pycom01g17770

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0003044
Physical Location & Seq
Reverse (-)
16971410 .. 16972626
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17770.3

Sequence Viewer

Length: 675 bp
ATGTCCAGAGAAAGGGAGAGATTTGACGAGGTAGGCAAGAAATTTAAAAGAGAAACTGATGCTTCCCATTATCAAATGGGAAGAAGACACATGTTGGGCCCTCCTGGAACCCTAAACACCATCACTCCTTGTGCTGCCTGTAAACTCCTCAGACGAAGGTGTGCACAGGAATGCCCCTTCTCTCCTTACTTCTCTCCCCACGAACCCCAGAAGTTTGCCTCGGTCCATAAGGTCTTTGGTGCCAGCAACGTCTCGAAGATGCTCATGGAGGTGCCGGAGACTCAAAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGGCTAAGAGATCCGGTGTATGGATGCATGGGTGTAATTTCAGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAGCTAAACGCAGTAAGGGGCGAGATACTTAAATACAAATATAGGGAAGCAAATCTCCTTCCTTCTAATTCTCATCATCATATGGCTTTGTTCTCTACTTCCGGGGCTGTTTCCGTTGCTTCCTTGCCGCAGACCCCACAACCACTGCTGCCACTGTCACCACCACCTCCTTTACCTCCTACTTCTTCCTCTTCTTCTATGTACACTAATCAACAAACCAGTGCCGCGGACTATAGCTCCCTTTCAAGTGAAAATGTTTCCTTCTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

225

Amino Acids

24.76

Weight (kDa)

