Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003044

Physical Location & Seq

Genomic Coordinates Reverse (-)

27037614 .. 27039990

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCCAGAGAAAGGGAGATATCTGATGAGATAGGCAAGAAGATTAAGAGAGAAACTGATGCTTCTTCTCATCATCGAATGGGAAGAAGACACATGTTGGGCCCTCCAGGAACCCTAAACACCATCACCCCTTGTGCTGCCTGTAAGCTCCTCAGACGAAGGTGTGCTCAGGAATGCCCCTTTTCTCCTTACTTCTCTCCCCACGAACCCCAAAAGTTCGCCTCCGTCCACAAGGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAAGTGCCGGAGAGTCAACGAGCAGATGCTGCAAATAGTCTTGTTTATGAAGCAAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCGATTTCAGCTTTGCAACAACAGGTTCAATCTTTACAAGCTGAGCTCAATGCAGTTAGGGGTGAAATACTTAAATACAAATATAGGGAAGCGAATCTCCTTCCTTCTAATTCTCATCATATGGCTTTGTTCTCTACTTCGGGGGCTGTTTCGATTGCTTCCCTGCCGCAGACCCCACAGCCGCCTCCCCCGCCACCTCCGCCTCCACCTCTACCTCCTACCTCCTCCTCTTCTTCTATGTACACTAATCAACCAAGCACCGCGGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTTCTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

224

Amino Acids

24.44

Weight (kDa)

9.01

Isoelectric Point (pI)

70.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40470 AT2G40470
fragaria_vesca	FvH4_3g40200 FvH4_3g40200 FvH4_7g25580 FvH4_7g25580
malus_domestica	MD01G1162900.v1.1 MD03G1059400.v1.1 MD07G1231000.v1.1 MD11G1061600.v1.1
prunus_persica	Prupe.2G261000_v2.0.a1 Prupe.6G043900_v2.0.a1 Prupe.6G043900_v2.0.a1
pyrus_communis	pycom01g17770 pycom03g04770 pycom07g20870 pycom11g05110
rosa_chinensis	RchiOBHm_Chr1g0371641 RchiOBHm_Chr5g0072401
rosa_laevigata	RLG00000026949 RLG00000036297
rosa_multiflora	Rmu_sc0001755.1_g000062
rosa_roxburghii	Rroxscaffold_1G00008840 Rroxscaffold_4G00285510
rosa_rugosa	Rorug01G0365500 Rorug01G0365600 Rorug05G0417700 Rorug05G0417800
rosa_samantha	Rh1AG375600 Rh1BG339100 Rh1CG352200 Rh1DG370100 Rh5AG474300 Rh5BG494400 Rh5CG518400 Rh5DG506500
rosa_wichuraiana	Rw1G033050 Rw5G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccII	CGCG	1 cut(s)	626
AciI	CCGC	6 cut(s)	530, 545, 554, 563, 624, 626
AclWI	GGATC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	12, 350
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	392, 645
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	4 cut(s)	148, 374, 404, 409
AluI	AGCT	4 cut(s)	148, 374, 404, 409
Alw21I	GWGCWC	2 cut(s)	169, 411
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	100
ApaI	GGGCCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	137, 299
AspS9I	GGNCC	2 cut(s)	100, 101
AsuHPI	GGTGA	2 cut(s)	118, 437
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	104, 411
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	169, 411
BbvI	GCAGC	2 cut(s)	124, 286
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	631
BisI	GCNGC	4 cut(s)	138, 300, 530, 545
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	4 cut(s)	139, 301, 531, 546
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	100, 101
BmiI	GGNNCC	3 cut(s)	102, 112, 244
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	4 cut(s)	49, 252, 286, 344
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 350
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	12, 350
BseMII	CTCAG	3 cut(s)	166, 182, 396
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	3 cut(s)	140, 577, 580
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	124, 286
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	169, 411
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	12, 350
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	102
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	3 cut(s)	104, 169, 411
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	1 cut(s)	340
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	6 cut(s)	530, 545, 554, 563, 624, 626
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	165, 181, 397
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	3 cut(s)	102, 112, 244
BspPI	GGATC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	4 cut(s)	152, 168, 335, 405
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 371, 553, 562
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	2 cut(s)	124, 286
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	100, 101
Cfr42I	CCGCGG	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	3 cut(s)	94, 268, 358
CviJI	RGCY	9 cut(s)	102, 148, 334, 374, 404, 409, 488, 509, 544
CviKI_1	RGCY	9 cut(s)	102, 148, 334, 374, 404, 409, 488, 509, 544
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	152, 168, 335, 405
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	104, 411
Eco32I	GATATC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	359
EcoT38I	GRGCYC	2 cut(s)	104, 411
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	3 cut(s)	97, 271, 361
FatI	CATG	3 cut(s)	93, 267, 357
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	138, 300, 530, 545
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	2 cut(s)	104, 411
Fsp4HI	GCNGC	4 cut(s)	138, 300, 530, 545
GluI	GCNGC	4 cut(s)	138, 300, 530, 545
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	3 cut(s)	97, 271, 361
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	2 cut(s)	283, 457
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	2 cut(s)	118, 437
Hpy166II	GTNNAC	3 cut(s)	229, 287, 606
Hpy188I	TCNGA	2 cut(s)	25, 155
Hpy188III	TCNNGA	2 cut(s)	6, 170
Hpy8I	GTNNAC	3 cut(s)	229, 287, 606
HpyAV	CCTTC	4 cut(s)	153, 473, 477, 670
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	302, 357, 379, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 371, 553, 562
HpyF3I	CTNAG	4 cut(s)	152, 168, 335, 405
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	97, 271, 361
KspI	CCGCGG	1 cut(s)	627
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	124, 286
LweI	GCATC	4 cut(s)	49, 252, 286, 344
MaeII	ACGT	1 cut(s)	252
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	52, 57, 96, 99, 585, 588
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	3 cut(s)	104, 169, 411
MluCI	AATT	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	292
Mph1103I	ATGCAT	1 cut(s)	359
MseI	TTAA	3 cut(s)	45, 435, 670
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	299, 371, 553, 562
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	97, 271, 361
NlaIV	GGNNCC	3 cut(s)	102, 112, 244
NsiI	ATGCAT	1 cut(s)	359
NspI	RCATGY	1 cut(s)	97
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	457
PflMI	CCANNNNNTGG	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	139, 301, 531, 546
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PscI	ACATGT	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	102, 112, 244
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	100, 101
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	411
SacII	CCGCGG	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	45, 435, 670
SatI	GCNGC	4 cut(s)	138, 300, 530, 545
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	100, 101
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	3 cut(s)	104, 169, 411
SfaNI	GCATC	4 cut(s)	49, 252, 286, 344
SfcI	CTRYAG	1 cut(s)	631
Sfr303I	CCGCGG	1 cut(s)	627
SgrBI	CCGCGG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	472
SsiI	CCGC	6 cut(s)	530, 545, 554, 563, 624, 626
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	106
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	76, 515
TasI	AATT	1 cut(s)	472
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	2 cut(s)	532, 547
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	45, 435, 670
Tru9I	TTAA	3 cut(s)	45, 435, 670
TseI	GCWGC	2 cut(s)	137, 299
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	350
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	2 cut(s)	236, 265
Zsp2I	ATGCAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.