Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003044

Physical Location & Seq

Genomic Coordinates Reverse (-)

3962135 .. 3963089

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCCACAAACAGGGAGATCACAACATTGGATGAGACAGGAAAGACGATCAGGAGAGAAAGTGATGCATCTGTTGATGATCAAATGAGGATCATGAGCACTACTCGAATTTCGTCATCATCGTCATCATCGTTTGGTGTTCCTCATCAAGGGATGATGATGATGAGTACAACAACTTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAGATGTACTGAAGAGTGCCCTTTCTCTCCCTACTTCTCCCCGCATGAACCCCAGAAGTTTTCAGCCGTCCACAAAGTCTTTGGTGCAAGCAATGTTTCCAAGATGCTAATGGAGGTGGCTGAGAATCAAAGAGCTGATGCAGCCAATAGTCTAGTTTATGAGGCAACTCTGAGGCTGAGAGACCCAGTGTCTGGGTGCATGGGTGTAATTTTAGCCTTGCACCAACAAGTTCAATCTCTACAAGCTGAACTCAATGCAGTAAGGACTGAAATATTGAGATACAAATACAAAGAGGCCACTAGTCGCAGTGTCGTTTCTCCTAGGGGTATTATTCACCATTCTGCTTTGGTTTCTAATTCTGGGATGGTGTCCATTGCTGCGCAACCACAAGCGATTTCACCACCGCTGCCCCCGCCACTGCCACCAGCATCAGCTCCGTCTTCAGTTGTCTTTTCTTCGTCATCTTCATCTTCAGCTTCTACTGTATACAATCCATCTACAAACACGACGGGCTATAGCTCCATGTCAAGCGAAAATATTCCGTATTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

259

Amino Acids

27.91

Weight (kDa)

8.29

Isoelectric Point (pI)

