, 757
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	235, 384
AcuI	CTGAAG	3 cut(s)	551, 651, 743
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	2 cut(s)	55, 599
AflIII	ACRYGT	1 cut(s)	305
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	6 cut(s)	162, 337, 413, 520, 706, 814
AjnI	CCWGG	1 cut(s)	929
AluBI	AGCT	8 cut(s)	41, 152, 250, 403, 629, 637, 652, 680
AluI	AGCT	8 cut(s)	41, 152, 250, 403, 629, 637, 652, 680
Alw26I	GTCTC	2 cut(s)	621, 791
AlwI	GGATC	4 cut(s)	125, 489, 584, 757
Ama87I	CYCGRG	3 cut(s)	10, 49, 581
AoxI	GGCC	1 cut(s)	949
ApoI	RAATTY	2 cut(s)	235, 384
AsiGI	ACCGGT	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	454, 578
AsuC2I	CCSGG	3 cut(s)	50, 51, 83
AsuHPI	GGTGA	3 cut(s)	61, 430, 554
AvaI	CYCGRG	3 cut(s)	10, 49, 581
AvaII	GGWCC	2 cut(s)	454, 578
BaeGI	GKGCMC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	138, 743
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	931
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	3 cut(s)	50, 51, 83
BcoDI	GTCTC	2 cut(s)	621, 791
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	2 cut(s)	321, 621
BisI	GCNGC	2 cut(s)	317, 503
BlsI	GCNGC	2 cut(s)	318, 504
Bme1390I	CCNGG	4 cut(s)	50, 51, 83, 931
Bme18I	GGWCC	2 cut(s)	454, 578
BmeT110I	CYCGRG	3 cut(s)	10, 49, 581
BmgT120I	GGNCC	2 cut(s)	454, 578
BmiI	GGNNCC	2 cut(s)	201, 580
BmrFI	CCNGG	4 cut(s)	50, 51, 83, 931
BmsI	GCATC	2 cut(s)	92, 150
BpuEI	CTTGAG	2 cut(s)	419, 660
BpuMI	CCSGG	3 cut(s)	50, 51, 83
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	49, 598
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 599
Bse118I	RCCGGY	2 cut(s)	92, 947
Bse1I	ACTGG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	931
BseDI	CCNNGG	2 cut(s)	49, 598
BseGI	GGATG	2 cut(s)	107, 120
BseLI	CCNNNNNNNGG	2 cut(s)	55, 599
BseNI	ACTGG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	742
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	951
BshTI	ACCGGT	1 cut(s)	92
BsiHKCI	CYCGRG	3 cut(s)	10, 49, 581
BsiSI	CCGG	4 cut(s)	50, 83, 93, 948
BslFI	GGGAC	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	55, 599
BsmAI	GTCTC	2 cut(s)	621, 791
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	951
Bso31I	GGTCTC	1 cut(s)	791
BsoBI	CYCGRG	3 cut(s)	10, 49, 581
Bsp1286I	GDGCHC	3 cut(s)	138, 266, 743
Bsp143I	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	2 cut(s)	317, 502
BspANI	GGCC	1 cut(s)	951
BspLI	GGNNCC	2 cut(s)	201, 580
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	4 cut(s)	125, 489, 584, 757
BspQI	GCTCTTC	1 cut(s)	627
BspTNI	GGTCTC	1 cut(s)	791
BsrBI	CCGCTC	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	92, 947
BsrI	ACTGG	1 cut(s)	555
BssAI	RCCGGY	2 cut(s)	92, 947
BssECI	CCNNGG	2 cut(s)	49, 598
BssMI	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	931
Bst4CI	ACNGT	5 cut(s)	73, 223, 356, 525, 770
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	321, 531, 949
BstDEI	CTNAG	1 cut(s)	683
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	107, 120
BstKTI	GATC	7 cut(s)	120, 397, 484, 592, 765, 778, 874
BstMAI	GTCTC	2 cut(s)	621, 791
BstMBI	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	931
BstNSI	RCATGY	2 cut(s)	309, 924
BstSCI	CCNGG	4 cut(s)	48, 49, 81, 929
BstSFI	CTRYAG	2 cut(s)	321, 621
BstSLI	GKGCMC	1 cut(s)	266
BstX2I	RGATCY	2 cut(s)	481, 762
BstYI	RGATCY	2 cut(s)	481, 762
BsuRI	GGCC	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	107, 120
BtsIMutI	CAGTG	3 cut(s)	228, 378, 766
Cac8I	GCNNGC	3 cut(s)	321, 531, 949
Cfr10I	RCCGGY	2 cut(s)	92, 947
Cfr13I	GGNCC	2 cut(s)	454, 578
Cfr9I	CCCGGG	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	552
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	6 cut(s)	270, 306, 371, 478, 599, 921
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	7 cut(s)	119, 396, 483, 591, 764, 777, 873
DpnII	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	138, 743
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	454, 578
Eco57I	CTGAAG	3 cut(s)	551, 651, 743
Eco88I	CYCGRG	3 cut(s)	10, 49, 581
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	929
EcoT14I	CCWWGG	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	138, 743
ErhI	CCWWGG	1 cut(s)	598
