Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003332

Physical Location & Seq

Genomic Coordinates Forward (+)

10834168 .. 10836581

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGAATTTCCTGCGACGACGTCGTTATAGTCCAGCAGGGGAAGAATCCCGGCGAGCCGACCGTCGTGACGATCAATTGTCCCGACAAGCCTGGCCTCGGCTGCGACCTCTGCAGAACCGTGCTTCAATTCGGGCTTTGCATTACTAAAGGAGATTTCACGACGGACAAGAAGTGGTGCTACATAGTGCTGTGGGTGGTGGCGAATCAGAGCTCAATGAAGGTGGATTGGGAGAGGTTGAAGGAGCGGCTGCTCTCTGCTTGTCCGTCTTCGTGTTTCTATAAGGTTTACCTCAATATTCAGTCCAGTGCTCCGTCGCCGTCGCCGGTTTACCTCTTGAAATTTTGGTGCTTTGACCAGAGAGGCTCACTGCATGATGTTACTAAGGTGCTGTGTGAGCTTGAGATGCTGATTCAGAGAGTGAAAGTGATGCCAACTCCAGATGGGAGGGTTTTGGACCTGTTCTTCATCACGGATTGCTTAGATTTGCTACACACGAAAAAGAGGAGAGATGACATATGTGAGCATCTGATGGCTGCCCTAGGAGAGTACTGTATCACCTGTGAGGTTCAGTTGGCAGGGCCTGAATATGAAAGTTTGCAGGGAAATTATTCTCTTCCATCAGCAATTGCCGAAGAATTATTTAGCTGTCGGCTAACAGATGACAAAGCTTGTCCGAAAGCTCTCAGCCCAAGTTTGGCAACAGTGAAAAACACAAGTATTACGTTGGATAATACACTGAGCCCTGTTCATACGTTGCTGCAAATTCAATGTGTGGATCAAAAGGGCCTCTTTTATGACGTACTAAGGACTTCCAAGGATTGCAAAATTCAGATTGCCTATGCTAGATTCTCTTCTACTGTCAAAGGCATCCGAAATTTGGAACTGTTTATTCAGCACACAGATGGGAAAAAGATTGTAGATCCTGAAAGACAGGTTGCATTGTGTTCTCGGTTGAAGGAGGAGATGCTTCACCCGCTGAGAGTGATAATTGCCAACAAGGGTCCAGATACTGAACTCCTAGTTGCTAATCCAGTTGAGTTATCTGGAAAAGGACGGCCCCTCGTCTTTTATGATGTTACTCTTGCACTGAAAAAGTTGGGAATATCTATTTTCTTGGCTGAAATTGTAAGGCATGAGACTGAAGATTGCCAGTGGGAAGTCTATAGATTTCTTTTGGATGATAGTCGAGAATTTCCTTTGGGGAGCAGAGAAGCTAGAAATAAGATTGTACAAAGAGTTAGAAGAACATTGATGGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT

Protein Analysis

422

Amino Acids

47.62

Weight (kDa)

