Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003044

Physical Location & Seq

Genomic Coordinates Forward (+)

48065370 .. 48087743

Gene Structure 22374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0365600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGGGGGAGGAGGAGGAGGAGAGGGTCATGCAATAGGGATTGACTTAGGGACAACCTATTCATGCGTAGCAGTATGGGAGCACGATCATGTAGAAATCATAGTGAATGATCAGGGAAACAGGACAACTCCATCCTATGTTGCCTTCACCGACTCAGAGCTATTCGTAGGCGACGCTGCATTTAACCAGATCATTAAAAATCCCACAAACTCAATCTTTGATGCAAAGCGTTTAATAGGCAGGAGATATAGTGATGCCTCAGTTCAAAATGATATTAAACTCTGGCCATTCAAGGTTATTGAAGGTCCTGCTGAGAAGCCCATGATTGTAGTTACCCACAAGGGCGAAGAGAAACAATTTGCTGCTGAACAAATCTCATCTATGGTTCTTGAAAAGATGCGGGAAATTGCTGAGGCCTATCTTGGTTCACCTGTGAAAAATGCAGTTATCACCGTCCCTGCCTACTTCAATAATTCACAGCGTCAGGCTACAAATGATGCTGCAGTCACTGCTGGCCTAAATGTGATGCGTATCATCAACGAACCAACCGCAGCAGCCATTGCTTATGGACTTGACAGAAAGGGCGGCTGGTATAGCAAGAGAAATGTTATGATATTTGATTTCGGCGGTGGTACACTAGATGTGTCATTGCTTACAATAGGTGATGGTATATTCGAAGTGAAGGCTACAGCTGGAGACACTCACCTTGGAGGTGAAGATCTTGATAACAGAATGGTGAGCTATTGTGTTGAGGAATTCAAGAAAAAGCACAATCTAGACATCACTGGAAACTGTAGAGCTCTTAGGAGGTTAAGAAATGCATGTGAGAAGGCAAAGAGGAGACTTTCATTTGCTTCCATAGTTGACATTGAAATTGATTGTTTGGATTTCTATACAAGTATCACTAGAGCCAAGTTTGAACAACTCAACAAAGACTTGTTCAACAAGTGCATGGACCCTGTGAGAAAGTGTTTAAGCGATGCTACAATGAAGATAAGCAATGTCCATGATGTTGTTCTTGCGGGTGGCTCTTCTAGAATTCCTAAAGTGCAAGAACTATTAAAAGATGTCTTCAAAGGGAAGGAGCTGTGCAAGGGAGTTAATCCAGATGAGGCAATCGCCTATGGAGCTGCGGTTCAAGCTGCAGTTTTGAAAGGCCATCAAGATCAGAAACTTCAAGACTTCGCTCTCTTGGATGTCACCCCTCTGTCACTCGGGTTGGAGAGTCGCACACTTGATACGCTTGAGAAATACATGAATGTTCTGATTCCAAAGAACACTAGAATACCTGTGATGAAGAGCAAAATTATAACTACTATATATGACAACCAAGAGTCGGTCGTATTCCCCATATATGAGGGTGAGTGTAGAATAGTCAAAGAAAATTACTTTGTGGGCGAAGTTAGCCTCTGCAACATTCCTCTGGCTCCCAAGAATGTTCCTAAGTTCAATCTTTGCTTTAATATTGATGCAAGTGGCATCCTGCGTGTCTCAGCAGAGGACATGACTACTGGACAGAGGAAAGAGATTACGATCAACAGTGACAGAAGAAATTTGGGAATTGAGAACGAGAGAATTGCTGACATCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

530

Amino Acids

58.56

Weight (kDa)

