Rroxscaffold_4G00285510

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003044
Physical Location & Seq
Forward (+)
6794641 .. 6795982
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285510.1

Sequence Viewer

Length: 717 bp
ATGTCCAGAGAAAGGGAGAGATTTGATTTTGATGAGATAGGGAAGAAGCTGAAGAGAGAAATAGATGCTTCTAATTCTTCTTCTGCTCATCACCATCATCAAATGGGAAGAAGACACATGTTGGGTCCTCCCGGAACCCTAAACACGATCACGCCATGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGCGCTCAAGAATGCCCCTTCTCTCCCTACTTCTCTCCCCACGAACCCCAGAAGTTCGCCTCCGTCCACAAAGTGTTTGGCGCCAGCAACGTATCCAAGATGCTTATGGAGGTACCGGAGAGTCAAAGAGCAGACGCGGCGAATAGTCTTGTGTACGAGGCGAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCGATTTCGGCTTTGCAGCAGCAAGTTCAATCTTTACAAGCTGAGCTTAATGCTGTGAGGGGTGAGATACTTAAGTACAAATATAGGGAAGCAAATCTCATGGATCCTTCTTCTCATCATCATCATCAAGTGGCAGCTTTGTTCTCTACTACTTCCGGGGGAGCTGTTTCAGTTGCTTCCTCCCACCGTCCACACAGCCGCCACCGCCACCACCACCGCCTCCTCCTCTCCCTCCTACTTCCTCCTCCTCATCTATGTATACTCAACCCAACAGCGCCGCCGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTACTTTGGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

238

Amino Acids

26.64

Weight (kDa)

