pycom07g20870

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003044
Physical Location & Seq
Reverse (-)
22810878 .. 22812567
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20870.2

Sequence Viewer

Length: 732 bp
ATGGTTGATTCAAAAAGTCAAAACACATTTAAGGAACCACACGTGAGCGAGAGAGAGCTAGCGGTCACAGAGGAGAGAGTTGATGAGATAGGCAAGAAGTTTAAGAGAGAAACTGATGCTTCTTCCCATTATCAAATGGGAAGAAGACACATGTTGGGCCCTCCAGGAACCCTAAACACCATCACTCCTTGTGCTGCCTGTAAACTCCTCAGACGAAGGTGTGCACAGGAATGCCCCTTCTCTCCTTACTTCTCTCCCCACGAACCCCAGAAGTTTGCTTCGGTCCATAAGGTCTTTGGTGCCAGCAACGTCTCGAAGATGCTCATGGAGGTGCCGGAGACTCAAAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGGCTACGAGATCCGGTGTATGGATGCATGGGTGCAATTTCGGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAGCTCAACGCAGTAAGGGATGAGATACTTAAATACAAATACAGGGAAGCCAATCTCCTTCCATCTAATTCTCATCATATGGCTTTGTTCTCTACTTCCGGGGCTGTTTCTGCTGCTTCCTTGCCCCAGACCCCACAGCCAACCCCACCGCCGCCACCGCCACCTCCTATGCCTCCTACTTCATCTTCTTCTTCTATGTACACTAATCAACAAACCAGTGCCGCGGATTATAGCTCCCTTTCAAGTGAAAATGTTTCCTTCTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

244

Amino Acids

26.75

Weight (kDa)

