Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003044

Physical Location & Seq

Genomic Coordinates Reverse (-)

3704619 .. 3705742

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCCTTTTGTTTGTTTCTTTTCATAAACATTGACCTACTGGCTACTGTGCTTCCCAACTTGCCTTGCCTTATAAGCACTCTCTTCCCCCATTCTCAAACTTTCTTTTCTTTCTCCTTCTCTCCTTTCCTCTCTTTGCTCCCAACTTCATTCGGACAATATATAACTAAATATATGTCCATAGGAAGGGAGATCACAACCTTCGATGAGATAGGAAAGAAGATCAGGAGAGAAAATGATGCATCTGTTGTTGAAATGGGAATCATGAGCACTACTCGAATTTCGTCATCATCGTCATCGTCGTTTGGTGTTCCTCATCAAGGGATGACGATGATGAGTACAACAACTTTGAACACAATCACACCTTGTGCTGCGTGTAAGCTCTTGAGAAGAAGATGTGCTGAAGAGTGCCCTTTCTCTCCTTACTTCTCTCCACATGAACCCCAGAAATTTTCAGCTGTTCACAAAGTCTTTGGTGCAAGCAATGTTTCCAAGATGCTATTGGAAGTGGCTGAGAATCAAAGAGCTGATGCAGCCAATAGTCTAGTTTATGAAGCAAATCTGAGGCTGAGAGACCCAGTGTATGGGTGCATGGGTGTAATTTCAGCCTTGCAGCAACAAATTCAATCTCTACAAGCTGAACTCAATGCAGTAAGGACTCAGATATTGAGACACAAATTCAAAGAGGCCACTAGTCCCAGTATCGTTTCTCCTAGGGGTATTATTCACCATGCTGCTTTGGTTTCTAATTCTGGGATGGTGTCCTATGCGGCGCAACCACAAGCGATTTCTCCACTACCGCCGCCGCAACTACCATCAGTATCAGCTCCGTCTTCAGTTGTTTTTTCTTCATCGTCTTCGTCTTCAGCTTCTTCTTTATACAATCCATCCACAAACACGACAGGCTATAGCTCCATCTCAAGCAAAAATGTTCCGTATTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

316

Amino Acids

34.31

Weight (kDa)

