RLG00000035659

ACT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003332
Physical Location & Seq
Reverse (-)
69933232 .. 69936046
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035659

Sequence Viewer

Length: 1122 bp
ATGGTAGCAGACTCTCAAACTCTCGCTCAACGTCAAATCAAGTGCCCCGCCTTAGCCTTTAGTGCCCTCTGCCCTCCTCTCCTCTCCTCTCCTCTCATTCATCATTTCCTCTCTCTCACCTTGCAATTCACCGCAGACTTGCATTTTGATTGGAATATGGGAATCCCGAGCGACGACGTCGTTGTATTCCAGAAAGCTAAACGCCCGGGCGAGGCTTCAGTCATCACCGTTAATTGCCCGGACAAGACCGGTCTGGGATGCGATATTTGCAGGATCATCCTCGATTTTGGGCTCTGCATTAGAAAAGCTGATTTTTCAACTGATGGGATATGGTGCTACGTTGTATTATGGGTGGTTCCGCATTCTACCTCAACAACGGTGAAATGGTCGAATTTGGAGAACCAGCTCCTATCCGTGTGCCCGTCATGTTCTGTTCCATATTACTTCTACCCCCAGACTACATGTTCTTCGCCCCCTGCAGTTTATCTACTGAAGTTTGTTTGCTCTGACCGTCATGGATTATTGCATGATGTCACTGAAATTCTGTCTGATCTTGAGCTTTCGATTCAAAGGGTGAAAGTGACAACAACACCAGATGACAGGGTCTTGGACCTGTTCTTCATAACAGATAACATGGATCTTCTGCACACAAAGGAGCGGCAAGATAAGACATTGAATCAGTTGCGAGCCGTATTGGGTGAGTCGTGTACCAGTTGTGAACTTCAGTTGGTAGGTCCTGAGTATGATCCCCACCATGGCATTCCTTCTCTGTCTCCTGTAGTAGCTGAAGAGCTATTTAGGTGTGAGCTGTTGGATAAAGAAATCCGTTCTCAAGCTCTTAGTCCTGATATGACGAAATTGAAGAACGCTAATGTAACAATAGACAACTCATTGAGCCCAGCACATACATTACTTCAGATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAACTTTGAAAGACAGCAACATCAAGGTAAAGATTCTTATATCATCTTTTTTCCAGACAACATCAGATCATATTTTAGTAACTAGGCTATTTTATTGTGTTAGTTTGGTCAGCACGTGCCTGTCCTGGAATGGTAAAATTGCCAGCCACCTAATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ACT

Protein Analysis

374

Amino Acids

41.75

Weight (kDa)

