MD11G1061600.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003044
Physical Location & Seq
Reverse (-)
5351936 .. 5353039
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1061600.v1.1.491

Sequence Viewer

Length: 777 bp
ATGTCCACAAACAGGGAGATCACAACATTGGATGAGACAGGAAAGAAGATCAGGAGAGAAAGTGATGCATCTGTTGATGATCAAATGGGGATCATGAGCACTACTCGAATTTCGTCATCATCGTCATCATCATTTGGTGTTCCTCATCAAGGGATGATGATGATGAGTACAACAACTTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCTCCCTACTTCTCTCCGCATGAACCCCAAAAGTTTTCAGCCGTCCACAAAGTCTTTGGTGCAAGCAATGTTTCCAAGATGCTAATGGAGGTGGCTGAGAATCAAAGAGCTGATGCAGCCAATAGTCTAGTTTATGAGGCAAATCTGAGGCTGAGAGACCCTGTGTATGGGTGCATGGGTGTAATTTTAGCCTTGCACCAACAAATTCAATCTCTACAAGCTGAACTCAATGCAGTAAGGACCGAAATATTGAGATATAAATACAAAGAGGCCGCTAGTCGCAGTGTCGTTTCTCCTAGGGGTATTATTCACCATTCTGCTTTGGTTTCTAGTTCTGGGATGGTGTCCCTTGCTGCGCAACCACAAGCGATTTCACCACCACCGCCGCCGCCACTACCACCAGCATCAGCTCAGTCTTCAGTTGTCTTTTCTTCGTCATCTTCATCTTCAGCTTCTTCTGTATACAATCCATCTACAAACACGATGGGCTATAGCTCCATGTCAAGCGAAAATATTCCGTATTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

259

Amino Acids

27.88

Weight (kDa)

8.27

Isoelectric Point (pI)

