Rh1CG352200

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003044
Physical Location & Seq
Reverse (-)
62818490 .. 62819752
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG352200.1

Sequence Viewer

Length: 714 bp
ATGTCCAGAGAAAGGGAGAGATTTGATTTTGATGAGATAGGGAAGAAGCTGAAGAGAGAAATAGATGCTGCTAATTCTTCTTCTGCTCATCACCATCATCAAATGGGAAGAAGACACATGTTGGGTCCCCCCGGAACCCTAAACACGATCACGCCATGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGCGCTCAAGAATGCCCCTTCTCTCCCTACTTCTCTCCCCACGAACCCCAGAAGTTCGCCTCCGTCCACAAAGTGTTTGGCGCCAGCAACGTATCCAAGATGCTTATGGAGGTACCGGAGAGTCAAAGAGCAGACGCGGCGAATAGTCTTGTGTACGAGGCGAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCGATTTCGGCTTTGCAGCAGCAAGTTCAATCTTTACAAGCTGAGCTTAATGCTGTGAGGGGTGAGATACTTAAGTACAAATATAGGGAAGCAAATCTCATGGATCCTTCTTCTCATCATCATCATCAAGTGGCAGCTTTGTTCTCTACTACTTCCGGGGGAGCTGTTTCAGTTGCTTCCCTCGCACCGTCTACACAGCCGCCTCCGCCACCGCCACCGCCTCCTCCTCTCCCTCCTACTTCCTCCTCCTCATCTATGTACACTCAACCCAACAGCGCCGCCGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTACTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

8.59

Isoelectric Point (pI)