9.59

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 52 - 148 6.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 266, 298
AccI GTMKAC 1 cut(s) 646
AccII CGCG 1 cut(s) 323
AciI CCGC 5 cut(s) 323, 586, 592, 604, 665
AclWI GGATC 3 cut(s) 359, 485, 498
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 4 cut(s) 300, 341, 374, 464
AfiI CCNNNNNNNGG 2 cut(s) 12, 374
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 416, 686
AluBI AGCT 6 cut(s) 49, 172, 428, 433, 524, 551
AluI AGCT 6 cut(s) 49, 172, 428, 433, 524, 551
AlwI GGATC 3 cut(s) 359, 485, 498
ApeKI GCWGC 4 cut(s) 161, 403, 406, 521
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 3 cut(s) 191, 269, 664
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 132, 544
AsuHPI GGTGA 2 cut(s) 83, 461
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 446, 479
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 2 cut(s) 266, 298
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 173, 415, 418, 533
BccI CCATC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 2 cut(s) 132, 544
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 2 cut(s) 270, 665
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 7 cut(s) 162, 324, 404, 407, 522, 586, 665
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 7 cut(s) 163, 325, 405, 408, 523, 587, 666
Bme1390I CCNGG 2 cut(s) 132, 544
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 5 cut(s) 126, 136, 268, 300, 492
BmrFI CCNGG 2 cut(s) 132, 544
BmsI GCATC 4 cut(s) 55, 176, 276, 368
BpiI GAAGAC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 177, 196
BpuMI CCSGG 2 cut(s) 132, 544
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 2 cut(s) 301, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 374
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 12, 374
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 4 cut(s) 599, 602, 621, 624
BseXI GCAGC 4 cut(s) 173, 415, 418, 533
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 323
BshNI GGYRCC 2 cut(s) 266, 298
BsiSI CCGG 4 cut(s) 132, 302, 368, 543
BslI CCNNNNNNNGG 2 cut(s) 12, 374
BsmI GAATGC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 147, 364, 490
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 5 cut(s) 323, 586, 592, 604, 665
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 5 cut(s) 126, 136, 268, 300, 492
BspPI GGATC 3 cut(s) 359, 485, 498
BspT107I GGYRCC 2 cut(s) 266, 298
BspTI CTTAAG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 3 cut(s) 147, 364, 490
BssNAI GTATAC 1 cut(s) 647
BssNI GRCGYC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 575
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 166, 170, 271
BstDEI CTNAG 2 cut(s) 359, 429
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 2 cut(s) 270, 665
BstHHI GCGC 3 cut(s) 191, 269, 664
BstKTI GATC 3 cut(s) 150, 367, 493
BstMBI GATC 3 cut(s) 147, 364, 490
BstMWI GCNNNNNNNGC 3 cut(s) 323, 395, 591
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 130, 542
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 173, 415, 418, 533
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 364, 490
BstYI RGATCY 2 cut(s) 364, 490
BstZ17I GTATAC 1 cut(s) 647
BsuI GTATCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 166, 170, 271
CfoI GCGC 3 cut(s) 191, 269, 664
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 329
Csp6I GTAC 4 cut(s) 299, 340, 373, 463
CviAII CATG 4 cut(s) 118, 156, 382, 487
CviQI GTAC 4 cut(s) 299, 340, 373, 463
DdeI CTNAG 2 cut(s) 359, 429
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 149, 366, 492
DpnII GATC 3 cut(s) 147, 364, 490
DraIII CACNNNGTG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 383
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 4 cut(s) 121, 159, 385, 490
FaiI YATR 9 cut(s) 119, 157, 293, 383, 471, 488, 643, 647, 674
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 4 cut(s) 117, 155, 381, 486
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 7 cut(s) 162, 324, 404, 407, 522, 586, 665
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 7 cut(s) 162, 324, 404, 407, 522, 586, 665
GlaI GCGC 3 cut(s) 190, 268, 663
GluI GCNGC 7 cut(s) 162, 324, 404, 407, 522, 586, 665
HaeII RGCGCY 2 cut(s) 270, 665
HapII CCGG 4 cut(s) 132, 302, 368, 543
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 191, 269, 664
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 121, 159, 385, 490
Hin6I GCGC 3 cut(s) 189, 267, 662
HinP1I GCGC 3 cut(s) 189, 267, 662
HinfI GANTC 1 cut(s) 307
HpaII CCGG 4 cut(s) 132, 302, 368, 543
HphI GGTGA 2 cut(s) 83, 461
Hpy166II GTNNAC 5 cut(s) 253, 340, 373, 578, 647
Hpy188III TCNNGA 3 cut(s) 6, 175, 194
Hpy8I GTNNAC 5 cut(s) 253, 340, 373, 578, 647
HpyAV CCTTC 2 cut(s) 214, 504
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 2 cut(s) 276, 351
HpyCH4V TGCA 4 cut(s) 161, 168, 381, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 395, 591
HpyF3I CTNAG 2 cut(s) 359, 429
HpySE526I ACGT 2 cut(s) 276, 351
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 121, 159, 385, 490
HspAI GCGC 3 cut(s) 189, 267, 662
KasI GGCGCC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 147, 364, 490
LmnI GCTCC 2 cut(s) 386, 548
LpnPI CCDG 8 cut(s) 19, 145, 178, 248, 283, 315, 381, 556
Lsp1109I GCAGC 4 cut(s) 173, 415, 418, 533
LweI GCATC 4 cut(s) 55, 176, 276, 368
MaeII ACGT 2 cut(s) 276, 351
MalI GATC 3 cut(s) 149, 366, 492
MboI GATC 3 cut(s) 147, 364, 490
MboII GAAGA 9 cut(s) 55, 64, 69, 72, 120, 123, 192, 195, 489
MflI RGATCY 2 cut(s) 364, 490
MluCI AATT 2 cut(s) 73, 712
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 4 cut(s) 435, 459, 711, 715
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 4 cut(s) 132, 302, 368, 543
MspR9I CCNGG 2 cut(s) 132, 544
Mva1269I GAATGC 1 cut(s) 203
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 323, 395, 591
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 132, 544
NdeII GATC 3 cut(s) 147, 364, 490
NlaIII CATG 4 cut(s) 121, 159, 385, 490
NlaIV GGNNCC 5 cut(s) 126, 136, 268, 300, 492
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 121
PacI TTAATTAA 1 cut(s) 715
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 7 cut(s) 163, 325, 405, 408, 523, 587, 666
PleI GAGTC 1 cut(s) 315
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 125
PspN4I GGNNCC 5 cut(s) 126, 136, 268, 300, 492
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PsuI RGATCY 2 cut(s) 364, 490
RsaI GTAC 4 cut(s) 300, 341, 374, 464
RsaNI GTAC 4 cut(s) 299, 340, 373, 463
SaqAI TTAA 4 cut(s) 435, 459, 711, 715
SatI GCNGC 7 cut(s) 162, 324, 404, 407, 522, 586, 665
Sau3AI GATC 3 cut(s) 147, 364, 490
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 132, 544
SetI ASST 9 cut(s) 51, 174, 279, 300, 354, 430, 435, 526, 553
SfaNI GCATC 4 cut(s) 55, 176, 276, 368
SfcI CTRYAG 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 175, 192, 458
SmoI CTYRAG 3 cut(s) 175, 192, 458
Sse9I AATT 2 cut(s) 73, 712
SsiI CCGC 5 cut(s) 323, 586, 592, 604, 665
SspDI GGCGCC 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 130, 542
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 2 cut(s) 279, 354
TasI AATT 2 cut(s) 73, 712
TatI WGTACW 1 cut(s) 462
TauI GCSGC 3 cut(s) 326, 588, 667
Tru1I TTAA 4 cut(s) 435, 459, 711, 715
Tru9I TTAA 4 cut(s) 435, 459, 711, 715
TseI GCWGC 4 cut(s) 161, 403, 406, 521
TspGWI ACGGA 2 cut(s) 238, 390
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 289
XmiI GTMKAC 1 cut(s) 646
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.