FaeI	CATG	6 cut(s)	273, 309, 374, 481, 602, 924
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	6 cut(s)	269, 305, 370, 477, 598, 920
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	2 cut(s)	317, 503
FokI	GGATG	2 cut(s)	107, 114
FriOI	GRGCYC	2 cut(s)	138, 743
Fsp4HI	GCNGC	2 cut(s)	317, 503
FspBI	CTAG	1 cut(s)	888
GluI	GCNGC	2 cut(s)	317, 503
GsaI	CCCAGC	1 cut(s)	746
HaeIII	GGCC	1 cut(s)	951
HapII	CCGG	4 cut(s)	50, 83, 93, 948
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	273, 309, 374, 481, 602, 924
HinfI	GANTC	4 cut(s)	6, 409, 545, 838
HpaII	CCGG	4 cut(s)	50, 83, 93, 948
HphI	GGTGA	3 cut(s)	61, 430, 554
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	5 cut(s)	146, 352, 394, 762, 871
Hpy188III	TCNNGA	6 cut(s)	10, 34, 398, 581, 689, 859
Hpy8I	GTNNAC	1 cut(s)	552
Hpy99I	CGWCG	3 cut(s)	20, 23, 26
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	5 cut(s)	73, 223, 356, 525, 770
HpyCH4IV	ACGT	2 cut(s)	21, 183
HpyCH4V	TGCA	6 cut(s)	114, 141, 323, 370, 490, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	2 cut(s)	21, 183
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	273, 309, 374, 481, 602, 924
KroI	GCCGGC	1 cut(s)	947
KroNI	GCCGGC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	255, 499
LweI	GCATC	2 cut(s)	92, 150
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	2 cut(s)	21, 183
MaeIII	GTNAC	4 cut(s)	376, 424, 718, 883
MalI	GATC	7 cut(s)	119, 396, 483, 591, 764, 777, 873
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
MboII	GAAGA	4 cut(s)	454, 476, 644, 718
MflI	RGATCY	2 cut(s)	481, 762
MhlI	GDGCHC	3 cut(s)	138, 266, 743
MluCI	AATT	4 cut(s)	76, 235, 384, 701
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	4 cut(s)	49, 134, 213, 322
MroNI	GCCGGC	1 cut(s)	947
MseI	TTAA	1 cut(s)	75
MspI	CCGG	4 cut(s)	50, 83, 93, 948
MspR9I	CCNGG	4 cut(s)	50, 51, 83, 931
MvaI	CCWGG	1 cut(s)	931
MwoI	GCNNNNNNNGC	1 cut(s)	111
NaeI	GCCGGC	1 cut(s)	949
NciI	CCSGG	3 cut(s)	50, 51, 83
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
NgoMIV	GCCGGC	1 cut(s)	947
NlaIII	CATG	6 cut(s)	273, 309, 374, 481, 602, 924
NlaIV	GGNNCC	2 cut(s)	201, 580
NmuCI	GTSAC	2 cut(s)	376, 424
NspI	RCATGY	2 cut(s)	309, 924
PciI	ACATGT	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	627
PdiI	GCCGGC	1 cut(s)	949
PfeI	GAWTC	3 cut(s)	6, 409, 838
PflFI	GACNNNGTC	2 cut(s)	20, 446
PfoI	TCCNGGA	1 cut(s)	929
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	318, 504
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	578
PscI	ACATGT	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	929
PspN4I	GGNNCC	2 cut(s)	201, 580
PspPI	GGNCC	2 cut(s)	454, 578
PspPPI	RGGWCCY	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	481, 762
PsyI	GACNNNGTC	2 cut(s)	20, 446
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	317, 503
Sau3AI	GATC	7 cut(s)	117, 394, 481, 589, 762, 775, 871
Sau96I	GGNCC	2 cut(s)	454, 578
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	50, 51, 83, 931
SduI	GDGCHC	3 cut(s)	138, 266, 743
SfaNI	GCATC	2 cut(s)	92, 150
SfcI	CTRYAG	2 cut(s)	321, 621
SinI	GGWCC	2 cut(s)	454, 578
SmaI	CCCGGG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	398, 675
SmoI	CTYRAG	2 cut(s)	398, 675
SrfI	GCCCGGGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	76, 235, 384, 701
SsiI	CCGC	2 cut(s)	317, 502
SspMI	CTAG	1 cut(s)	888
StyD4I	CCNGG	4 cut(s)	48, 49, 81, 929
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	5 cut(s)	73, 223, 356, 525, 770
TaiI	ACGT	2 cut(s)	24, 186
TaqI	TCGA	3 cut(s)	126, 233, 407
TasI	AATT	4 cut(s)	76, 235, 384, 701
TauI	GCSGC	2 cut(s)	319, 505
TfiI	GAWTC	3 cut(s)	6, 409, 838
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	3 cut(s)	228, 385, 773
TseFI	GTSAC	2 cut(s)	376, 424
Tsp45I	GTSAC	2 cut(s)	376, 424
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	4 cut(s)	52, 247, 270, 659
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	3 cut(s)	228, 385, 773
Tth111I	GACNNNGTC	2 cut(s)	20, 446
VpaK11BI	GGWCC	2 cut(s)	454, 578
XapI	RAATTY	2 cut(s)	235, 384
XceI	RCATGY	2 cut(s)	309, 924
XmaI	CCCGGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	888
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.