66.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 52 - 148 6.8e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 266, 298
AccI GTMKAC 1 cut(s) 578
AccII CGCG 1 cut(s) 323
AciI CCGC 6 cut(s) 323, 587, 593, 599, 605, 666
AclWI GGATC 3 cut(s) 359, 485, 498
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 5 cut(s) 300, 341, 374, 464, 647
AfiI CCNNNNNNNGG 2 cut(s) 12, 374
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 416, 687
AluBI AGCT 6 cut(s) 49, 172, 428, 433, 524, 551
AluI AGCT 6 cut(s) 49, 172, 428, 433, 524, 551
AlwI GGATC 3 cut(s) 359, 485, 498
ApeKI GCWGC 5 cut(s) 68, 161, 403, 406, 521
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 3 cut(s) 191, 269, 665
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 132, 544
AsuHPI GGTGA 2 cut(s) 83, 461
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 446, 479
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 2 cut(s) 266, 298
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 55, 173, 415, 418, 533
BccI CCATC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 2 cut(s) 132, 544
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 2 cut(s) 270, 666
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 8 cut(s) 69, 162, 324, 404, 407, 522, 587, 666
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 8 cut(s) 70, 163, 325, 405, 408, 523, 588, 667
Bme1390I CCNGG 2 cut(s) 132, 544
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
BmrFI CCNGG 2 cut(s) 132, 544
BmsI GCATC 4 cut(s) 55, 176, 276, 368
BpiI GAAGAC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 177, 196
BpuMI CCSGG 2 cut(s) 132, 544
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 130, 543
BsaWI WCCGGW 2 cut(s) 301, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 374
BseDI CCNNGG 2 cut(s) 130, 543
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 12, 374
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 4 cut(s) 600, 603, 622, 625
BseXI GCAGC 5 cut(s) 55, 173, 415, 418, 533
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 323
BshNI GGYRCC 2 cut(s) 266, 298
BsiSI CCGG 4 cut(s) 132, 302, 368, 543
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 12, 374
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 3 cut(s) 147, 364, 490
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 6 cut(s) 323, 587, 593, 599, 605, 666
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
BspPI GGATC 3 cut(s) 359, 485, 498
BspT107I GGYRCC 2 cut(s) 266, 298
BspTI CTTAAG 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 645
BssECI CCNNGG 2 cut(s) 130, 543
BssMI GATC 3 cut(s) 147, 364, 490
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 576
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 645
BstC8I GCNNGC 3 cut(s) 166, 170, 271
BstDEI CTNAG 2 cut(s) 359, 429
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 2 cut(s) 270, 666
BstHHI GCGC 3 cut(s) 191, 269, 665
BstKTI GATC 3 cut(s) 150, 367, 493
BstMBI GATC 3 cut(s) 147, 364, 490
BstMWI GCNNNNNNNGC 4 cut(s) 323, 395, 569, 592
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 130, 542
BstSFI CTRYAG 1 cut(s) 673
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 5 cut(s) 55, 173, 415, 418, 533
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 364, 490
BstYI RGATCY 2 cut(s) 364, 490
BsuI GTATCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 166, 170, 271
CfoI GCGC 3 cut(s) 191, 269, 665
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 329
Csp6I GTAC 5 cut(s) 299, 340, 373, 463, 646
CviAII CATG 4 cut(s) 118, 156, 382, 487
CviQI GTAC 5 cut(s) 299, 340, 373, 463, 646
DdeI CTNAG 2 cut(s) 359, 429
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 149, 366, 492
DpnII GATC 3 cut(s) 147, 364, 490
DraIII CACNNNGTG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 383
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 4 cut(s) 121, 159, 385, 490
FaiI YATR 8 cut(s) 119, 157, 293, 383, 471, 488, 644, 675
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 111
FatI CATG 4 cut(s) 117, 155, 381, 486
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 8 cut(s) 69, 162, 324, 404, 407, 522, 587, 666
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 8 cut(s) 69, 162, 324, 404, 407, 522, 587, 666
GlaI GCGC 3 cut(s) 190, 268, 664
GluI GCNGC 8 cut(s) 69, 162, 324, 404, 407, 522, 587, 666
HaeII RGCGCY 2 cut(s) 270, 666
HapII CCGG 4 cut(s) 132, 302, 368, 543
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 191, 269, 665
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 121, 159, 385, 490
Hin6I GCGC 3 cut(s) 189, 267, 663
HinP1I GCGC 3 cut(s) 189, 267, 663
HinfI GANTC 1 cut(s) 307
HpaII CCGG 4 cut(s) 132, 302, 368, 543
HphI GGTGA 2 cut(s) 83, 461
Hpy166II GTNNAC 5 cut(s) 253, 340, 373, 579, 648
Hpy188III TCNNGA 3 cut(s) 6, 175, 194
Hpy8I GTNNAC 5 cut(s) 253, 340, 373, 579, 648
HpyAV CCTTC 2 cut(s) 214, 504
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4IV ACGT 2 cut(s) 276, 351
HpyCH4V TGCA 4 cut(s) 161, 168, 381, 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 395, 569, 592
HpyF3I CTNAG 2 cut(s) 359, 429
HpySE526I ACGT 2 cut(s) 276, 351
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 121, 159, 385, 490
HspAI GCGC 3 cut(s) 189, 267, 663
KasI GGCGCC 1 cut(s) 266
KflI GGGWCCC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 147, 364, 490
LmnI GCTCC 2 cut(s) 386, 548
LpnPI CCDG 8 cut(s) 19, 145, 178, 248, 283, 315, 381, 556
Lsp1109I GCAGC 5 cut(s) 55, 173, 415, 418, 533
LweI GCATC 4 cut(s) 55, 176, 276, 368
MaeII ACGT 2 cut(s) 276, 351
MalI GATC 3 cut(s) 149, 366, 492
MboI GATC 3 cut(s) 147, 364, 490
MboII GAAGA 9 cut(s) 55, 64, 69, 72, 120, 123, 192, 195, 489
MflI RGATCY 2 cut(s) 364, 490
MluCI AATT 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 3 cut(s) 435, 459, 712
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 4 cut(s) 132, 302, 368, 543
MspR9I CCNGG 2 cut(s) 132, 544
Mva1269I GAATGC 1 cut(s) 203
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 323, 395, 569, 592
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 132, 544
NdeII GATC 3 cut(s) 147, 364, 490
NlaIII CATG 4 cut(s) 121, 159, 385, 490
NlaIV GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 8 cut(s) 70, 163, 325, 405, 408, 523, 588, 667
PleI GAGTC 1 cut(s) 315
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 125
PspN4I GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PsuI RGATCY 2 cut(s) 364, 490
RsaI GTAC 5 cut(s) 300, 341, 374, 464, 647
RsaNI GTAC 5 cut(s) 299, 340, 373, 463, 646
SaqAI TTAA 3 cut(s) 435, 459, 712
SatI GCNGC 8 cut(s) 69, 162, 324, 404, 407, 522, 587, 666
Sau3AI GATC 3 cut(s) 147, 364, 490
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 132, 544
SetI ASST 9 cut(s) 51, 174, 279, 300, 354, 430, 435, 526, 553
SfaNI GCATC 4 cut(s) 55, 176, 276, 368
SfcI CTRYAG 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 175, 192, 458
SmoI CTYRAG 3 cut(s) 175, 192, 458
Sse9I AATT 1 cut(s) 73
SsiI CCGC 6 cut(s) 323, 587, 593, 599, 605, 666
SspDI GGCGCC 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 130, 542
TaaI ACNGT 1 cut(s) 576
TaiI ACGT 2 cut(s) 279, 354
TasI AATT 1 cut(s) 73
TatI WGTACW 2 cut(s) 462, 645
TauI GCSGC 3 cut(s) 326, 589, 668
Tru1I TTAA 3 cut(s) 435, 459, 712
Tru9I TTAA 3 cut(s) 435, 459, 712
TseI GCWGC 5 cut(s) 68, 161, 403, 406, 521
TspGWI ACGGA 2 cut(s) 238, 390
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 289
XmiI GTMKAC 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.