FvH4_7g25580

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003044
Physical Location & Seq
Reverse (-)
19505943 .. 19507526
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25580.t2

Sequence Viewer

Length: 612 bp
ATGGGAAGAAGACACATGTTGGGTCCTCCCGGAACCCTAAACACGATCACGCCTTGTGCAGCCTGCAAGCTCTTGAGAAGAAGATGCGCACAAGAATGCCCCTTCTCTCCCTACTTCTCTCCCCACGAACCCCAGAAGTTCGCCTCCGTCCACAAAGTGTTCGGCGCCAGCAACGTTTCCAAGATGCTTATGGAGGTGCCGGAGAGCCAAAGAGCAGACGCAGCTAATAGTCTTGTGTATGAGGCCAACGTGAGGCTAAGAGATCCGGTGTACGGTTGCATGGGAGCGATTTCGGCTTTGCAGCAGCAAGTTCAGTCGTTACAAGCGGAGCTCAATACTGTGAGGGGTGAAATACTCAAGTTCAAATACAGGGAAGCAAATCTAATGGATCCTTCATCTCATCATCATCAAGTGGCAGCTTTGTTCTCTACTACTACTACTTCCGGAGGAGCTGTTTCGGTTGCTTCCCTCCCACCGTCCACACAGCCACCTCCGCCGCCGCCGCCTCCTCCTCTCCCTCCTACTTCCTCCTCCTCATCTATGTACACTCAACCCAACAGCGCCACCGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTATTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

204

Amino Acids

21.92

Weight (kDa)

8.63

Isoelectric Point (pI)

