Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003044

Physical Location & Seq

Genomic Coordinates Forward (+)

3191972 .. 3194560

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCAGAGACAGGGACATCATAACATTGGATGAGATAGGAAAGAAGATCAGGAGGGAAAGTGATCCATCTGGTGATGATCAAATGGGAACCATGAGCACTGCTCGACATAATAATTCCTTTGGTCGTCCTCAAGGGATGATGATGATGAACAACACAACCTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAGATGTGCTGAAGAATGCCCTTTCTCTCCCTACTTCTCCCCTCATGAGCCCCAAAAGTTTTCAGCTGTCCACAAAGTCTTTGGTGCAAGCAATGTTTCCAAGATGCTAATTGAGGTGGCTGAGAACCAAAGAGCTGATGCAGCCAATAGCCTTGTTTATGAGGCAAACCTGAGGCTTAGAGACCCAGTGTATGGTTGCATGGGTGTAATTTCAACCTTGCAGCAACAGATTCAATCTCTCCAACAAGAACTTAATGCAGTAAGGACTGAAATCTTGAGATACCAATATAAAGAGGCCACTAATCACATGGTTTCTTCTACGAATATTATGCACCACCATCCTTCTTTGGTTTCTACTTCTGGGATGGTGTCCATTGCTGGACCACCACAAGCAATTCCAAAGCCGCCGCCACCGCCACCGCCACCGCCACCACCGTCTTCTTCAGTTGTGTTTTCTTCGTCTTCTTCGTCTTCGGCTTCTTCTTTATACAATCCGTCTACAAACACCACAGGCTATAGCTCCATGTCCAGCGATAATATTCCATATTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

254

Amino Acids

27.76

Weight (kDa)

7.69

Isoelectric Point (pI)

