Rw5G044040

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003044
Physical Location & Seq
Reverse (-)
77375614 .. 77376739
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044040.1

Sequence Viewer

Length: 750 bp
ATGTCCAGAGACAGCACGGAGATCATAAGATTGAATGAGATTATAGGAGAGAAGATCATCGGGAGAGAAAGTGACATTCATTTCACATCTGCAGCTGATCAAATGGTAATGATGAGTCGACAGAACAATTCATTTGGTCAACTTCCAGGGATGACGACTTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAAATGTGCTGAAGAATGCCCTTTCTTTCCCTATTTCTCCCCACATGAACCCCACAAATTTTCAGCTGTCCACAAAGTCTTTGGTGCAAGCAATGTCTCCAAGTTGCTAATGGAGGTGTCAGAGAACCAAAGAGCTGATGCTGCAAATAGTCTGGTTTATGAAGCAAACCTGAGATTGAGAGACCCGGTGTACGGATGCGTGGGTGTAATTTCAACCTTGCAGCAAAAAATTCAATCTTTACAAACAGAACTTCATGCTGTTAGGACCGAAATGTTAAGGTGCAAGTATAAAGAAGCACCTAGTCAGATCGTTTCTTCTGGAGATCATATTCATCCTCATCATGCTGCTGCTGCTTTAGTTTCTTCTGGGATGGTGTCTATTGCTGCACCACCGCAATCAATTTTGACATCACCACCGGCTGCTCCTCCATCTTCCGTTGTCTTTTCTTCGTCTTCTTCAACTTCAACTTCTTCTTTATATACACCCTCGACAAACACAACGGGTTTTAGTTCCTTGTCAAGCGACAATCTCCCGTATTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

249

Amino Acids

27.04

Weight (kDa)