73.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 65 - 162 6.5e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 603
AccI GTMKAC 1 cut(s) 708
AciI CCGC 5 cut(s) 263, 519, 629, 632, 635
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 108, 450
AcuI CTGAAG 3 cut(s) 252, 648, 678
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 12, 149, 413
AgsI TTSAA 2 cut(s) 181, 455
AluBI AGCT 6 cut(s) 211, 356, 467, 656, 698, 741
AluI AGCT 6 cut(s) 211, 356, 467, 656, 698, 741
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 29, 396
AlwI GGATC 1 cut(s) 98
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 3 cut(s) 200, 362, 599
ApoI RAATTY 2 cut(s) 108, 450
Asp700I GAANNNNTTC 1 cut(s) 759
AspA2I CCTAGG 1 cut(s) 542
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 548, 612
AvaII GGWCC 1 cut(s) 486
AvrII CCTAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 187, 374, 586
BccI CCATC 3 cut(s) 580, 724, 724
BceAI ACGGC 1 cut(s) 272
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 29, 396
BfaI CTAG 4 cut(s) 374, 522, 543, 576
BfmI CTRYAG 1 cut(s) 736
BisI GCNGC 6 cut(s) 201, 363, 519, 600, 632, 635
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 6 cut(s) 202, 364, 520, 601, 633, 636
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmsI GCATC 5 cut(s) 55, 77, 315, 349, 659
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpuEI CTTGAG 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 149, 413
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 3 cut(s) 37, 159, 591
BseLI CCNNNNNNNGG 3 cut(s) 12, 149, 413
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 4 cut(s) 333, 383, 389, 671
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 3 cut(s) 187, 374, 586
BshFI GGCC 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 3 cut(s) 12, 149, 413
BsmAI GTCTC 2 cut(s) 29, 396
BsmFI GGGAC 1 cut(s) 577
BsnI GGCC 1 cut(s) 518
Bso31I GGTCTC 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 101, 242
Bsp143I GATC 4 cut(s) 18, 48, 79, 90
BspACI CCGC 5 cut(s) 263, 519, 629, 632, 635
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 4 cut(s) 334, 384, 390, 670
BspHI TCATGA 1 cut(s) 93
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 4 cut(s) 18, 48, 79, 90
BssNAI GTATAC 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 542
Bst1107I GTATAC 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 342, 392, 398, 657
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 37, 159, 591
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 4 cut(s) 21, 51, 82, 93
BstMAI GTCTC 2 cut(s) 29, 396
BstMBI GATC 4 cut(s) 18, 48, 79, 90
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 736
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 187, 374, 586
BstV2I GAAGAC 1 cut(s) 654
BstZ17I GTATAC 1 cut(s) 709
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 3 cut(s) 37, 159, 591
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 168
CviAII CATG 5 cut(s) 94, 204, 266, 421, 745
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 4 cut(s) 342, 392, 398, 657
DpnI GATC 4 cut(s) 20, 50, 81, 92
DpnII GATC 4 cut(s) 18, 48, 79, 90
DraIII CACNNNGTG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 486
Eco57I CTGAAG 3 cut(s) 252, 648, 678
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 542
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 5 cut(s) 97, 207, 269, 424, 748
FaqI GGGAC 1 cut(s) 577
FatI CATG 5 cut(s) 93, 203, 265, 420, 744
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 6 cut(s) 201, 363, 519, 600, 632, 635
FokI GGATG 3 cut(s) 44, 166, 598
Fsp4HI GCNGC 6 cut(s) 201, 363, 519, 600, 632, 635
FspBI CTAG 4 cut(s) 374, 522, 543, 576
FspI TGCGCA 1 cut(s) 603
GlaI GCGC 1 cut(s) 603
GluI GCNGC 6 cut(s) 201, 363, 519, 600, 632, 635
HaeIII GGCC 1 cut(s) 518
HhaI GCGC 1 cut(s) 604
Hin1II CATG 5 cut(s) 97, 207, 269, 424, 748
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 1 cut(s) 346
HphI GGTGA 2 cut(s) 548, 612
Hpy166II GTNNAC 3 cut(s) 6, 292, 709
Hpy188I TCNGA 1 cut(s) 393
Hpy188III TCNNGA 3 cut(s) 52, 94, 214
Hpy8I GTNNAC 3 cut(s) 6, 292, 709
HpyCH4V TGCA 7 cut(s) 68, 203, 308, 362, 420, 442, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 4 cut(s) 342, 392, 398, 657
Hsp92II CATG 5 cut(s) 97, 207, 269, 424, 748
HspAI GCGC 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 18, 48, 79, 90
LmnI GCTCC 1 cut(s) 746
LpnPI CCDG 5 cut(s) 24, 37, 420, 567, 660
Lsp1109I GCAGC 3 cut(s) 187, 374, 586
LweI GCATC 5 cut(s) 55, 77, 315, 349, 659
MaeI CTAG 4 cut(s) 374, 522, 543, 576
MalI GATC 4 cut(s) 20, 50, 81, 92
MboI GATC 4 cut(s) 18, 48, 79, 90
MboII GAAGA 9 cut(s) 58, 231, 234, 245, 654, 669, 678, 684, 693
MhlI GDGCHC 2 cut(s) 101, 242
MluCI AATT 3 cut(s) 108, 429, 450
MnlI CCTC 5 cut(s) 153, 328, 376, 387, 508
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 1 cut(s) 775
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 4 cut(s) 18, 48, 79, 90
NlaIII CATG 5 cut(s) 97, 207, 269, 424, 748
NsbI TGCGCA 1 cut(s) 603
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 207
PagI TCATGA 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 6 cut(s) 202, 364, 520, 601, 633, 636
PspPI GGNCC 1 cut(s) 486
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 775
SatI GCNGC 6 cut(s) 201, 363, 519, 600, 632, 635
Sau3AI GATC 4 cut(s) 18, 48, 79, 90
Sau96I GGNCC 1 cut(s) 486
SduI GDGCHC 2 cut(s) 101, 242
SetI ASST 8 cut(s) 196, 213, 339, 358, 469, 658, 700, 743
SfaNI GCATC 5 cut(s) 55, 77, 315, 349, 659
SfcI CTRYAG 1 cut(s) 736
SinI GGWCC 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 3 cut(s) 108, 429, 450
SsiI CCGC 5 cut(s) 263, 519, 629, 632, 635
SspI AATATT 2 cut(s) 495, 760
SspMI CTAG 4 cut(s) 374, 522, 543, 576
StyI CCWWGG 1 cut(s) 542
TaqI TCGA 2 cut(s) 106, 771
TaqII GACCGA 1 cut(s) 503
TasI AATT 3 cut(s) 108, 429, 450
TatI WGTACW 1 cut(s) 167
TauI GCSGC 3 cut(s) 521, 634, 637
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 775
Tru9I TTAA 1 cut(s) 775
TscAI CASTG 1 cut(s) 535
TseI GCWGC 3 cut(s) 200, 362, 599
TspDTI ATGAA 2 cut(s) 282, 678
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 486
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 2 cut(s) 108, 450
XceI RCATGY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 2 cut(s) 299, 328
XmaJI CCTAGG 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 4 cut(s) 374, 522, 543, 576
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.