5.9

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	11 - 517	1.3e-198	Hsp70 protein
MreB_Mbl	PF06723	129 - 379	5.4e-15	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40470 AT2G40470
fragaria_vesca	FvH4_3g40200 FvH4_3g40200 FvH4_7g25580 FvH4_7g25580
malus_domestica	MD01G1162900.v1.1 MD03G1059400.v1.1 MD07G1231000.v1.1 MD11G1061600.v1.1
prunus_persica	Prupe.2G261000_v2.0.a1 Prupe.6G043900_v2.0.a1 Prupe.6G043900_v2.0.a1
pyrus_communis	pycom01g17770 pycom03g04770 pycom07g20870 pycom11g05110
rosa_chinensis	RchiOBHm_Chr1g0371641 RchiOBHm_Chr5g0072401
rosa_laevigata	RLG00000026949 RLG00000036297
rosa_multiflora	Rmu_sc0001755.1_g000062
rosa_roxburghii	Rroxscaffold_1G00008840 Rroxscaffold_4G00285510
rosa_rugosa	Rorug01G0365500 Rorug01G0365600 Rorug05G0417700 Rorug05G0417800
rosa_samantha	Rh1AG375600 Rh1BG339100 Rh1CG352200 Rh1DG370100 Rh5AG474300 Rh5BG494400 Rh5CG518400 Rh5DG506500
rosa_wichuraiana	Rw1G033050 Rw5G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1310
AciI	CCGC	6 cut(s)	400, 549, 585, 627, 1022, 1133
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	3 cut(s)	755, 1038, 1552
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	1 cut(s)	1336
AloI	GAACNNNNNNTCC	2 cut(s)	1119, 1151
AluBI	AGCT	7 cut(s)	160, 692, 741, 800, 1087, 1130, 1142
AluI	AGCT	7 cut(s)	160, 692, 741, 800, 1087, 1130, 1142
Alw21I	GWGCWC	2 cut(s)	84, 802
Alw26I	GTCTC	3 cut(s)	690, 835, 1495
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	1214
AoxI	GGCC	4 cut(s)	284, 414, 514, 1156
ApeKI	GCWGC	7 cut(s)	176, 362, 500, 551, 554, 1130, 1142
ApoI	RAATTY	3 cut(s)	755, 1038, 1552
AspS9I	GGNCC	2 cut(s)	305, 955
AsuHPI	GGTGA	9 cut(s)	139, 420, 442, 674, 695, 725, 748, 1192, 1373
AsuII	TTCGAA	1 cut(s)	675
AvaI	CYCGRG	1 cut(s)	1214
AvaII	GGWCC	2 cut(s)	305, 955
BalI	TGGCCA	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	1063
Bbv12I	GWGCWC	2 cut(s)	84, 802
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	7 cut(s)	163, 349, 487, 563, 566, 1117, 1129
BccI	CCATC	3 cut(s)	139, 659, 1167
BcgI	CGANNNNNNTGC	2 cut(s)	1559, 1593
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	690, 835, 1495
BfaI	CTAG	6 cut(s)	638, 776, 906, 1035, 1281, 1591
BfmI	CTRYAG	4 cut(s)	501, 687, 793, 1143
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	8 cut(s)	177, 363, 501, 552, 555, 586, 1131, 1143
BlsI	GCNGC	8 cut(s)	178, 364, 502, 553, 556, 587, 1132, 1144
Bme18I	GGWCC	2 cut(s)	305, 955
BmeT110I	CYCGRG	1 cut(s)	1214
BmgT120I	GGNCC	2 cut(s)	305, 955
BmiI	GGNNCC	2 cut(s)	957, 1428
BmsI	GCATC	8 cut(s)	211, 244, 387, 487, 516, 970, 1459, 1488
BpiI	GAAGAC	1 cut(s)	1063
BpmI	CTGGAG	1 cut(s)	714
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	1265
BsaBI	GATNNNNATC	2 cut(s)	530, 1532
BsaJI	CCNNGG	1 cut(s)	706
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 1119, 1149
Bsc4I	CCNNNNNNNGG	1 cut(s)	1336
Bse1I	ACTGG	2 cut(s)	790, 1516
Bse3DI	GCAATG	3 cut(s)	558, 647, 1006
Bse8I	GATNNNNATC	2 cut(s)	530, 1532
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	3 cut(s)	131, 1201, 1479
BseJI	GATNNNNATC	2 cut(s)	530, 1532
BseLI	CCNNNNNNNGG	1 cut(s)	1336
BseMI	GCAATG	3 cut(s)	558, 647, 1006
BseMII	CTCAG	5 cut(s)	168, 273, 303, 402, 1506
BseNI	ACTGG	2 cut(s)	790, 1516
BseRI	GAGGAG	5 cut(s)	24, 27, 30, 33, 853
BseXI	GCAGC	7 cut(s)	163, 349, 487, 563, 566, 1117, 1129
Bsh1285I	CGRYCG	1 cut(s)	1341
BshFI	GGCC	4 cut(s)	286, 416, 516, 1158
BsiEI	CGRYCG	1 cut(s)	1341
BsiHKAI	GWGCWC	2 cut(s)	84, 802
BsiHKCI	CYCGRG	1 cut(s)	1214
BslFI	GGGAC	2 cut(s)	64, 440
BslI	CCNNNNNNNGG	1 cut(s)	1336
