Rw1G033050

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003044
Physical Location & Seq
Reverse (-)
61215022 .. 61216154
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033050.1

Sequence Viewer

Length: 723 bp
ATGTCCAGAGAAAGGGAGAGATTTGATTTTGATGAGATAGGGAAGAAGCTGAAGAGAGAAATAGATGCTCCTAATTCTTCTTCTGCTCATCACCATCATCAAATGGGAAGAAGACACATGTTGGGTCCCCCCGGAACCCTAAACACGATCACGCCATGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGCGCTCAAGAATGCCCTTTCTCTCCCTACTTCTCTCCCCACGAACCCCAGAAGTTCGCCTCCGTCCACAAAGTGTTTGGCGCCAGCAACGTATCCAAGATGCTTATGGAGGTACCGGAGAGTCAAAGAGCAGACGCGGCGAATAGTCTTGTGTACGAGGCGAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCGATTTCGGCTTTGCAGCAGCAAGTTCAATCTTTACAAGCTGAGCTTAATGCTGTGAGGGGTGAGATACTTAAGTACAAATATAGGGAAGCAAATCTCATGGATCCTTCTTCTCATCATCATCATCATCATCATCAAGTGGCAGCTTTGTTCTCTACTACTTCCGGGGGAGCTGTTTCAGTTGCTTCCCTCCCACCGTCCACACAGCCGCCACCGCCACCGCCACCGCCTCCTCCTCTGCCTCCTACTTCCTCCTCCTCATCTATGTACACTCAACCCAACAGCGCCGCCGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTACTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

240

Amino Acids

26.39

Weight (kDa)

8.59

Isoelectric Point (pI)