6.04

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACR10_N PF24914 64 - 141 7.2e-40 ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd PF24931 159 - 232 1e-05 ACR9-like, ACT-like domain
ACT PF01842 163 - 223 2e-09 ACT domain
ACT_ACR9_3rd PF24931 291 - 331 5.5e-19 ACR9-like, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccBSI CCGCTC 1 cut(s) 658
AciI CCGC 4 cut(s) 48, 132, 359, 658
AclWI GGATC 4 cut(s) 281, 645, 740, 913
AcsI RAATTY 2 cut(s) 391, 540
AcuI CTGAAG 5 cut(s) 201, 512, 707, 807, 899
AcvI CACGTG 1 cut(s) 1077
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 211, 755
AflIII ACRYGT 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 5 cut(s) 318, 569, 676, 862, 970
AjnI CCWGG 1 cut(s) 1085
AluBI AGCT 8 cut(s) 197, 308, 406, 559, 785, 793, 808, 836
AluI AGCT 8 cut(s) 197, 308, 406, 559, 785, 793, 808, 836
Alw26I GTCTC 2 cut(s) 777, 947
AlwI GGATC 4 cut(s) 281, 645, 740, 913
Ama87I CYCGRG 2 cut(s) 166, 205
ApoI RAATTY 2 cut(s) 391, 540
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AsiGI ACCGGT 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 610, 734
AsuC2I CCSGG 3 cut(s) 206, 207, 239
AsuHPI GGTGA 6 cut(s) 109, 121, 217, 391, 586, 710
AvaI CYCGRG 2 cut(s) 166, 205
AvaII GGWCC 2 cut(s) 610, 734
BaeGI GKGCMC 3 cut(s) 47, 67, 422
BanII GRGCYC 2 cut(s) 294, 899
BbrPI CACGTG 1 cut(s) 1077
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 1 cut(s) 1087
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 3 cut(s) 206, 207, 239
BcoDI GTCTC 2 cut(s) 777, 947
BfaI CTAG 1 cut(s) 1044
BfmI CTRYAG 2 cut(s) 477, 777
BisI GCNGC 1 cut(s) 659
BlsI GCNGC 1 cut(s) 660
Bme1390I CCNGG 4 cut(s) 206, 207, 239, 1087
Bme18I GGWCC 2 cut(s) 610, 734
BmeT110I CYCGRG 2 cut(s) 166, 205
BmgT120I GGNCC 2 cut(s) 610, 734
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 4 cut(s) 206, 207, 239, 1087
BmsI GCATC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 52
BpuEI CTTGAG 2 cut(s) 575, 816
BpuMI CCSGG 3 cut(s) 206, 207, 239
BsaAI YACGTR 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 205, 754
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 755
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 711
BseBI CCWGG 1 cut(s) 1087
BseDI CCNNGG 2 cut(s) 205, 754
BseGI GGATG 2 cut(s) 263, 276
BseLI CCNNNNNNNGG 2 cut(s) 211, 755
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 711
BseRI GAGGAG 4 cut(s) 66, 71, 76, 81
BseSI GKGCMC 3 cut(s) 47, 67, 422
BseYI CCCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 629
BshTI ACCGGT 1 cut(s) 248
BsiHKCI CYCGRG 2 cut(s) 166, 205
BsiSI CCGG 3 cut(s) 206, 239, 249
BslI CCNNNNNNNGG 2 cut(s) 211, 755
BsmAI GTCTC 2 cut(s) 777, 947
BsmI GAATGC 2 cut(s) 361, 759
Bso31I GGTCTC 1 cut(s) 947
BsoBI CYCGRG 2 cut(s) 166, 205
Bsp1286I GDGCHC 5 cut(s) 47, 67, 294, 422, 899
Bsp143I GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
Bsp19I CCATGG 1 cut(s) 754
BspACI CCGC 4 cut(s) 48, 132, 359, 658
BspCNI CTCAG 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 4 cut(s) 281, 645, 740, 913
BspQI GCTCTTC 1 cut(s) 783
BspTNI GGTCTC 1 cut(s) 947
BsrBI CCGCTC 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 711
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 205, 754
BssMI GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 754
Bst2UI CCWGG 1 cut(s) 1087
Bst4CI ACNGT 4 cut(s) 229, 379, 512, 926
Bst6I CTCTTC 1 cut(s) 783
BstACI GRCGYC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 1077
BstC8I GCNNGC 2 cut(s) 687, 1105
BstDEI CTNAG 3 cut(s) 52, 738, 839
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 2 cut(s) 263, 276
BstKTI GATC 7 cut(s) 276, 553, 640, 748, 921, 934, 1030
BstMAI GTCTC 2 cut(s) 777, 947
BstMBI GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 62, 267
BstNI CCWGG 1 cut(s) 1087
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 4 cut(s) 204, 205, 237, 1085
BstSFI CTRYAG 2 cut(s) 477, 777
BstSLI GKGCMC 3 cut(s) 47, 67, 422
BstX2I RGATCY 2 cut(s) 637, 918
BstYI RGATCY 2 cut(s) 637, 918
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 2 cut(s) 263, 276
BtsIMutI CAGTG 2 cut(s) 534, 922
Cac8I GCNNGC 2 cut(s) 687, 1105
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 610, 734
Cfr9I CCCGGG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 708
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 6 cut(s) 426, 462, 515, 527, 634, 755
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 3 cut(s) 52, 738, 839
DpnI GATC 7 cut(s) 275, 552, 639, 747, 920, 933, 1029
DpnII GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Eco130I CCWWGG 1 cut(s) 754
Eco24I GRGCYC 2 cut(s) 294, 899
Eco31I GGTCTC 1 cut(s) 947
Eco47I GGWCC 2 cut(s) 610, 734