8.83

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40470 AT2G40470
fragaria_vesca	FvH4_3g40200 FvH4_3g40200 FvH4_7g25580 FvH4_7g25580
malus_domestica	MD01G1162900.v1.1 MD03G1059400.v1.1 MD07G1231000.v1.1 MD11G1061600.v1.1
prunus_persica	Prupe.2G261000_v2.0.a1 Prupe.6G043900_v2.0.a1 Prupe.6G043900_v2.0.a1
pyrus_communis	pycom01g17770 pycom03g04770 pycom07g20870 pycom11g05110
rosa_chinensis	RchiOBHm_Chr1g0371641 RchiOBHm_Chr5g0072401
rosa_laevigata	RLG00000026949 RLG00000036297
rosa_multiflora	Rmu_sc0001755.1_g000062
rosa_roxburghii	Rroxscaffold_1G00008840 Rroxscaffold_4G00285510
rosa_rugosa	Rorug01G0365500 Rorug01G0365600 Rorug05G0417700 Rorug05G0417800
rosa_samantha	Rh1AG375600 Rh1BG339100 Rh1CG352200 Rh1DG370100 Rh5AG474300 Rh5BG494400 Rh5CG518400 Rh5DG506500
rosa_wichuraiana	Rw1G033050 Rw5G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	584
AciI	CCGC	4 cut(s)	770, 800, 803, 806
AcsI	RAATTY	4 cut(s)	279, 449, 621, 677
AcuI	CTGAAG	3 cut(s)	423, 819, 849
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	3 cut(s)	186, 320, 584
AgsI	TTSAA	4 cut(s)	254, 352, 626, 682
AhlI	ACTAGT	1 cut(s)	692
AluBI	AGCT	7 cut(s)	382, 458, 527, 638, 827, 869, 912
AluI	AGCT	7 cut(s)	382, 458, 527, 638, 827, 869, 912
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	567, 664
AoxI	GGCC	1 cut(s)	687
ApeKI	GCWGC	4 cut(s)	371, 533, 613, 734
ApoI	RAATTY	4 cut(s)	279, 449, 621, 677
AspA2I	CCTAGG	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	719
AvrII	CCTAGG	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	413
BbsI	GAAGAC	3 cut(s)	825, 849, 855
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	358, 545, 625, 721
BccI	CCATC	4 cut(s)	751, 823, 895, 923
BcoDI	GTCTC	2 cut(s)	567, 664
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	3 cut(s)	545, 693, 714
BfmI	CTRYAG	1 cut(s)	907
BisI	GCNGC	7 cut(s)	372, 534, 614, 735, 771, 803, 806
BlnI	CCTAGG	1 cut(s)	713
BlsI	GCNGC	7 cut(s)	373, 535, 615, 736, 772, 804, 807
BmrI	ACTGGG	2 cut(s)	572, 693
BmsI	GCATC	4 cut(s)	229, 251, 486, 520
BmuI	ACTGGG	2 cut(s)	572, 693
BpiI	GAAGAC	3 cut(s)	825, 849, 855
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpuEI	CTTGAG	2 cut(s)	406, 904
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 320, 584
Bse1I	ACTGG	3 cut(s)	45, 578, 699
Bse3DI	GCAATG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	3 cut(s)	330, 762, 887
BseLI	CCNNNNNNNGG	3 cut(s)	186, 320, 584
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	4 cut(s)	504, 554, 560, 674
BseNI	ACTGG	3 cut(s)	45, 578, 699
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	4 cut(s)	358, 545, 625, 721
BshFI	GGCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	3 cut(s)	186, 320, 584
BsmAI	GTCTC	2 cut(s)	567, 664
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	689
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	272, 413
Bsp143I	GATC	2 cut(s)	192, 222
BspACI	CCGC	4 cut(s)	770, 800, 803, 806
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	4 cut(s)	505, 555, 561, 673
BspHI	TCATGA	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	3 cut(s)	45, 578, 699
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	2 cut(s)	192, 222
BssT1I	CCWWGG	1 cut(s)	713
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	89, 399
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	4 cut(s)	513, 563, 569, 660
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	330, 762, 887
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	2 cut(s)	195, 225
BstMAI	GTCTC	2 cut(s)	567, 664
BstMBI	GATC	2 cut(s)	192, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 533
BstSFI	CTRYAG	1 cut(s)	907
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	358, 545, 625, 721
BstV2I	GAAGAC	3 cut(s)	825, 849, 855
BsuRI	GGCC	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	330, 762, 887
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	481
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	775
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	4 cut(s)	265, 437, 592, 731
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	4 cut(s)	513, 563, 569, 660
DpnI	GATC	2 cut(s)	194, 224
DpnII	GATC	2 cut(s)	192, 222
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	89, 399
EarI	CTCTTC	2 cut(s)	89, 399
Eco130I	CCWWGG	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	567
Eco57I	CTGAAG	3 cut(s)	423, 819, 849
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	4 cut(s)	268, 440, 595, 734
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	4 cut(s)	264, 436, 591, 730
Fnu4HI	GCNGC	7 cut(s)	372, 534, 614, 735, 771, 803, 806
FokI	GGATG	3 cut(s)	337, 769, 874
Fsp4HI	GCNGC	7 cut(s)	372, 534, 614, 735, 771, 803, 806
FspBI	CTAG	3 cut(s)	545, 693, 714
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	7 cut(s)	372, 534, 614, 735, 771, 803, 806
HaeIII	GGCC	1 cut(s)	689
HhaI	GCGC	1 cut(s)	775
Hin1II	CATG	4 cut(s)	268, 440, 595, 734
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HinfI	GANTC	3 cut(s)	261, 517, 658
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	3 cut(s)	155, 564, 663
Hpy188III	TCNNGA	3 cut(s)	226, 265, 385
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	127, 180, 211
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	242, 479, 533, 591, 613, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 533
HpyF3I	CTNAG	4 cut(s)	513, 563, 569, 660
Hsp92II	CATG	4 cut(s)	268, 440, 595, 734
HspAI	GCGC	1 cut(s)	773
Kzo9I	GATC	2 cut(s)	192, 222
LmnI	GCTCC	3 cut(s)	144, 832, 917
LpnPI	CCDG	7 cut(s)	26, 211, 458, 591, 712, 738, 888
Lsp1109I	GCAGC	4 cut(s)	358, 545, 625, 721
LweI	GCATC	4 cut(s)	229, 251, 486, 520
MaeI	CTAG	3 cut(s)	545, 693, 714
MalI	GATC	2 cut(s)	194, 224
MboI	GATC	2 cut(s)	192, 222
MhlI	GDGCHC	2 cut(s)	272, 413
MluCI	AATT	6 cut(s)	279, 449, 600, 621, 677, 748
MlyI	GAGTC	1 cut(s)	652
MnlI	CCTC	4 cut(s)	140, 324, 558, 679
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	1 cut(s)	946
MspA1I	CMGCKG	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	75, 533
NdeII	GATC	2 cut(s)	192, 222
NlaIII	CATG	4 cut(s)	268, 440, 595, 734
NsiI	ATGCAT	1 cut(s)	244
PagI	TCATGA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	290, 299
PfeI	GAWTC	2 cut(s)	261, 517
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	7 cut(s)	373, 535, 615, 736, 772, 804, 807
PleI	GAGTC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	652
PsiI	TTATAA	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	946
SatI	GCNGC	7 cut(s)	372, 534, 614, 735, 771, 803, 806
Sau3AI	GATC	2 cut(s)	192, 222
SchI	GAGTC	1 cut(s)	652
SduI	GDGCHC	2 cut(s)	272, 413
SfaNI	GCATC	4 cut(s)	229, 251, 486, 520
SfcI	CTRYAG	1 cut(s)	907
SmlI	CTYRAG	2 cut(s)	385, 919
SmoI	CTYRAG	2 cut(s)	385, 919
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	6 cut(s)	279, 449, 600, 621, 677, 748
SsiI	CCGC	4 cut(s)	770, 800, 803, 806
SspMI	CTAG	3 cut(s)	545, 693, 714
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	204, 277
TasI	AATT	6 cut(s)	279, 449, 600, 621, 677, 748
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	3 cut(s)	773, 805, 808
TfiI	GAWTC	2 cut(s)	261, 517
Tru1I	TTAA	1 cut(s)	946
Tru9I	TTAA	1 cut(s)	946
TscAI	CASTG	1 cut(s)	585
TseI	GCWGC	4 cut(s)	371, 533, 613, 734
TspDTI	ATGAA	5 cut(s)	13, 138, 453, 567, 840
TspGWI	ACGGA	2 cut(s)	819, 924
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	4 cut(s)	279, 449, 621, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	713
XspI	CTAG	3 cut(s)	545, 693, 714
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.