AT2G40470

lob domain-containing protein 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003044
Physical Location & Seq
Reverse (-)
16902038 .. 16904032
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40470.2

Sequence Viewer

Length: 675 bp
ATGTCAAGAGAAAGGGAGAGATTTGAAGAGATAGGGAAGAAGATCAAAAGAGAAGCAGATGCTTGGCCTCATCAAATGGCTGGAATTAGAAGACCAATGTCGGGTCCTCCCGGAACCCTCAATACCATTACGCCTTGTGCTGCCTGCAAGCTTTTGCGCCGTAGATGTGCTCAAGAATGTCCCTTTTCGCCATATTTCTCCCCACACGAGCCTCATAAGTTCGCTTCCGTCCACAAAGTCTTTGGAGCTAGTAACGTCTCCAAGATGCTAATGGAAGTACCTGAGAGCCAGAGAGCAGATGCCGCGAATAGCCTTGTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCCATCTCAGCTCTACAACAACAAGTCCAAGCTTTACAAGCCGAGCTCACGGCCGTAAGATCCGAGATTCTTAAGTACAAGCAACGAGAAGCTGTCGCCACTTTGATCGTACCTTCCAACTCCCAAGTTGCCGGATTTCACAACTCCGGCGGTGTTTCCGTCATTGCACCACCACCACAAAGACCAACAACTCCACCACAACCTACAACGGCTCATCCTCCTTCTCCATCTTCTTGTGTTTTCTCTCAACCAACCACAAGAGACTTAGAATACGGCAACATTGAAAGTGAGAACAACTACTTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

224

Amino Acids

24.66

Weight (kDa)

8.94

Isoelectric Point (pI)