73.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40470 AT2G40470
fragaria_vesca	FvH4_3g40200 FvH4_3g40200 FvH4_7g25580 FvH4_7g25580
malus_domestica	MD01G1162900.v1.1 MD03G1059400.v1.1 MD07G1231000.v1.1 MD11G1061600.v1.1
prunus_persica	Prupe.2G261000_v2.0.a1 Prupe.6G043900_v2.0.a1 Prupe.6G043900_v2.0.a1
pyrus_communis	pycom01g17770 pycom03g04770 pycom07g20870 pycom11g05110
rosa_chinensis	RchiOBHm_Chr1g0371641 RchiOBHm_Chr5g0072401
rosa_laevigata	RLG00000026949 RLG00000036297
rosa_multiflora	Rmu_sc0001755.1_g000062
rosa_roxburghii	Rroxscaffold_1G00008840 Rroxscaffold_4G00285510
rosa_rugosa	Rorug01G0365500 Rorug01G0365600 Rorug05G0417700 Rorug05G0417800
rosa_samantha	Rh1AG375600 Rh1BG339100 Rh1CG352200 Rh1DG370100 Rh5AG474300 Rh5BG494400 Rh5CG518400 Rh5DG506500
rosa_wichuraiana	Rw1G033050 Rw5G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	603
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	3 cut(s)	263, 626, 635
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	3 cut(s)	252, 648, 678
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	169, 229
AfiI	CCNNNNNNNGG	3 cut(s)	12, 149, 413
AgsI	TTSAA	2 cut(s)	181, 455
AhdI	GACNNNNNGTC	1 cut(s)	409
AhlI	ACTAGT	1 cut(s)	521
AluBI	AGCT	6 cut(s)	211, 356, 467, 656, 698, 741
AluI	AGCT	6 cut(s)	211, 356, 467, 656, 698, 741
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	29, 396
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	4 cut(s)	200, 362, 599, 628
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	759
AspA2I	CCTAGG	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	548, 612
AvrII	CCTAGG	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	4 cut(s)	187, 374, 586, 615
BccI	CCATC	2 cut(s)	580, 724
BceAI	ACGGC	1 cut(s)	272
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	29, 396
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	374, 522, 543
BfmI	CTRYAG	1 cut(s)	736
BisI	GCNGC	4 cut(s)	201, 363, 600, 629
BlnI	CCTAGG	1 cut(s)	542
BlsI	GCNGC	4 cut(s)	202, 364, 601, 630
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	5 cut(s)	55, 77, 315, 349, 659
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpuEI	CTTGAG	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 149, 413
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	2 cut(s)	319, 594
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	37, 159, 591
BseLI	CCNNNNNNNGG	3 cut(s)	12, 149, 413
BseMI	GCAATG	2 cut(s)	319, 594
BseMII	CTCAG	3 cut(s)	333, 383, 389
BseNI	ACTGG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	187, 374, 586, 615
BshFI	GGCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	12, 149, 413
BsmAI	GTCTC	2 cut(s)	29, 396
BsnI	GGCC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	101, 242
Bsp143I	GATC	4 cut(s)	18, 48, 79, 90
BspACI	CCGC	3 cut(s)	263, 626, 635
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	3 cut(s)	334, 384, 390
BspHI	TCATGA	1 cut(s)	93
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	2 cut(s)	319, 594
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	4 cut(s)	18, 48, 79, 90
BssNAI	GTATAC	1 cut(s)	709
BssT1I	CCWWGG	1 cut(s)	542
Bst1107I	GTATAC	1 cut(s)	709
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	342, 392, 398
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	37, 159, 591
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	4 cut(s)	21, 51, 82, 93
BstMAI	GTCTC	2 cut(s)	29, 396
BstMBI	GATC	4 cut(s)	18, 48, 79, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 634
BstNSI	RCATGY	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	187, 374, 586, 615
BstV2I	GAAGAC	1 cut(s)	654
BstZ17I	GTATAC	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	37, 159, 591
BtsI	GCAGTG	2 cut(s)	535, 638
BtsIMutI	CAGTG	3 cut(s)	414, 535, 638
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	604
Csp6I	GTAC	2 cut(s)	168, 228
CviAII	CATG	5 cut(s)	94, 204, 266, 421, 745
CviQI	GTAC	2 cut(s)	168, 228
DdeI	CTNAG	3 cut(s)	342, 392, 398
DpnI	GATC	4 cut(s)	20, 50, 81, 92
DpnII	GATC	4 cut(s)	18, 48, 79, 90
DraIII	CACNNNGTG	1 cut(s)	197
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	396
Eco57I	CTGAAG	3 cut(s)	252, 648, 678
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	97, 207, 269, 424, 748
FaiI	YATR	8 cut(s)	95, 205, 267, 381, 422, 709, 738, 746
FatI	CATG	5 cut(s)	93, 203, 265, 420, 744
FauI	CCCGC	2 cut(s)	270, 642
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	4 cut(s)	201, 363, 600, 629
FokI	GGATG	3 cut(s)	44, 166, 598
Fsp4HI	GCNGC	4 cut(s)	201, 363, 600, 629
FspBI	CTAG	3 cut(s)	374, 522, 543
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	201, 363, 600, 629
HaeIII	GGCC	1 cut(s)	518
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	97, 207, 269, 424, 748
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	548, 612
Hpy166II	GTNNAC	3 cut(s)	6, 292, 709
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	3 cut(s)	52, 94, 214
Hpy8I	GTNNAC	3 cut(s)	6, 292, 709
Hpy99I	CGWCG	1 cut(s)	733
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	7 cut(s)	68, 203, 308, 362, 420, 442, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 634
HpyF3I	CTNAG	3 cut(s)	342, 392, 398
Hsp92II	CATG	5 cut(s)	97, 207, 269, 424, 748
HspAI	GCGC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	18, 48, 79, 90
LmnI	GCTCC	2 cut(s)	661, 746
LpnPI	CCDG	7 cut(s)	24, 37, 287, 399, 420, 567, 660
Lsp1109I	GCAGC	4 cut(s)	187, 374, 586, 615
LweI	GCATC	5 cut(s)	55, 77, 315, 349, 659
MaeI	CTAG	3 cut(s)	374, 522, 543
MalI	GATC	4 cut(s)	20, 50, 81, 92
MboI	GATC	4 cut(s)	18, 48, 79, 90
MboII	GAAGA	7 cut(s)	231, 234, 245, 654, 669, 678, 684
MhlI	GDGCHC	2 cut(s)	101, 242
MluCI	AATT	3 cut(s)	108, 429, 577
MnlI	CCTC	6 cut(s)	81, 153, 328, 376, 387, 508
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	362, 634
NdeII	GATC	4 cut(s)	18, 48, 79, 90
NlaIII	CATG	5 cut(s)	97, 207, 269, 424, 748
NsbI	TGCGCA	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	207
PagI	TCATGA	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 128
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	202, 364, 601, 630
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	169, 229
RsaNI	GTAC	2 cut(s)	168, 228
SaqAI	TTAA	1 cut(s)	775
SatI	GCNGC	4 cut(s)	201, 363, 600, 629
Sau3AI	GATC	4 cut(s)	18, 48, 79, 90
SduI	GDGCHC	2 cut(s)	101, 242
SetI	ASST	8 cut(s)	196, 213, 339, 358, 469, 658, 700, 743
SfaNI	GCATC	5 cut(s)	55, 77, 315, 349, 659
SfcI	CTRYAG	1 cut(s)	736
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	3 cut(s)	108, 429, 577
SsiI	CCGC	3 cut(s)	263, 626, 635
SspI	AATATT	2 cut(s)	495, 760
SspMI	CTAG	3 cut(s)	374, 522, 543
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	2 cut(s)	106, 771
TasI	AATT	3 cut(s)	108, 429, 577
TatI	WGTACW	2 cut(s)	167, 227
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	775
Tru9I	TTAA	1 cut(s)	775
TscAI	CASTG	3 cut(s)	414, 535, 645
TseI	GCWGC	4 cut(s)	200, 362, 599, 628
TspDTI	ATGAA	2 cut(s)	282, 678
TspGWI	ACGGA	2 cut(s)	648, 753
TspRI	CASTG	3 cut(s)	414, 535, 645
Van91I	CCANNNNNTGG	1 cut(s)	413
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	2 cut(s)	299, 328
XmaJI	CCTAGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	3 cut(s)	374, 522, 543
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.