6.99

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACR10_N	PF24914	12 - 89	1.2e-39	ACT domain-containing protein ACR10, N-terminal
ACT_ACR9_3rd	PF24931	240 - 337	7.2e-46	ACR9-like, ACT-like domain
ACT_ACR9_C	PF24926	338 - 420	6.6e-38	ACT domain-containing protein ACR9, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39570
fragaria_vesca	FvH4_3g35480 FvH4_3g35480 FvH4_7g22000 FvH4_7g22000
malus_domestica	MD01G1124500.v1.1 MD07G1194400.v1.1 MD11G1143600.v1.1
prunus_persica	Prupe.2G231900_v2.0.a1 Prupe.6G081400_v2.0.a1
pyrus_communis	pycom01g15090 pycom07g18330 pycom11g09320
rosa_chinensis	RchiOBHm_Chr1g0366351 RchiOBHm_Chr5g0063651
rosa_laevigata	RLG00000027350 RLG00000035659
rosa_multiflora	Rmu_sc0005638.1_g000008 Rmu_ssc0000250.1_g000013
rosa_roxburghii	Rroxscaffold_1G00017160 Rroxscaffold_4G00289960 Rroxscaffold_4G00290240
rosa_rugosa	Rorug01G0329100 Rorug01G0329200 Rorug05G0358700
rosa_samantha	Rh1AG337400 Rh1BG298800 Rh1CG314100 Rh1DG330300 Rh5AG417300 Rh5AG542500 Rh5BG432900 Rh5CG456100 Rh5DG446300
rosa_wichuraiana	Rw1G029900 Rw5G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	2 cut(s)	247, 977
AclWI	GGATC	2 cut(s)	786, 917
AcsI	RAATTY	6 cut(s)	6, 341, 765, 828, 877, 1193
AcuI	CTGAAG	1 cut(s)	1164
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	551, 804, 1233
AfiI	CCNNNNNNNGG	3 cut(s)	98, 697, 880
AgsI	TTSAA	5 cut(s)	128, 241, 340, 770, 958
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	6 cut(s)	213, 400, 648, 671, 683, 1217
AluI	AGCT	6 cut(s)	213, 400, 648, 671, 683, 1217
Alw21I	GWGCWC	2 cut(s)	215, 313
Alw26I	GTCTC	1 cut(s)	1133
AlwI	GGATC	2 cut(s)	786, 917
AlwNI	CAGNNNCTG	2 cut(s)	584, 1013
AoxI	GGCC	4 cut(s)	94, 581, 787, 1058
ApeKI	GCWGC	4 cut(s)	102, 250, 536, 760
ApoI	RAATTY	6 cut(s)	6, 341, 765, 828, 877, 1193
Asp700I	GAANNNNTTC	1 cut(s)	610
AspA2I	CCTAGG	1 cut(s)	541
AspS9I	GGNCC	5 cut(s)	457, 581, 787, 1004, 1059
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	550, 965
AvaII	GGWCC	2 cut(s)	457, 1004
AvrII	CCTAGG	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	215, 746
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	2 cut(s)	215, 313
BbvI	GCAGC	4 cut(s)	89, 237, 523, 747
BccI	CCATC	6 cut(s)	437, 526, 628, 899, 1249, 1254
BceAI	ACGGC	2 cut(s)	304, 1073
BciT130I	CCWGG	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	1133
BfaI	CTAG	4 cut(s)	542, 846, 1022, 1218
BfmI	CTRYAG	2 cut(s)	112, 1165
BisI	GCNGC	5 cut(s)	103, 248, 251, 537, 761
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	5 cut(s)	104, 249, 252, 538, 762
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	51, 93
Bme18I	GGWCC	2 cut(s)	457, 1004
BmgT120I	GGNCC	5 cut(s)	457, 581, 787, 1004, 1059
BmiI	GGNNCC	2 cut(s)	1005, 1061
BmrFI	CCNGG	2 cut(s)	51, 93
BmsI	GCATC	5 cut(s)	396, 420, 535, 879, 957
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	97, 541, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 697, 880
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	3 cut(s)	306, 1034, 1153
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	97, 541, 816
BseGI	GGATG	3 cut(s)	870, 1186, 1265
BseLI	CCNNNNNNNGG	3 cut(s)	98, 697, 880
BseMII	CTCAG	3 cut(s)	700, 731, 971
BseNI	ACTGG	3 cut(s)	306, 1034, 1153
BseRI	GAGGAG	2 cut(s)	520, 977
BseXI	GCAGC	4 cut(s)	89, 237, 523, 747
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	4 cut(s)	96, 583, 789, 1060
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	2 cut(s)	215, 313