8.99

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 239, 271
AccII CGCG 1 cut(s) 629
AciI CCGC 3 cut(s) 530, 627, 629
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 2 cut(s) 12, 347
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 2 cut(s) 389, 648
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 371, 401, 406, 639
AluI AGCT 4 cut(s) 371, 401, 406, 639
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 256, 272
Alw44I GTGCAC 1 cut(s) 162
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 97
ApaI GGGCCC 1 cut(s) 101
ApaLI GTGCAC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 134, 296, 550
ApoI RAATTY 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 97, 98, 223
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 2 cut(s) 101, 166
BanI GGYRCC 2 cut(s) 239, 271
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 121, 308, 537
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 105
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 256, 272
BfmI CTRYAG 1 cut(s) 634
BisI GCNGC 5 cut(s) 135, 297, 530, 551, 627
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 5 cut(s) 136, 298, 531, 552, 628
Bme1390I CCNGG 2 cut(s) 105, 505
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 3 cut(s) 97, 98, 223
BmiI GGNNCC 4 cut(s) 99, 109, 241, 273
BmrFI CCNGG 2 cut(s) 105, 505
BmsI GCATC 4 cut(s) 49, 249, 283, 341
BpiI GAAGAC 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 219, 504, 627
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 623, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 347
Bse1I ACTGG 1 cut(s) 621
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 219, 504, 627
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 12, 347
BseMII CTCAG 2 cut(s) 163, 393
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 2 cut(s) 101, 166
BseXI GCAGC 3 cut(s) 121, 308, 537
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 2 cut(s) 239, 271
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 3 cut(s) 275, 341, 504
BslI CCNNNNNNNGG 2 cut(s) 12, 347
BsmAI GTCTC 2 cut(s) 256, 272
BsmBI CGTCTC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 99
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 101, 166
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 1 cut(s) 337
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 3 cut(s) 530, 627, 629
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 2 cut(s) 162, 394
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 4 cut(s) 99, 109, 241, 273
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 239, 271
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 3 cut(s) 219, 504, 627
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 598
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 149, 332, 402
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 629
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 256, 272
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 103, 503
BstSFI CTRYAG 1 cut(s) 634
BstSLI GKGCMC 2 cut(s) 101, 166
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 3 cut(s) 121, 308, 537
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 3 cut(s) 545, 554, 628
Cac8I GCNNGC 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 97, 98, 223
Cfr42I CCGCGG 1 cut(s) 630
Csp6I GTAC 1 cut(s) 604
CviAII CATG 3 cut(s) 91, 265, 355
CviJI RGCY 8 cut(s) 99, 331, 371, 401, 406, 488, 509, 639
CviKI_1 RGCY 8 cut(s) 99, 331, 371, 401, 406, 488, 509, 639
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 3 cut(s) 149, 332, 402
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 3 cut(s) 94, 268, 358
FatI CATG 3 cut(s) 90, 264, 354
FauNDI CATATG 1 cut(s) 483
Fnu4HI GCNGC 5 cut(s) 135, 297, 530, 551, 627
FokI GGATG 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 5 cut(s) 135, 297, 530, 551, 627
GluI GCNGC 5 cut(s) 135, 297, 530, 551, 627
HaeIII GGCC 1 cut(s) 99
HapII CCGG 3 cut(s) 275, 341, 504
Hin1II CATG 3 cut(s) 94, 268, 358
HinfI GANTC 1 cut(s) 280
HpaII CCGG 3 cut(s) 275, 341, 504
HphI GGTGA 1 cut(s) 552
Hpy166II GTNNAC 3 cut(s) 143, 164, 606
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 6, 253
Hpy8I GTNNAC 3 cut(s) 143, 164, 606
HpyAV CCTTC 5 cut(s) 150, 187, 470, 474, 673
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 164, 296, 354, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 3 cut(s) 149, 332, 402
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 3 cut(s) 94, 268, 358
KspI CCGCGG 1 cut(s) 630
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 3 cut(s) 121, 308, 537
LweI GCATC 4 cut(s) 49, 249, 283, 341
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 558
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 6 cut(s) 93, 96, 268, 579, 585, 588
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 101, 166
MluCI AATT 3 cut(s) 41, 363, 469
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 9 cut(s) 22, 111, 158, 229, 262, 321, 579, 588, 601
Mph1103I ATGCAT 1 cut(s) 356
MseI TTAA 3 cut(s) 45, 432, 673
MslI CAYNNNNRTG 2 cut(s) 169, 269
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 3 cut(s) 275, 341, 504
MspR9I CCNGG 2 cut(s) 105, 505
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 483
NdeII GATC 1 cut(s) 337
NlaIII CATG 3 cut(s) 94, 268, 358
NlaIV GGNNCC 4 cut(s) 99, 109, 241, 273
NmuCI GTSAC 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 356
NspI RCATGY 1 cut(s) 94
PciI ACATGT 1 cut(s) 90
PctI GAATGC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 5 cut(s) 136, 298, 531, 552, 628
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 4 cut(s) 99, 109, 241, 273
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 3 cut(s) 97, 98, 223
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 2 cut(s) 169, 269
SacII CCGCGG 1 cut(s) 630
SaqAI TTAA 3 cut(s) 45, 432, 673
SatI GCNGC 5 cut(s) 135, 297, 530, 551, 627
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 3 cut(s) 97, 98, 223
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 105, 505
SduI GDGCHC 2 cut(s) 101, 166
SfaNI GCATC 4 cut(s) 49, 249, 283, 341
SfcI CTRYAG 1 cut(s) 634
Sfr303I CCGCGG 1 cut(s) 630
SgrBI CCGCGG 1 cut(s) 630
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 169, 269
Sse9I AATT 3 cut(s) 41, 363, 469
SsiI CCGC 3 cut(s) 530, 627, 629
StyD4I CCNGG 2 cut(s) 103, 503
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 211
TasI AATT 3 cut(s) 41, 363, 469
TatI WGTACW 1 cut(s) 603
TauI GCSGC 2 cut(s) 532, 629
Tru1I TTAA 3 cut(s) 45, 432, 673
Tru9I TTAA 3 cut(s) 45, 432, 673
TscAI CASTG 3 cut(s) 552, 561, 628
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 3 cut(s) 134, 296, 550
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 3 cut(s) 552, 561, 628
VneI GTGCAC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 41
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.