76.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 20 - 117 9.4e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 303, 516
AclWI GGATC 2 cut(s) 338, 420
AcoI YGGCCR 1 cut(s) 417
AfaI GTAC 4 cut(s) 279, 353, 443, 477
AfiI CCNNNNNNNGG 2 cut(s) 101, 353
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 26, 650
AluBI AGCT 6 cut(s) 151, 248, 377, 398, 412, 458
AluI AGCT 6 cut(s) 151, 248, 377, 398, 412, 458
Alw21I GWGCWC 2 cut(s) 172, 414
Alw26I GTCTC 2 cut(s) 262, 621
AlwI GGATC 2 cut(s) 338, 420
AoxI GGCC 2 cut(s) 65, 417
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 414
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 172, 414
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 377, 601
BceAI ACGGC 5 cut(s) 144, 404, 432, 591, 655
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 262, 621
BfaI CTAG 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 437
BisI GCNGC 2 cut(s) 141, 303
BlsI GCNGC 2 cut(s) 142, 304
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 105, 115, 367
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 4 cut(s) 49, 255, 289, 347
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 353
Bse3DI GCAATG 1 cut(s) 528
BseGI GGATG 2 cut(s) 362, 580
BseLI CCNNNNNNNGG 2 cut(s) 101, 353
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 273, 387
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 2 cut(s) 67, 419
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 172, 414
BsiSI CCGG 4 cut(s) 111, 347, 498, 513
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 101, 353
BsmAI GTCTC 2 cut(s) 262, 621
BsmBI CGTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 2 cut(s) 67, 419
Bsp1286I GDGCHC 2 cut(s) 172, 414
Bsp143I GATC 4 cut(s) 42, 343, 425, 471
BspACI CCGC 2 cut(s) 303, 516
BspANI GGCC 2 cut(s) 67, 419
BspCNI CTCAG 2 cut(s) 274, 386
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 3 cut(s) 105, 115, 367
BspPI GGATC 2 cut(s) 338, 420
BspTI CTTAAG 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 528
BssMI GATC 4 cut(s) 42, 343, 425, 471
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 145, 149
BstDEI CTNAG 4 cut(s) 282, 338, 373, 631
BstF5I GGATG 2 cut(s) 362, 580
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 45, 346, 428, 474
BstMAI GTCTC 2 cut(s) 262, 621
BstMBI GATC 4 cut(s) 42, 343, 425, 471
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 3 cut(s) 302, 374, 404
BstPAI GACNNNNGTC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 343, 425
BstYI RGATCY 2 cut(s) 343, 425
BstZI CGGCCG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 67, 419
BtsCI GGATG 2 cut(s) 362, 580
Cac8I GCNNGC 2 cut(s) 145, 149
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 4 cut(s) 278, 352, 442, 476
CviAII CATG 1 cut(s) 361
CviQI GTAC 4 cut(s) 278, 352, 442, 476
DdeI CTNAG 4 cut(s) 282, 338, 373, 631
DpnI GATC 4 cut(s) 44, 345, 427, 473
DpnII GATC 4 cut(s) 42, 343, 425, 471
EaeI YGGCCR 1 cut(s) 417
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 104
EcoT22I ATGCAT 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 1 cut(s) 364
FaiI YATR 4 cut(s) 193, 216, 321, 362
FaqI GGGAC 1 cut(s) 165
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 141, 303
FokI GGATG 2 cut(s) 369, 567
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 2 cut(s) 141, 303
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 158
GluI GCNGC 2 cut(s) 141, 303
HaeIII GGCC 2 cut(s) 67, 419
HapII CCGG 4 cut(s) 111, 347, 498, 513
HhaI GCGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 149, 396
HinfI GANTC 1 cut(s) 433
HpaII CCGG 4 cut(s) 111, 347, 498, 513
Hpy166II GTNNAC 2 cut(s) 232, 352
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 2 cut(s) 6, 173
Hpy8I GTNNAC 2 cut(s) 232, 352
HpyAV CCTTC 2 cut(s) 489, 597
HpyCH4IV ACGT 2 cut(s) 255, 330
HpyCH4V TGCA 3 cut(s) 147, 360, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 374, 404
HpyF3I CTNAG 4 cut(s) 282, 338, 373, 631
HpySE526I ACGT 2 cut(s) 255, 330
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 42, 343, 425, 471
LmnI GCTCC 2 cut(s) 245, 365
LpnPI CCDG 8 cut(s) 66, 124, 157, 294, 302, 360, 511, 526
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 4 cut(s) 49, 255, 289, 347
MaeI CTAG 1 cut(s) 249
MaeII ACGT 2 cut(s) 255, 330
MaeIII GTNAC 1 cut(s) 251
MalI GATC 4 cut(s) 44, 345, 427, 473
MboI GATC 4 cut(s) 42, 343, 425, 471
MboII GAAGA 5 cut(s) 38, 49, 52, 102, 588
MflI RGATCY 2 cut(s) 343, 425
MhlI GDGCHC 2 cut(s) 172, 414
MluCI AATT 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 6 cut(s) 78, 117, 128, 222, 327, 594
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 2 cut(s) 438, 673
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 4 cut(s) 111, 347, 498, 513
MspR9I CCNGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 302, 374, 404
NciI CCSGG 1 cut(s) 111
NdeII GATC 4 cut(s) 42, 343, 425, 471
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 3 cut(s) 105, 115, 367
NmeAIII GCCGAG 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 362
PfeI GAWTC 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 2 cut(s) 142, 304
PpuMI RGGWCCY 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 105, 115, 367
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PsuI RGATCY 2 cut(s) 343, 425
RsaI GTAC 4 cut(s) 279, 353, 443, 477
RsaNI GTAC 4 cut(s) 278, 352, 442, 476
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 438, 673
SatI GCNGC 2 cut(s) 141, 303
Sau3AI GATC 4 cut(s) 42, 343, 425, 471
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 2 cut(s) 172, 414
SfaNI GCATC 4 cut(s) 49, 255, 289, 347
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 171, 437
SmoI CTYRAG 2 cut(s) 171, 437
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 303, 516
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 109
TaiI ACGT 2 cut(s) 258, 333
TasI AATT 1 cut(s) 84
TatI WGTACW 1 cut(s) 441
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 438, 673
Tru9I TTAA 2 cut(s) 438, 673
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 3 cut(s) 217, 369, 514
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 2 cut(s) 239, 268
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.