BsiSI	CCGG	2 cut(s)	51, 326
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	98, 697, 880
BsmAI	GTCTC	1 cut(s)	1133
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	96, 583, 789, 1060
Bsp1286I	GDGCHC	3 cut(s)	215, 313, 746
Bsp1407I	TGTACA	1 cut(s)	1231
Bsp143I	GATC	3 cut(s)	72, 778, 922
BspACI	CCGC	2 cut(s)	247, 977
BspANI	GGCC	4 cut(s)	96, 583, 789, 1060
BspCNI	CTCAG	3 cut(s)	699, 732, 972
BspLI	GGNNCC	2 cut(s)	1005, 1061
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	2 cut(s)	786, 917
BsrBI	CCGCTC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	1231
BsrI	ACTGG	3 cut(s)	306, 1034, 1153
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	97, 541, 816
BssMI	GATC	3 cut(s)	72, 778, 922
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	2 cut(s)	541, 816
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	6 cut(s)	64, 121, 554, 706, 862, 888
Bst6I	CTCTTC	2 cut(s)	621, 859
BstACI	GRCGYC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	1231
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	384, 481, 686, 740, 806, 980
BstF5I	GGATG	3 cut(s)	870, 1186, 1265
BstKTI	GATC	3 cut(s)	75, 781, 925
BstMAI	GTCTC	1 cut(s)	1133
BstMBI	GATC	3 cut(s)	72, 778, 922
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 111, 397, 406, 976
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	49, 91
BstSFI	CTRYAG	2 cut(s)	112, 1165
BstV1I	GCAGC	4 cut(s)	89, 237, 523, 747
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	96, 583, 789, 1060
BtsCI	GGATG	3 cut(s)	870, 1186, 1265
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	6 cut(s)	313, 368, 711, 737, 1088, 1160
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	2 cut(s)	584, 1013
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	5 cut(s)	457, 581, 787, 1004, 1059
Csp6I	GTAC	3 cut(s)	550, 803, 1232
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	2 cut(s)	374, 1136
CviQI	GTAC	3 cut(s)	550, 803, 1232
DdeI	CTNAG	6 cut(s)	384, 481, 686, 740, 806, 980
DpnI	GATC	3 cut(s)	74, 780, 924
DpnII	GATC	3 cut(s)	72, 778, 922
Eam1104I	CTCTTC	2 cut(s)	621, 859
EarI	CTCTTC	2 cut(s)	621, 859
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	541, 816
Eco24I	GRGCYC	2 cut(s)	215, 746
Eco47I	GGWCC	2 cut(s)	457, 1004
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	1164
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	581, 787
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	541, 816
EcoT38I	GRGCYC	2 cut(s)	215, 746
ErhI	CCWWGG	2 cut(s)	541, 816
FaeI	CATG	2 cut(s)	377, 1139
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	373, 1135
FauI	CCCGC	1 cut(s)	984
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	103, 248, 251, 537, 761
FokI	GGATG	2 cut(s)	857, 1193
FriOI	GRGCYC	2 cut(s)	215, 746
Fsp4HI	GCNGC	5 cut(s)	103, 248, 251, 537, 761
FspBI	CTAG	4 cut(s)	542, 846, 1022, 1218
GluI	GCNGC	5 cut(s)	103, 248, 251, 537, 761
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	96, 583, 789, 1060
HapII	CCGG	2 cut(s)	51, 326
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	377, 1139
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	4 cut(s)	46, 205, 412, 849
HpaII	CCGG	2 cut(s)	51, 326
HphI	GGTGA	2 cut(s)	550, 965
Hpy166II	GTNNAC	2 cut(s)	289, 331
Hpy188I	TCNGA	6 cut(s)	210, 417, 531, 678, 834, 875
Hpy188III	TCNNGA	9 cut(s)	67, 83, 160, 337, 440, 926, 1007, 1047, 1190
Hpy8I	GTNNAC	2 cut(s)	289, 331
Hpy99I	CGWCG	7 cut(s)	20, 23, 26, 68, 166, 319, 325