Eco57I CTGAAG 5 cut(s) 201, 512, 707, 807, 899
Eco72I CACGTG 1 cut(s) 1077
Eco88I CYCGRG 2 cut(s) 166, 205
EcoO109I RGGNCCY 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 1085
EcoT14I CCWWGG 1 cut(s) 754
EcoT38I GRGCYC 2 cut(s) 294, 899
ErhI CCWWGG 1 cut(s) 754
FaeI CATG 6 cut(s) 429, 465, 518, 530, 637, 758
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FatI CATG 6 cut(s) 425, 461, 514, 526, 633, 754
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 1 cut(s) 659
FokI GGATG 2 cut(s) 263, 270
FriOI GRGCYC 2 cut(s) 294, 899
Fsp4HI GCNGC 1 cut(s) 659
FspBI CTAG 1 cut(s) 1044
GluI GCNGC 1 cut(s) 659
GsaI CCCAGC 1 cut(s) 902
HapII CCGG 3 cut(s) 206, 239, 249
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 429, 465, 518, 530, 637, 758
HinfI GANTC 6 cut(s) 11, 162, 565, 676, 701, 994
HpaII CCGG 3 cut(s) 206, 239, 249
HphI GGTGA 6 cut(s) 109, 121, 217, 391, 586, 710
Hpy166II GTNNAC 2 cut(s) 708, 719
Hpy188I TCNGA 4 cut(s) 508, 550, 918, 1027
Hpy188III TCNNGA 6 cut(s) 166, 190, 554, 737, 845, 1015
Hpy8I GTNNAC 2 cut(s) 708, 719
Hpy99I CGWCG 3 cut(s) 176, 179, 182
HpyAV CCTTC 1 cut(s) 774
HpyCH4III ACNGT 4 cut(s) 229, 379, 512, 926
HpyCH4IV ACGT 4 cut(s) 31, 177, 339, 1076
HpyCH4V TGCA 7 cut(s) 124, 142, 270, 297, 479, 526, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 267
HpyF3I CTNAG 3 cut(s) 52, 738, 839
HpySE526I ACGT 4 cut(s) 31, 177, 339, 1076
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 429, 465, 518, 530, 637, 758
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 2 cut(s) 411, 655
LweI GCATC 1 cut(s) 248
MaeI CTAG 1 cut(s) 1044
MaeII ACGT 4 cut(s) 31, 177, 339, 1076
MaeIII GTNAC 4 cut(s) 532, 580, 874, 1039
MalI GATC 7 cut(s) 275, 552, 639, 747, 920, 933, 1029
MbiI CCGCTC 1 cut(s) 658
MboI GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
MboII GAAGA 5 cut(s) 459, 610, 632, 800, 874
MflI RGATCY 2 cut(s) 637, 918
MhlI GDGCHC 5 cut(s) 47, 67, 294, 422, 899
MluCI AATT 6 cut(s) 125, 232, 391, 540, 857, 1098
MlyI GAGTC 2 cut(s) 5, 710
MmeI TCCRAC 1 cut(s) 792
MseI TTAA 1 cut(s) 231
MspI CCGG 3 cut(s) 206, 239, 249
MspR9I CCNGG 4 cut(s) 206, 207, 239, 1087
Mva1269I GAATGC 2 cut(s) 361, 759
MvaI CCWGG 1 cut(s) 1087
MwoI GCNNNNNNNGC 2 cut(s) 62, 267
NciI CCSGG 3 cut(s) 206, 207, 239
NcoI CCATGG 1 cut(s) 754
NdeII GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
NlaIII CATG 6 cut(s) 429, 465, 518, 530, 637, 758
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 532, 580
NspI RCATGY 1 cut(s) 465
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 783
PctI GAATGC 2 cut(s) 361, 759
PfeI GAWTC 4 cut(s) 162, 565, 676, 994
PflFI GACNNNGTC 2 cut(s) 176, 602
PfoI TCCNGGA 1 cut(s) 1085
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 660
PleI GAGTC 2 cut(s) 5, 709
PmaCI CACGTG 1 cut(s) 1077
PmlI CACGTG 1 cut(s) 1077
PpsI GAGTC 2 cut(s) 5, 709
Ppu21I YACGTR 1 cut(s) 1077
PpuMI RGGWCCY 1 cut(s) 734
PscI ACATGT 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 1085
PspCI CACGTG 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 898
PspGI CCWGG 1 cut(s) 1085
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 610, 734
PspPPI RGGWCCY 1 cut(s) 734
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 637, 918
PsyI GACNNNGTC 2 cut(s) 176, 602
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 659
Sau3AI GATC 7 cut(s) 273, 550, 637, 745, 918, 931, 1027
Sau96I GGNCC 2 cut(s) 610, 734
SchI GAGTC 2 cut(s) 5, 710
ScrFI CCNGG 4 cut(s) 206, 207, 239, 1087
SduI GDGCHC 5 cut(s) 47, 67, 294, 422, 899
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 2 cut(s) 477, 777
SinI GGWCC 2 cut(s) 610, 734
SmaI CCCGGG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 554, 831
SmoI CTYRAG 2 cut(s) 554, 831
SrfI GCCCGGGC 1 cut(s) 207
Sse9I AATT 6 cut(s) 125, 232, 391, 540, 857, 1098
SsiI CCGC 4 cut(s) 48, 132, 359, 658
SspMI CTAG 1 cut(s) 1044
StyD4I CCNGG 4 cut(s) 204, 205, 237, 1085
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 4 cut(s) 229, 379, 512, 926
TaiI ACGT 4 cut(s) 34, 180, 342, 1079
TaqI TCGA 3 cut(s) 282, 389, 563
TasI AATT 6 cut(s) 125, 232, 391, 540, 857, 1098
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 4 cut(s) 162, 565, 676, 994
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 541, 929
TseFI GTSAC 2 cut(s) 532, 580
Tsp45I GTSAC 2 cut(s) 532, 580
TspDTI ATGAA 2 cut(s) 89, 610
TspGWI ACGGA 2 cut(s) 403, 815
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 2 cut(s) 541, 929
Tth111I GACNNNGTC 2 cut(s) 176, 602
VpaK11BI GGWCC 2 cut(s) 610, 734
XapI RAATTY 2 cut(s) 391, 540
XceI RCATGY 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 205
XspI CTAG 1 cut(s) 1044
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.