67.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 52 - 148 6.4e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 88
AccB1I GGYRCC 2 cut(s) 164, 196
AccIII TCCGGA 1 cut(s) 443
AciI CCGC 5 cut(s) 326, 494, 497, 500, 503
AclI AACGTT 1 cut(s) 174
AclWI GGATC 3 cut(s) 257, 383, 396
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 272, 545
AfiI CCNNNNNNNGG 2 cut(s) 252, 272
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 364, 585
AluBI AGCT 5 cut(s) 70, 224, 331, 419, 452
AluI AGCT 5 cut(s) 70, 224, 331, 419, 452
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 3 cut(s) 257, 383, 396
Aor13HI TCCGGA 1 cut(s) 443
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 5 cut(s) 59, 221, 301, 304, 416
AspLEI GCGC 3 cut(s) 89, 167, 563
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 2 cut(s) 164, 196
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 71, 233, 313, 316, 428
BcnI CCSGG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 571
BfoI RGCGCY 2 cut(s) 168, 564
BisI GCNGC 8 cut(s) 60, 222, 302, 305, 417, 497, 500, 503
BlsI GCNGC 8 cut(s) 61, 223, 303, 306, 418, 498, 501, 504
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 5 cut(s) 24, 34, 166, 198, 390
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 74, 174
BpiI GAAGAC 1 cut(s) 16
BpuEI CTTGAG 2 cut(s) 94, 341
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 165
BsaWI WCCGGW 2 cut(s) 265, 443
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 272
BseAI TCCGGA 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 252, 272
BseRI GAGGAG 5 cut(s) 462, 498, 501, 520, 523
BseXI GCAGC 5 cut(s) 71, 233, 313, 316, 428
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 2 cut(s) 164, 196
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 4 cut(s) 30, 200, 266, 444
BslI CCNNNNNNNGG 2 cut(s) 252, 272
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 443
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 45, 262, 388
BspACI CCGC 5 cut(s) 326, 494, 497, 500, 503
BspANI GGCC 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 443
BspLI GGNNCC 5 cut(s) 24, 34, 166, 198, 390
BspPI GGATC 3 cut(s) 257, 383, 396
BspT107I GGYRCC 2 cut(s) 164, 196
BsrGI TGTACA 1 cut(s) 543
BssMI GATC 3 cut(s) 45, 262, 388
BssNI GRCGYC 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 275, 340, 477
BstACI GRCGYC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 64, 68, 169
BstDEI CTNAG 1 cut(s) 257
BstH2I RGCGCY 2 cut(s) 168, 564
BstHHI GCGC 3 cut(s) 89, 167, 563
BstKTI GATC 3 cut(s) 48, 265, 391
BstMBI GATC 3 cut(s) 45, 262, 388
BstMWI GCNNNNNNNGC 4 cut(s) 221, 293, 493, 502
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 571
BstV1I GCAGC 5 cut(s) 71, 233, 313, 316, 428
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 262, 388
BstYI RGATCY 2 cut(s) 262, 388
BsuRI GGCC 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 64, 68, 169
CfoI GCGC 3 cut(s) 89, 167, 563
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 271, 544
CviAII CATG 2 cut(s) 16, 280
CviQI GTAC 2 cut(s) 271, 544
DdeI CTNAG 1 cut(s) 257
DinI GGCGCC 1 cut(s) 166
DpnI GATC 3 cut(s) 47, 264, 390
DpnII GATC 3 cut(s) 45, 262, 388
DraIII CACNNNGTG 1 cut(s) 157
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaeI CATG 2 cut(s) 19, 283
FaiI YATR 6 cut(s) 17, 191, 240, 281, 542, 573
FatI CATG 2 cut(s) 15, 279
Fnu4HI GCNGC 8 cut(s) 60, 222, 302, 305, 417, 497, 500, 503
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 8 cut(s) 60, 222, 302, 305, 417, 497, 500, 503
FspAI RTGCGCAY 1 cut(s) 88
FspI TGCGCA 1 cut(s) 88
GlaI GCGC 3 cut(s) 88, 166, 562
GluI GCNGC 8 cut(s) 60, 222, 302, 305, 417, 497, 500, 503
HaeII RGCGCY 2 cut(s) 168, 564
HaeIII GGCC 1 cut(s) 245
HapII CCGG 4 cut(s) 30, 200, 266, 444
HgaI GACGC 1 cut(s) 227
HhaI GCGC 3 cut(s) 89, 167, 563
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 19, 283
Hin6I GCGC 3 cut(s) 87, 165, 561
HinP1I GCGC 3 cut(s) 87, 165, 561
HpaII CCGG 4 cut(s) 30, 200, 266, 444
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 4 cut(s) 151, 271, 480, 546
Hpy188III TCNNGA 2 cut(s) 73, 444
Hpy8I GTNNAC 4 cut(s) 151, 271, 480, 546
HpyAV CCTTC 2 cut(s) 112, 402
HpyCH4III ACNGT 3 cut(s) 275, 340, 477
HpyCH4IV ACGT 2 cut(s) 174, 249
HpyCH4V TGCA 4 cut(s) 59, 66, 279, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 293, 493, 502
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 2 cut(s) 174, 249
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 19, 283
HspAI GCGC 3 cut(s) 87, 165, 561
KasI GGCGCC 1 cut(s) 164
Kpn2I TCCGGA 1 cut(s) 443
Kzo9I GATC 3 cut(s) 45, 262, 388
LmnI GCTCC 3 cut(s) 284, 328, 449
LpnPI CCDG 8 cut(s) 43, 76, 146, 181, 213, 279, 355, 457
Lsp1109I GCAGC 5 cut(s) 71, 233, 313, 316, 428
LweI GCATC 2 cut(s) 74, 174
MaeII ACGT 2 cut(s) 174, 249
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 47, 264, 390
MboI GATC 3 cut(s) 45, 262, 388
MboII GAAGA 4 cut(s) 18, 21, 90, 93
MflI RGATCY 2 cut(s) 262, 388
MhlI GDGCHC 1 cut(s) 333
Mly113I GGCGCC 1 cut(s) 165
MroI TCCGGA 1 cut(s) 443
MseI TTAA 1 cut(s) 610
MslI CAYNNNNRTG 1 cut(s) 94
MspI CCGG 4 cut(s) 30, 200, 266, 444
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 221, 293, 493, 502
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 30
NdeII GATC 3 cut(s) 45, 262, 388
NlaIII CATG 2 cut(s) 19, 283
NlaIV GGNNCC 5 cut(s) 24, 34, 166, 198, 390
NsbI TGCGCA 1 cut(s) 88
NspI RCATGY 1 cut(s) 19
PciI ACATGT 1 cut(s) 15
PctI GAATGC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 8 cut(s) 61, 223, 303, 306, 418, 498, 501, 504
PluTI GGCGCC 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 23
PscI ACATGT 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 23
PspN4I GGNNCC 5 cut(s) 24, 34, 166, 198, 390
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
PsuI RGATCY 2 cut(s) 262, 388
RsaI GTAC 2 cut(s) 272, 545
RsaNI GTAC 2 cut(s) 271, 544
RseI CAYNNNNRTG 1 cut(s) 94
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 610
SatI GCNGC 8 cut(s) 60, 222, 302, 305, 417, 497, 500, 503
Sau3AI GATC 3 cut(s) 45, 262, 388
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 333
SetI ASST 9 cut(s) 72, 177, 198, 226, 252, 333, 421, 454, 493
SfaNI GCATC 2 cut(s) 74, 174
SfcI CTRYAG 1 cut(s) 571
SfoI GGCGCC 1 cut(s) 166
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 73, 356
SmoI CTYRAG 2 cut(s) 73, 356
SsiI CCGC 5 cut(s) 326, 494, 497, 500, 503
SspDI GGCGCC 1 cut(s) 164
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 3 cut(s) 275, 340, 477
TaiI ACGT 2 cut(s) 177, 252
TatI WGTACW 1 cut(s) 543
TauI GCSGC 3 cut(s) 499, 502, 505
Tru1I TTAA 1 cut(s) 610
Tru9I TTAA 1 cut(s) 610
TseI GCWGC 5 cut(s) 59, 221, 301, 304, 416
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.