7.68

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 299, 331
AccII CGCG 1 cut(s) 686
AciI CCGC 6 cut(s) 62, 611, 614, 620, 684, 686
AclWI GGATC 1 cut(s) 392
AcvI CACGTG 1 cut(s) 43
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 1 cut(s) 407
AflIII ACRYGT 2 cut(s) 40, 150
AgsI TTSAA 3 cut(s) 12, 449, 705
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 4 cut(s) 58, 461, 466, 696
AluI AGCT 4 cut(s) 58, 461, 466, 696
Alw21I GWGCWC 2 cut(s) 226, 468
Alw26I GTCTC 2 cut(s) 316, 332
Alw44I GTGCAC 1 cut(s) 222
AlwI GGATC 1 cut(s) 392
AoxI GGCC 1 cut(s) 157
ApaI GGGCCC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 194, 356, 575
AspS9I GGNCC 3 cut(s) 157, 158, 283
AsuC2I CCSGG 1 cut(s) 562
AsuNHI GCTAGC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 161, 226
BanI GGYRCC 2 cut(s) 299, 331
BanII GRGCYC 2 cut(s) 161, 468
BbrPI CACGTG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 226, 468
BbvI GCAGC 3 cut(s) 181, 368, 562
BccI CCATC 2 cut(s) 188, 532
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 316, 332
BfaI CTAG 1 cut(s) 59
BisI GCNGC 5 cut(s) 195, 357, 576, 614, 684
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 5 cut(s) 196, 358, 577, 615, 685
Bme1390I CCNGG 2 cut(s) 165, 562
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 157, 158, 283
BmiI GGNNCC 5 cut(s) 36, 159, 169, 301, 333
BmrFI CCNGG 2 cut(s) 165, 562
BmsI GCATC 4 cut(s) 106, 309, 343, 401
BmtI GCTAGC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 561, 684
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 561, 684
BseGI GGATG 2 cut(s) 416, 487
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 2 cut(s) 223, 453
BseNI ACTGG 1 cut(s) 678
BseRI GAGGAG 2 cut(s) 86, 197
BseSI GKGCMC 2 cut(s) 161, 226
BseXI GCAGC 3 cut(s) 181, 368, 562
Bsh1236I CGCG 1 cut(s) 686
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 2 cut(s) 299, 331
BsiHKAI GWGCWC 2 cut(s) 226, 468
BsiSI CCGG 3 cut(s) 335, 401, 561
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 316, 332
BsmBI CGTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 3 cut(s) 161, 226, 468
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 1 cut(s) 397
Bsp1720I GCTNAGC 1 cut(s) 462
BspACI CCGC 6 cut(s) 62, 611, 614, 620, 684, 686
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 222, 454
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 5 cut(s) 36, 159, 169, 301, 333
BspOI GCTAGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 299, 331
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 678
BssECI CCNNGG 2 cut(s) 561, 684
BssMI GATC 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 660
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 60, 304
BstDEI CTNAG 2 cut(s) 209, 462
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 416, 487
BstFNI CGCG 1 cut(s) 686
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 2 cut(s) 316, 332
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 4 cut(s) 356, 428, 572, 619
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 163, 560
BstSLI GKGCMC 2 cut(s) 161, 226
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 3 cut(s) 181, 368, 562
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 2 cut(s) 416, 487
BtsIMutI CAGTG 1 cut(s) 685
Cac8I GCNNGC 2 cut(s) 60, 304
Cfr13I GGNCC 3 cut(s) 157, 158, 283
Cfr42I CCGCGG 1 cut(s) 687
Csp6I GTAC 1 cut(s) 661
CviAII CATG 3 cut(s) 151, 325, 415
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 2 cut(s) 209, 462
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Ecl136II GAGCTC 1 cut(s) 466
Eco24I GRGCYC 2 cut(s) 161, 468
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 466
Eco72I CACGTG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 416
EcoT38I GRGCYC 2 cut(s) 161, 468
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 3 cut(s) 154, 328, 418
FatI CATG 3 cut(s) 150, 324, 414
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 195, 357, 576, 614, 684
FokI GGATG 2 cut(s) 423, 494
FriOI GRGCYC 2 cut(s) 161, 468
Fsp4HI GCNGC 5 cut(s) 195, 357, 576, 614, 684
FspBI CTAG 1 cut(s) 59
GluI GCNGC 5 cut(s) 195, 357, 576, 614, 684
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 159
HapII CCGG 3 cut(s) 335, 401, 561
Hin1II CATG 3 cut(s) 154, 328, 418
HinfI GANTC 2 cut(s) 8, 340
HpaII CCGG 3 cut(s) 335, 401, 561
Hpy166II GTNNAC 3 cut(s) 203, 224, 663
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 3 cut(s) 203, 224, 663
HpyAV CCTTC 4 cut(s) 210, 247, 530, 730
HpyCH4IV ACGT 2 cut(s) 42, 309
HpyCH4V TGCA 5 cut(s) 224, 356, 414, 422, 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 356, 428, 572, 619
HpyF3I CTNAG 2 cut(s) 209, 462
HpySE526I ACGT 2 cut(s) 42, 309
Hsp92II CATG 3 cut(s) 154, 328, 418
KspI CCGCGG 1 cut(s) 687
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 3 cut(s) 181, 368, 562
LweI GCATC 4 cut(s) 106, 309, 343, 401
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 42, 309
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 7 cut(s) 114, 153, 156, 328, 639, 642, 645
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 161, 226, 468
MluCI AATT 2 cut(s) 423, 529
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 7 cut(s) 64, 171, 218, 322, 381, 636, 645
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 4 cut(s) 30, 102, 492, 730
MslI CAYNNNNRTG 2 cut(s) 229, 329
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 3 cut(s) 335, 401, 561
MspR9I CCNGG 2 cut(s) 165, 562
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 4 cut(s) 356, 428, 572, 619
NciI CCSGG 1 cut(s) 562
NdeI CATATG 1 cut(s) 540
NdeII GATC 1 cut(s) 397
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 3 cut(s) 154, 328, 418
NlaIV GGNNCC 5 cut(s) 36, 159, 169, 301, 333
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 5 cut(s) 196, 358, 577, 615, 685
PleI GAGTC 1 cut(s) 334
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 163
PspCI CACGTG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 36, 159, 169, 301, 333
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 3 cut(s) 157, 158, 283
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 2 cut(s) 229, 329
SacI GAGCTC 1 cut(s) 468
SacII CCGCGG 1 cut(s) 687
SaqAI TTAA 4 cut(s) 30, 102, 492, 730
SatI GCNGC 5 cut(s) 195, 357, 576, 614, 684
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 3 cut(s) 157, 158, 283
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 165, 562
SduI GDGCHC 3 cut(s) 161, 226, 468
SfaNI GCATC 4 cut(s) 106, 309, 343, 401
Sfr303I CCGCGG 1 cut(s) 687
SgrBI CCGCGG 1 cut(s) 687
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 229, 329
Sse9I AATT 2 cut(s) 423, 529
SsiI CCGC 6 cut(s) 62, 611, 614, 620, 684, 686
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 2 cut(s) 163, 560
TaiI ACGT 2 cut(s) 45, 312
TaqI TCGA 1 cut(s) 314
TaqII GACCGA 1 cut(s) 271
TasI AATT 2 cut(s) 423, 529
TatI WGTACW 1 cut(s) 660
TauI GCSGC 2 cut(s) 616, 686
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 30, 102, 492, 730
Tru9I TTAA 4 cut(s) 30, 102, 492, 730
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 194, 356, 575
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 390, 633
TspRI CASTG 1 cut(s) 685
VneI GTGCAC 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 283
XceI RCATGY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.