HpyAV	CCTTC	3 cut(s)	214, 235, 952
HpyCH4III	ACNGT	6 cut(s)	64, 121, 554, 706, 862, 888
HpyCH4IV	ACGT	4 cut(s)	21, 725, 755, 801
HpyCH4V	TGCA	8 cut(s)	114, 141, 373, 601, 763, 825, 941, 1088
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 111, 397, 406, 976
HpyF3I	CTNAG	6 cut(s)	384, 481, 686, 740, 806, 980
HpySE526I	ACGT	4 cut(s)	21, 725, 755, 801
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	377, 1139
Kzo9I	GATC	3 cut(s)	72, 778, 922
LmnI	GCTCC	3 cut(s)	244, 316, 1206
Lsp1109I	GCAGC	4 cut(s)	89, 237, 523, 747
LweI	GCATC	5 cut(s)	396, 420, 535, 879, 957
MaeI	CTAG	4 cut(s)	542, 846, 1022, 1218
MaeII	ACGT	4 cut(s)	21, 725, 755, 801
MaeIII	GTNAC	3 cut(s)	67, 379, 1078
MalI	GATC	3 cut(s)	74, 780, 924
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	3 cut(s)	72, 778, 922
MboII	GAAGA	8 cut(s)	55, 261, 457, 608, 647, 846, 1157, 1257
MfeI	CAATTG	2 cut(s)	76, 627
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	3 cut(s)	215, 313, 746
MmeI	TCCRAC	1 cut(s)	708
MroXI	GAANNNNTTC	1 cut(s)	610
MslI	CAYNNNNRTG	1 cut(s)	903
MspA1I	CMGCKG	1 cut(s)	979
MspI	CCGG	2 cut(s)	51, 326
MspR9I	CCNGG	2 cut(s)	51, 93
MunI	CAATTG	2 cut(s)	76, 627
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	5 cut(s)	102, 111, 397, 406, 976
NciI	CCSGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	3 cut(s)	72, 778, 922
NlaIII	CATG	2 cut(s)	377, 1139
NlaIV	GGNNCC	2 cut(s)	1005, 1061
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	610
PfeI	GAWTC	4 cut(s)	46, 205, 412, 849
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	5 cut(s)	104, 249, 252, 538, 762
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	1005, 1061
PspPI	GGNCC	5 cut(s)	457, 581, 787, 1004, 1059
PstI	CTGCAG	1 cut(s)	116
PstNI	CAGNNNCTG	2 cut(s)	584, 1013
PsuI	RGATCY	1 cut(s)	922
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	3 cut(s)	551, 804, 1233
RsaNI	GTAC	3 cut(s)	550, 803, 1232
RseI	CAYNNNNRTG	1 cut(s)	903
SacI	GAGCTC	1 cut(s)	215
SatI	GCNGC	5 cut(s)	103, 248, 251, 537, 761
Sau3AI	GATC	3 cut(s)	72, 778, 922
Sau96I	GGNCC	5 cut(s)	457, 581, 787, 1004, 1059
ScaI	AGTACT	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	51, 93
SduI	GDGCHC	3 cut(s)	215, 313, 746
SfaNI	GCATC	5 cut(s)	396, 420, 535, 879, 957
SfcI	CTRYAG	2 cut(s)	112, 1165
SinI	GGWCC	2 cut(s)	457, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	903
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SsiI	CCGC	2 cut(s)	247, 977
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	4 cut(s)	542, 846, 1022, 1218
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	49, 91
StyI	CCWWGG	2 cut(s)	541, 816
TaaI	ACNGT	6 cut(s)	64, 121, 554, 706, 862, 888
TaiI	ACGT	4 cut(s)	24, 728, 758, 804
TaqI	TCGA	1 cut(s)	1189
TatI	WGTACW	2 cut(s)	549, 1231
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	4 cut(s)	46, 205, 412, 849
TscAI	CASTG	6 cut(s)	313, 375, 711, 744, 1095, 1160
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	102, 250, 536, 760
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	233, 457, 606, 740
TspGWI	ACGGA	4 cut(s)	179, 255, 303, 488
TspRI	CASTG	6 cut(s)	313, 375, 711, 744, 1095, 1160
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	457, 1004
XapI	RAATTY	6 cut(s)	6, 341, 765, 828, 877, 1193
XmaJI	CCTAGG	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	610
XspI	CTAG	4 cut(s)	542, 846, 1022, 1218
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.