BsmAI	GTCTC	3 cut(s)	690, 835, 1495
BsmFI	GGGAC	2 cut(s)	64, 440
BsnI	GGCC	4 cut(s)	286, 416, 516, 1158
BsoBI	CYCGRG	1 cut(s)	1214
Bsp119I	TTCGAA	1 cut(s)	675
Bsp1286I	GDGCHC	2 cut(s)	84, 802
Bsp143I	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
BspACI	CCGC	6 cut(s)	400, 549, 585, 627, 1022, 1133
BspANI	GGCC	4 cut(s)	286, 416, 516, 1158
BspCNI	CTCAG	5 cut(s)	167, 272, 304, 403, 1505
BspLI	GGNNCC	2 cut(s)	957, 1428
BspMAI	CTGCAG	2 cut(s)	505, 1147
BspQI	GCTCTTC	2 cut(s)	1036, 1292
BspT104I	TTCGAA	1 cut(s)	675
BsrDI	GCAATG	3 cut(s)	558, 647, 1006
BsrI	ACTGG	2 cut(s)	790, 1516
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
BssT1I	CCWWGG	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	454, 794, 1541
Bst6I	CTCTTC	3 cut(s)	342, 1036, 1292
BstAPI	GCANNNNNTGC	2 cut(s)	509, 560
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	8 cut(s)	46, 154, 259, 312, 411, 803, 1443, 1492
BstF5I	GGATG	3 cut(s)	131, 1201, 1479
BstKTI	GATC	6 cut(s)	88, 112, 192, 721, 1168, 1536
BstMAI	GTCTC	3 cut(s)	690, 835, 1495
BstMBI	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
BstMCI	CGRYCG	1 cut(s)	1341
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 560, 594, 1127, 1139, 1404
BstNSI	RCATGY	1 cut(s)	825
BstSFI	CTRYAG	4 cut(s)	501, 687, 793, 1143
BstV1I	GCAGC	7 cut(s)	163, 349, 487, 563, 566, 1117, 1129
BstV2I	GAAGAC	1 cut(s)	1063
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	286, 416, 516, 1158
BtgZI	GCGATG	1 cut(s)	993
BtsCI	GGATG	3 cut(s)	131, 1201, 1479
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	3 cut(s)	507, 783, 1546
Cac8I	GCNNGC	1 cut(s)	514
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	305, 955
CseI	GACGC	2 cut(s)	182, 470
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	9 cut(s)	29, 63, 89, 322, 822, 952, 1007, 1255, 1504
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	8 cut(s)	46, 154, 259, 312, 411, 803, 1443, 1492
DpnI	GATC	6 cut(s)	87, 111, 191, 720, 1167, 1535
DpnII	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	3 cut(s)	342, 1036, 1292
EarI	CTCTTC	3 cut(s)	342, 1036, 1292
Ecl136II	GAGCTC	1 cut(s)	800
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	802
Eco47I	GGWCC	2 cut(s)	305, 955
Eco53kI	GAGCTC	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	1214
EcoICRI	GAGCTC	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	2 cut(s)	755, 1038
EcoT14I	CCWWGG	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	9 cut(s)	32, 66, 92, 325, 825, 955, 1010, 1258, 1507
FaqI	GGGAC	2 cut(s)	64, 440
FatI	CATG	9 cut(s)	28, 62, 88, 321, 821, 951, 1006, 1254, 1503
FauI	CCCGC	2 cut(s)	393, 1015
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	8 cut(s)	177, 363, 501, 552, 555, 586, 1131, 1143
FokI	GGATG	3 cut(s)	118, 1208, 1466
FriOI	GRGCYC	1 cut(s)	802
Fsp4HI	GCNGC	8 cut(s)	177, 363, 501, 552, 555, 586, 1131, 1143
FspBI	CTAG	6 cut(s)	638, 776, 906, 1035, 1281, 1591
GluI	GCNGC	8 cut(s)	177, 363, 501, 552, 555, 586, 1131, 1143
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	4 cut(s)	286, 416, 516, 1158
HgaI	GACGC	2 cut(s)	182, 470
Hin1II	CATG	9 cut(s)	32, 66, 92, 325, 825, 955, 1010, 1258, 1507
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	4 cut(s)	152, 1225, 1267, 1334
HphI	GGTGA	9 cut(s)	139, 420, 442, 674, 695, 725, 748, 1192, 1373
Hpy166II	GTNNAC	3 cut(s)	428, 635, 865
Hpy188I	TCNGA	3 cut(s)	157, 1170, 1266
Hpy188III	TCNNGA	8 cut(s)	389, 722, 760, 776, 1035, 1106, 1163, 1178
Hpy8I	GTNNAC	3 cut(s)	428, 635, 865
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	5 cut(s)	154, 296, 676, 823, 1075
