Rorug01G0365500

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003044
Physical Location & Seq
Forward (+)
48060639 .. 48061028
390 bp
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UTR
Exon/CDS
Intron
Rorug01G0365500.1

Sequence Viewer

Length: 390 bp
ATGTATGTTGTGATTTCAAGGAACACAAGAATTCCCGTAAAAGTGAACGTTAATGGGACTACTGCATATGACAACCAGATTTCTGCCCTTTTTCCAATTTATGAGGGGGAGAGTTCAACAACATTAGATAATAACTATTTGGGTCAATTTAAACTCACTGATATTCCTCCAGTTCCTCGGGGTGTTGCTAAATTCGATATCTGGTTTGACATTGATGCGAACAGTATCTTAAGCGTCTTTGCTGAGGACGTGTCCACCGGCCAGAAGAAAGAAATTACAATCTCTAATATATACAGAGATGCTAATTTTGTTGCTGATCACTTAGCTGCTTTGGCTCATAACTCTCAGACGCTTTCAGTTTTGTTTTTCTGCCTTGTGTCCCCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

4.91

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 3 - 98 1e-20 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 2 cut(s) 30, 191
AflII CTTAAG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 18, 117
AjiI CACGTC 1 cut(s) 250
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 30, 191
AvaI CYCGRG 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 313
BclI TGATCA 1 cut(s) 316
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 250
BmsI GCATC 2 cut(s) 205, 289
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 234, 359
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 313
BshFI GGCC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 70, 364
BsmFI GGGAC 2 cut(s) 70, 364
BsnI GGCC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 177
Bsp143I GATC 1 cut(s) 316
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 235, 358
BspTI CTTAAG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 229
BstDEI CTNAG 3 cut(s) 243, 322, 345
BstKTI GATC 1 cut(s) 319
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 261
BtrI CACGTC 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 2 cut(s) 223, 358
CviJI RGCY 3 cut(s) 261, 326, 335
CviKI_1 RGCY 3 cut(s) 261, 326, 335
DdeI CTNAG 3 cut(s) 243, 322, 345
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraI TTTAAA 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 259
Eco32I GATATC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 30
EcoRV GATATC 1 cut(s) 199
FaiI YATR 7 cut(s) 6, 67, 69, 102, 290, 292, 339
FaqI GGGAC 2 cut(s) 70, 364
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 258
HgaI GACGC 2 cut(s) 223, 358
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 46, 255
Hpy188I TCNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 46, 255
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 48, 249
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 3 cut(s) 243, 322, 345
HpySE526I ACGT 2 cut(s) 48, 249
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LpnPI CCDG 5 cut(s) 89, 183, 187, 271, 275
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 205, 289
MaeII ACGT 2 cut(s) 48, 249
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 1 cut(s) 277
MluCI AATT 6 cut(s) 30, 96, 146, 191, 273, 304
MnlI CCTC 4 cut(s) 97, 177, 186, 238
MseI TTAA 3 cut(s) 51, 150, 230
MspCI CTTAAG 1 cut(s) 229
MspI CCGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeI CATATG 1 cut(s) 67
NdeII GATC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 328
Psp1406I AACGTT 1 cut(s) 48
SaqAI TTAA 3 cut(s) 51, 150, 230
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 1 cut(s) 316
SetI ASST 3 cut(s) 51, 252, 328
SfaNI GCATC 2 cut(s) 205, 289
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 6 cut(s) 30, 96, 146, 191, 273, 304
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 2 cut(s) 51, 252
TaqI TCGA 1 cut(s) 195
TasI AATT 6 cut(s) 30, 96, 146, 191, 273, 304
Tru1I TTAA 3 cut(s) 51, 150, 230
Tru9I TTAA 3 cut(s) 51, 150, 230
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 326
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 229
XapI RAATTY 2 cut(s) 30, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.