6.75

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 59 - 156 1.2e-39 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 118
AciI CCGC 1 cut(s) 596
AcsI RAATTY 2 cut(s) 260, 432
AcuI CTGAAG 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 6 cut(s) 34, 163, 417, 437, 663, 669
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 4 cut(s) 95, 193, 269, 338
AluI AGCT 4 cut(s) 95, 193, 269, 338
Alw26I GTCTC 3 cut(s) 3, 304, 378
ApeKI GCWGC 9 cut(s) 92, 182, 344, 424, 548, 551, 554, 587, 623
ApoI RAATTY 2 cut(s) 260, 432
AspS9I GGNCC 1 cut(s) 468
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 606
AvaII GGWCC 1 cut(s) 468
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 9 cut(s) 104, 169, 331, 436, 535, 538, 541, 574, 610
BccI CCATC 2 cut(s) 568, 640
BciT130I CCWGG 1 cut(s) 147
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 3, 304, 378
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 9 cut(s) 93, 183, 345, 425, 549, 552, 555, 588, 624
BlsI GCNGC 9 cut(s) 94, 184, 346, 426, 550, 553, 556, 589, 625
Bme1390I CCNGG 2 cut(s) 147, 389
Bme18I GGWCC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 468
BmrFI CCNGG 2 cut(s) 147, 389
BmsI GCATC 2 cut(s) 331, 389
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 4 cut(s) 156, 404, 535, 579
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 9 cut(s) 104, 169, 331, 436, 535, 538, 541, 574, 610
BsgI GTGCAG 1 cut(s) 573
BsiSI CCGG 2 cut(s) 389, 620
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 3, 304, 378
BsmI GAATGC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 378
Bsp143I GATC 5 cut(s) 21, 54, 97, 510, 526
BspACI CCGC 1 cut(s) 596
BspCNI CTCAG 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 5 cut(s) 21, 54, 97, 510, 526
Bst2UI CCWGG 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 4 cut(s) 156, 404, 535, 579
BstKTI GATC 5 cut(s) 24, 57, 100, 513, 529
BstMAI GTCTC 3 cut(s) 3, 304, 378
BstMBI GATC 5 cut(s) 21, 54, 97, 510, 526
BstMWI GCNNNNNNNGC 2 cut(s) 344, 554
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 145, 387
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 9 cut(s) 104, 169, 331, 436, 535, 538, 541, 574, 610
BstV2I GAAGAC 1 cut(s) 648
BtsCI GGATG 4 cut(s) 156, 404, 535, 579
Cac8I GCNNGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 394
CviAII CATG 4 cut(s) 186, 248, 458, 545
CviJI RGCY 5 cut(s) 95, 193, 269, 338, 623
CviKI_1 RGCY 5 cut(s) 95, 193, 269, 338, 623
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 1 cut(s) 374
DpnI GATC 5 cut(s) 23, 56, 99, 512, 528
DpnII GATC 5 cut(s) 21, 54, 97, 510, 526
DraIII CACNNNGTG 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 4 cut(s) 189, 251, 461, 548
FatI CATG 4 cut(s) 185, 247, 457, 544
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 9 cut(s) 93, 183, 345, 425, 549, 552, 555, 588, 624
FokI GGATG 4 cut(s) 163, 411, 522, 586
Fsp4HI GCNGC 9 cut(s) 93, 183, 345, 425, 549, 552, 555, 588, 624
FspBI CTAG 1 cut(s) 504
GluI GCNGC 9 cut(s) 93, 183, 345, 425, 549, 552, 555, 588, 624
GsuI CTGGAG 1 cut(s) 543
HapII CCGG 2 cut(s) 389, 620
Hin1II CATG 4 cut(s) 189, 251, 461, 548
HincII GTYRAC 2 cut(s) 119, 140
HindII GTYRAC 2 cut(s) 119, 140
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 389, 620
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 4 cut(s) 119, 140, 274, 394
Hpy188I TCNGA 2 cut(s) 325, 510
Hpy188III TCNNGA 4 cut(s) 6, 61, 196, 522
Hpy8I GTNNAC 4 cut(s) 119, 140, 274, 394
HpyCH4V TGCA 7 cut(s) 92, 185, 290, 347, 424, 486, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 554
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 189, 251, 461, 548
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 5 cut(s) 21, 54, 97, 510, 526
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 9 cut(s) 19, 132, 159, 341, 386, 402, 507, 555, 633
Lsp1109I GCAGC 9 cut(s) 104, 169, 331, 436, 535, 538, 541, 574, 610
LweI GCATC 2 cut(s) 331, 389
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 71
MalI GATC 5 cut(s) 23, 56, 99, 512, 528
MboI GATC 5 cut(s) 21, 54, 97, 510, 526
MluCI AATT 5 cut(s) 127, 260, 411, 432, 603
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 4 cut(s) 310, 549, 639, 700
MseI TTAA 2 cut(s) 479, 748
MspA1I CMGCKG 2 cut(s) 95, 269
MspI CCGG 2 cut(s) 389, 620
MspR9I CCNGG 2 cut(s) 147, 389
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 344, 554
NciI CCSGG 1 cut(s) 389
NdeII GATC 5 cut(s) 21, 54, 97, 510, 526
NlaIII CATG 4 cut(s) 189, 251, 461, 548
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 189
PctI GAATGC 1 cut(s) 224
PkrI GCNGC 9 cut(s) 94, 184, 346, 426, 550, 553, 556, 589, 625
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspPI GGNCC 1 cut(s) 468
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 95, 269
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SalI GTCGAC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 479, 748
SatI GCNGC 9 cut(s) 93, 183, 345, 425, 549, 552, 555, 588, 624
Sau3AI GATC 5 cut(s) 21, 54, 97, 510, 526
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 147, 389
SfaNI GCATC 2 cut(s) 331, 389
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 5 cut(s) 127, 260, 411, 432, 603
SsiI CCGC 1 cut(s) 596
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 145, 387
TaqI TCGA 2 cut(s) 118, 692
TaqII GACCGA 1 cut(s) 485
TasI AATT 5 cut(s) 127, 260, 411, 432, 603
Tru1I TTAA 2 cut(s) 479, 748
Tru9I TTAA 2 cut(s) 479, 748
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 9 cut(s) 92, 182, 344, 424, 548, 551, 554, 587, 623
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 6 cut(s) 68, 120, 264, 378, 446, 524
TspGWI ACGGA 3 cut(s) 32, 411, 628
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 2 cut(s) 260, 432
XceI RCATGY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 2 cut(s) 281, 310
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.