HpyCH4III	ACNGT	3 cut(s)	454, 794, 1541
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 560, 594, 1127, 1139, 1404
HpyF3I	CTNAG	8 cut(s)	46, 154, 259, 312, 411, 803, 1443, 1492
Hsp92II	CATG	9 cut(s)	32, 66, 92, 325, 825, 955, 1010, 1258, 1507
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
LguI	GCTCTTC	2 cut(s)	1036, 1292
LmnI	GCTCC	4 cut(s)	79, 1084, 1127, 1432
Lsp1109I	GCAGC	7 cut(s)	163, 349, 487, 563, 566, 1117, 1129
LweI	GCATC	8 cut(s)	211, 244, 387, 487, 516, 970, 1459, 1488
MaeI	CTAG	6 cut(s)	638, 776, 906, 1035, 1281, 1591
MaeIII	GTNAC	5 cut(s)	331, 505, 1198, 1209, 1541
MalI	GATC	6 cut(s)	87, 111, 191, 720, 1167, 1535
MboI	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
MboII	GAAGA	7 cut(s)	359, 728, 1003, 1023, 1063, 1309, 1560
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	84, 802
MlsI	TGGCCA	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	3 cut(s)	146, 1234, 1343
MmeI	TCCRAC	1 cut(s)	1200
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	823
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	9 cut(s)	183, 195, 233, 276, 812, 974, 1061, 1101, 1461
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	692
MwoI	GCNNNNNNNGC	6 cut(s)	509, 560, 594, 1127, 1139, 1404
NdeII	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
NlaIII	CATG	9 cut(s)	32, 66, 92, 325, 825, 955, 1010, 1258, 1507
NlaIV	GGNNCC	2 cut(s)	957, 1428
NmuCI	GTSAC	4 cut(s)	505, 1198, 1209, 1541
NsiI	ATGCAT	1 cut(s)	823
NspI	RCATGY	1 cut(s)	825
NspV	TTCGAA	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	1036, 1292
PfeI	GAWTC	1 cut(s)	1267
PkrI	GCNGC	8 cut(s)	178, 364, 502, 553, 556, 587, 1132, 1144
PleI	GAGTC	3 cut(s)	146, 1233, 1342
PpsI	GAGTC	3 cut(s)	146, 1233, 1342
PpuMI	RGGWCCY	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	1310
Psp124BI	GAGCTC	1 cut(s)	802
Psp5II	RGGWCCY	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	957, 1428
PspPI	GGNCC	2 cut(s)	305, 955
PspPPI	RGGWCCY	1 cut(s)	305
PstI	CTGCAG	2 cut(s)	505, 1147
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	802
SapI	GCTCTTC	2 cut(s)	1036, 1292
SaqAI	TTAA	9 cut(s)	183, 195, 233, 276, 812, 974, 1061, 1101, 1461
SatI	GCNGC	8 cut(s)	177, 363, 501, 552, 555, 586, 1131, 1143
Sau3AI	GATC	6 cut(s)	85, 109, 189, 718, 1165, 1533
Sau96I	GGNCC	2 cut(s)	305, 955
SchI	GAGTC	3 cut(s)	146, 1234, 1343
SduI	GDGCHC	2 cut(s)	84, 802
SfaNI	GCATC	8 cut(s)	211, 244, 387, 487, 516, 970, 1459, 1488
SfcI	CTRYAG	4 cut(s)	501, 687, 793, 1143
SfuI	TTCGAA	1 cut(s)	675
SinI	GGWCC	2 cut(s)	305, 955
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	6 cut(s)	400, 549, 585, 627, 1022, 1133
SspI	AATATT	1 cut(s)	1465
SspMI	CTAG	6 cut(s)	638, 776, 906, 1035, 1281, 1591
SstI	GAGCTC	1 cut(s)	802
StuI	AGGCCT	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	3 cut(s)	454, 794, 1541
TaqI	TCGA	2 cut(s)	675, 1587
TaqII	GACCGA	1 cut(s)	1327
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	1 cut(s)	1267
Tru1I	TTAA	9 cut(s)	183, 195, 233, 276, 812, 974, 1061, 1101, 1461
Tru9I	TTAA	9 cut(s)	183, 195, 233, 276, 812, 974, 1061, 1101, 1461
TscAI	CASTG	3 cut(s)	514, 790, 1546
TseFI	GTSAC	4 cut(s)	505, 1198, 1209, 1541
TseI	GCWGC	7 cut(s)	176, 362, 500, 551, 554, 1130, 1142
Tsp45I	GTSAC	4 cut(s)	505, 1198, 1209, 1541
TspDTI	ATGAA	5 cut(s)	51, 837, 1004, 1271, 1310
TspRI	CASTG	3 cut(s)	514, 790, 1546
VpaK11BI	GGWCC	2 cut(s)	305, 955
XapI	RAATTY	3 cut(s)	755, 1038, 1552
XbaI	TCTAGA	2 cut(s)	775, 1034
XceI	RCATGY	1 cut(s)	825
XspI	CTAG	6 cut(s)	638, 776, 906, 1035, 1281, 1591
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.