75.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40470 AT2G40470
fragaria_vesca	FvH4_3g40200 FvH4_3g40200 FvH4_7g25580 FvH4_7g25580
malus_domestica	MD01G1162900.v1.1 MD03G1059400.v1.1 MD07G1231000.v1.1 MD11G1061600.v1.1
prunus_persica	Prupe.2G261000_v2.0.a1 Prupe.6G043900_v2.0.a1 Prupe.6G043900_v2.0.a1
pyrus_communis	pycom01g17770 pycom03g04770 pycom07g20870 pycom11g05110
rosa_chinensis	RchiOBHm_Chr1g0371641 RchiOBHm_Chr5g0072401
rosa_laevigata	RLG00000026949 RLG00000036297
rosa_multiflora	Rmu_sc0001755.1_g000062
rosa_roxburghii	Rroxscaffold_1G00008840 Rroxscaffold_4G00285510
rosa_rugosa	Rorug01G0365500 Rorug01G0365600 Rorug05G0417700 Rorug05G0417800
rosa_samantha	Rh1AG375600 Rh1BG339100 Rh1CG352200 Rh1DG370100 Rh5AG474300 Rh5BG494400 Rh5CG518400 Rh5DG506500
rosa_wichuraiana	Rw1G033050 Rw5G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	704
AciI	CCGC	5 cut(s)	611, 614, 620, 626, 632
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	237, 633
AdeI	CACNNNGTG	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	12, 398
AgsI	TTSAA	3 cut(s)	166, 420, 440
AluBI	AGCT	4 cut(s)	196, 272, 341, 726
AluI	AGCT	4 cut(s)	196, 272, 341, 726
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	3, 381
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	3 cut(s)	185, 347, 427
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	3 cut(s)	636, 660, 669
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	172, 359, 439
BccI	CCATC	3 cut(s)	76, 552, 565
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	3, 381
BfmI	CTRYAG	1 cut(s)	721
BisI	GCNGC	5 cut(s)	186, 348, 428, 611, 614
BlsI	GCNGC	5 cut(s)	187, 349, 429, 612, 615
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	2 cut(s)	300, 334
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	3 cut(s)	636, 660, 669
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpuEI	CTTGAG	3 cut(s)	117, 220, 502
BsaI	GGTCTC	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 398
Bse1I	ACTGG	1 cut(s)	392
Bse21I	CCTNAGG	1 cut(s)	377
Bse3DI	GCAATG	2 cut(s)	304, 579
BseGI	GGATG	4 cut(s)	37, 144, 544, 576
BseLI	CCNNNNNNNGG	2 cut(s)	12, 398
BseMI	GCAATG	2 cut(s)	304, 579
BseMII	CTCAG	2 cut(s)	318, 368
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	172, 359, 439
BshFI	GGCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	12, 398
BsmAI	GTCTC	2 cut(s)	3, 381
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	101, 258
Bsp143I	GATC	3 cut(s)	48, 64, 79
BspACI	CCGC	5 cut(s)	611, 614, 620, 626, 632
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	319, 369
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	2 cut(s)	304, 579
BsrI	ACTGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	48, 64, 79
Bst4CI	ACNGT	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	327, 377, 383
BstF5I	GGATG	4 cut(s)	37, 144, 544, 576
BstKTI	GATC	3 cut(s)	51, 67, 82
BstMAI	GTCTC	2 cut(s)	3, 381
BstMBI	GATC	3 cut(s)	48, 64, 79
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 619
BstNSI	RCATGY	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	172, 359, 439
BstV2I	GAAGAC	3 cut(s)	636, 660, 669
Bsu36I	CCTNAGG	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	4 cut(s)	37, 144, 544, 576
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 399
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	587
CviAII	CATG	6 cut(s)	94, 189, 251, 406, 514, 730
DdeI	CTNAG	3 cut(s)	327, 377, 383
DpnI	GATC	3 cut(s)	50, 66, 81
DpnII	GATC	3 cut(s)	48, 64, 79
DraIII	CACNNNGTG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	2 cut(s)	237, 633
Eco81I	CCTNAGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	6 cut(s)	97, 192, 254, 409, 517, 733
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	6 cut(s)	93, 188, 250, 405, 513, 729
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	5 cut(s)	186, 348, 428, 611, 614
FokI	GGATG	4 cut(s)	44, 151, 531, 583
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	186, 348, 428, 611, 614
GluI	GCNGC	5 cut(s)	186, 348, 428, 611, 614
HaeIII	GGCC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	97, 192, 254, 409, 517, 733
HinfI	GANTC	1 cut(s)	436
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	277, 705
Hpy188III	TCNNGA	5 cut(s)	6, 52, 199, 251, 481
Hpy8I	GTNNAC	2 cut(s)	277, 705
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	7 cut(s)	188, 293, 347, 405, 427, 464, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 619
HpyF3I	CTNAG	3 cut(s)	327, 377, 383
Hsp92II	CATG	6 cut(s)	97, 192, 254, 409, 517, 733
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	48, 64, 79
LmnI	GCTCC	1 cut(s)	731
LpnPI	CCDG	9 cut(s)	19, 37, 57, 389, 405, 552, 570, 702, 748
Lsp1109I	GCAGC	3 cut(s)	172, 359, 439
LweI	GCATC	2 cut(s)	300, 334
MalI	GATC	3 cut(s)	50, 66, 81
MboI	GATC	3 cut(s)	48, 64, 79
MhlI	GDGCHC	2 cut(s)	101, 258
MluCI	AATT	4 cut(s)	115, 315, 414, 600
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	7 cut(s)	48, 141, 258, 313, 361, 372, 493
MseI	TTAA	2 cut(s)	459, 760
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	347, 619
NdeII	GATC	3 cut(s)	48, 64, 79
NlaIII	CATG	6 cut(s)	97, 192, 254, 409, 517, 733
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	192
PagI	TCATGA	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	187, 349, 429, 612, 615
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	459, 760
SatI	GCNGC	5 cut(s)	186, 348, 428, 611, 614
Sau3AI	GATC	3 cut(s)	48, 64, 79
Sau96I	GGNCC	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	101, 258
SetI	ASST	9 cut(s)	164, 181, 198, 274, 324, 343, 378, 425, 728
SfaNI	GCATC	2 cut(s)	300, 334
SfcI	CTRYAG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	3 cut(s)	132, 199, 481
SmoI	CTYRAG	3 cut(s)	132, 199, 481
Sse9I	AATT	4 cut(s)	115, 315, 414, 600
SsiI	CCGC	5 cut(s)	611, 614, 620, 626, 632
SspI	AATATT	2 cut(s)	532, 745
TaaI	ACNGT	1 cut(s)	642
TaqI	TCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	115, 315, 414, 600
TauI	GCSGC	2 cut(s)	613, 616
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	459, 760
Tru9I	TTAA	2 cut(s)	459, 760
TscAI	CASTG	2 cut(s)	106, 399
TseI	GCWGC	3 cut(s)	185, 347, 427
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	106, 399
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	587
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 511
XmiI	GTMKAC	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.