66.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 52 - 148 7e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 266, 298
AccII CGCG 1 cut(s) 323
AciI CCGC 6 cut(s) 323, 596, 602, 608, 614, 675
AclWI GGATC 3 cut(s) 359, 485, 498
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 5 cut(s) 300, 341, 374, 464, 656
AfiI CCNNNNNNNGG 2 cut(s) 12, 374
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 416, 696
AluBI AGCT 6 cut(s) 49, 172, 428, 433, 533, 560
AluI AGCT 6 cut(s) 49, 172, 428, 433, 533, 560
AlwI GGATC 3 cut(s) 359, 485, 498
ApeKI GCWGC 4 cut(s) 161, 403, 406, 530
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 3 cut(s) 191, 269, 674
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 132, 553
AsuHPI GGTGA 2 cut(s) 83, 461
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 446, 479
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 2 cut(s) 266, 298
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 173, 415, 418, 542
BccI CCATC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 2 cut(s) 132, 553
BfmI CTRYAG 1 cut(s) 682
BfoI RGCGCY 2 cut(s) 270, 675
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 7 cut(s) 162, 324, 404, 407, 531, 596, 675
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 7 cut(s) 163, 325, 405, 408, 532, 597, 676
Bme1390I CCNGG 2 cut(s) 132, 553
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
BmrFI CCNGG 2 cut(s) 132, 553
BmsI GCATC 4 cut(s) 55, 176, 276, 368
BpiI GAAGAC 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 177, 196
BpuMI CCSGG 2 cut(s) 132, 553
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 130, 552
BsaWI WCCGGW 2 cut(s) 301, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 374
BseDI CCNNGG 2 cut(s) 130, 552
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 12, 374
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 4 cut(s) 609, 612, 631, 634
BseXI GCAGC 4 cut(s) 173, 415, 418, 542
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 323
BshNI GGYRCC 2 cut(s) 266, 298
BsiSI CCGG 4 cut(s) 132, 302, 368, 552
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 12, 374
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 3 cut(s) 147, 364, 490
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 6 cut(s) 323, 596, 602, 608, 614, 675
BspCNI CTCAG 1 cut(s) 421
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
BspPI GGATC 3 cut(s) 359, 485, 498
BspT107I GGYRCC 2 cut(s) 266, 298
BspTI CTTAAG 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 654
BssECI CCNNGG 2 cut(s) 130, 552
BssMI GATC 3 cut(s) 147, 364, 490
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 3 cut(s) 166, 170, 271
BstDEI CTNAG 2 cut(s) 359, 429
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 2 cut(s) 270, 675
BstHHI GCGC 3 cut(s) 191, 269, 674
BstKTI GATC 3 cut(s) 150, 367, 493
BstMBI GATC 3 cut(s) 147, 364, 490
BstMWI GCNNNNNNNGC 3 cut(s) 323, 395, 601
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 130, 551
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 173, 415, 418, 542
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 364, 490
BstYI RGATCY 2 cut(s) 364, 490
BsuI GTATCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 166, 170, 271
CfoI GCGC 3 cut(s) 191, 269, 674
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 329
Csp6I GTAC 5 cut(s) 299, 340, 373, 463, 655
CviAII CATG 4 cut(s) 118, 156, 382, 487
CviQI GTAC 5 cut(s) 299, 340, 373, 463, 655
DdeI CTNAG 2 cut(s) 359, 429
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 149, 366, 492
DpnII GATC 3 cut(s) 147, 364, 490
DraIII CACNNNGTG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 383
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 4 cut(s) 121, 159, 385, 490
FaiI YATR 8 cut(s) 119, 157, 293, 383, 471, 488, 653, 684
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 111
FatI CATG 4 cut(s) 117, 155, 381, 486
Fnu4HI GCNGC 7 cut(s) 162, 324, 404, 407, 531, 596, 675
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 7 cut(s) 162, 324, 404, 407, 531, 596, 675
GlaI GCGC 3 cut(s) 190, 268, 673
GluI GCNGC 7 cut(s) 162, 324, 404, 407, 531, 596, 675
HaeII RGCGCY 2 cut(s) 270, 675
HapII CCGG 4 cut(s) 132, 302, 368, 552
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 191, 269, 674
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 4 cut(s) 121, 159, 385, 490
Hin6I GCGC 3 cut(s) 189, 267, 672
HinP1I GCGC 3 cut(s) 189, 267, 672
HinfI GANTC 1 cut(s) 307
HpaII CCGG 4 cut(s) 132, 302, 368, 552
HphI GGTGA 2 cut(s) 83, 461
Hpy166II GTNNAC 5 cut(s) 253, 340, 373, 588, 657
Hpy188III TCNNGA 3 cut(s) 6, 175, 194
Hpy8I GTNNAC 5 cut(s) 253, 340, 373, 588, 657
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 2 cut(s) 276, 351
HpyCH4V TGCA 4 cut(s) 161, 168, 381, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 395, 601
HpyF3I CTNAG 2 cut(s) 359, 429
HpySE526I ACGT 2 cut(s) 276, 351
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 4 cut(s) 121, 159, 385, 490
HspAI GCGC 3 cut(s) 189, 267, 672
KasI GGCGCC 1 cut(s) 266
KflI GGGWCCC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 147, 364, 490
LmnI GCTCC 3 cut(s) 73, 386, 557
LpnPI CCDG 8 cut(s) 19, 145, 178, 248, 283, 315, 381, 565
Lsp1109I GCAGC 4 cut(s) 173, 415, 418, 542
LweI GCATC 4 cut(s) 55, 176, 276, 368
MaeII ACGT 2 cut(s) 276, 351
MalI GATC 3 cut(s) 149, 366, 492
MboI GATC 3 cut(s) 147, 364, 490
MboII GAAGA 9 cut(s) 55, 64, 69, 72, 120, 123, 192, 195, 489
MflI RGATCY 2 cut(s) 364, 490
MluCI AATT 1 cut(s) 73
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 3 cut(s) 435, 459, 721
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 4 cut(s) 132, 302, 368, 552
MspR9I CCNGG 2 cut(s) 132, 553
Mva1269I GAATGC 1 cut(s) 203
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 323, 395, 601
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 2 cut(s) 132, 553
NdeII GATC 3 cut(s) 147, 364, 490
NlaIII CATG 4 cut(s) 121, 159, 385, 490
NlaIV GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 7 cut(s) 163, 325, 405, 408, 532, 597, 676
PleI GAGTC 1 cut(s) 315
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 125
PspN4I GGNNCC 6 cut(s) 126, 127, 136, 268, 300, 492
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PsuI RGATCY 2 cut(s) 364, 490
RsaI GTAC 5 cut(s) 300, 341, 374, 464, 656
RsaNI GTAC 5 cut(s) 299, 340, 373, 463, 655
SaqAI TTAA 3 cut(s) 435, 459, 721
SatI GCNGC 7 cut(s) 162, 324, 404, 407, 531, 596, 675
Sau3AI GATC 3 cut(s) 147, 364, 490
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 2 cut(s) 132, 553
SetI ASST 9 cut(s) 51, 174, 279, 300, 354, 430, 435, 535, 562
SfaNI GCATC 4 cut(s) 55, 176, 276, 368
SfcI CTRYAG 1 cut(s) 682
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 3 cut(s) 175, 192, 458
SmoI CTYRAG 3 cut(s) 175, 192, 458
Sse9I AATT 1 cut(s) 73
SsiI CCGC 6 cut(s) 323, 596, 602, 608, 614, 675
SspDI GGCGCC 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 130, 551
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 2 cut(s) 279, 354
TasI AATT 1 cut(s) 73
TatI WGTACW 2 cut(s) 462, 654
TauI GCSGC 3 cut(s) 326, 598, 677
Tru1I TTAA 3 cut(s) 435, 459, 721
Tru9I TTAA 3 cut(s) 435, 459, 721
TseI GCWGC 4 cut(s) 161, 403, 406, 530
TspGWI ACGGA 2 cut(s) 238, 390
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 289
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.