RLG00000036297

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003044
Physical Location & Seq
Reverse (-)
78549118 .. 78551726
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036297

Sequence Viewer

Length: 969 bp
ATGGCGAAGGCAGTGGAGAATCAGAGGAGGGATGGGAGGACGACCACAACGGAGGCAGAACGAGGAAGGTGGCGGCGCCGCGAAGGTTACCGTAAGATGAGGATAGAGACGAGAGAGAGGGGAAGAAGAAGAGGTAAACATGATTCTGTATCTCAGAAATCAGCTATAACTCGTCGATCTCAATCCGAAAGAGGAGACGGAGTAGCGAACCAAGCTCAATACATGTCCAGAGACAGGGAGAACATAAGATTGAATGAGATTATAGGAGAGAAGATCATCGGGAGAGAAAGTGACATTCATTTCACATCTGCAGCTGATCAAATGGTAATGATGAGTCGACAGAACAATTCATTTGGTCAACTTCCAGGGATGACGACTTTGAACACAATCACACCTTGTGCTGCATGTAAGCTCTTGAGAAGAAAATGTGCTGAAGAATGCCCTTTCTCTCCCTATTTCTCCCCACATGAACCCCACAAATTTTCAGCTGTCCACAAAGTCTTTGGTGCAAGCAATGTCTCCAAGTTGCTAATGGAGGTGTCAGAGAACCAAAGAGCTGATGCTGCAAATAGTCTGGTTTATGAAGCAAACCTGAGATTGAGAGACCCGGTGTACGGATGCGTGGGTGTAATTTCAACCTTGCAGCAAAAAATTGAATCTTTACAAACAGAACTTCATGCTGTTAGGACCGAAATGTTAAGGTACAAGTATAAAGAAGCACCTAGTCAGATCGTTTCTTCTAGAGATCATATTCATCCTCATCATGCGGCTGCTGCTTTAGTTTCTTCTGGGATGGTGTCTATTGCTGCACCACCGCAATCAATTTTGACATCACCACCGGCTGCTCCTCCATCTTCTGTTGTCTTTTCTTCGTCTTCTTCAACTTCAACTTCTTCTTTATATACACCCTCGACAAACACAACGGGTTATAGTTCCTTGTCAAGCGACAATCTCCCGTATTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

323

Amino Acids

35.87

Weight (kDa)

9.63

Isoelectric Point (pI)

70.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 132 - 229 8.3e-40 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 337
AccII CGCG 1 cut(s) 81
AciI CCGC 4 cut(s) 73, 79, 767, 815
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 76
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 2 cut(s) 614, 704
AfiI CCNNNNNNNGG 2 cut(s) 234, 614
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 6 cut(s) 253, 382, 636, 656, 882, 888
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 6 cut(s) 164, 215, 314, 412, 488, 557
AluI AGCT 6 cut(s) 164, 215, 314, 412, 488, 557
Alw26I GTCTC 5 cut(s) 101, 189, 225, 523, 597
ApeKI GCWGC 8 cut(s) 311, 401, 563, 643, 770, 773, 806, 842
ApoI RAATTY 1 cut(s) 479
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 687
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 825
AvaII GGWCC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 867
BbvI GCAGC 8 cut(s) 323, 388, 550, 655, 757, 760, 793, 829
BccI CCATC 3 cut(s) 26, 787, 859
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 5 cut(s) 101, 189, 225, 523, 597
BfaI CTAG 2 cut(s) 723, 741
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 366, 608
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 366, 608
BmsI GCATC 2 cut(s) 550, 608
BpiI GAAGAC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 436
BpuMI CCSGG 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 365
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 614
Bse118I RCCGGY 1 cut(s) 838
Bse3DI GCAATG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 5 cut(s) 37, 375, 623, 754, 798
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 234, 614
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 167, 584
BseRI GAGGAG 3 cut(s) 40, 207, 837
BseXI GCAGC 8 cut(s) 323, 388, 550, 655, 757, 760, 793, 829
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 75
BsiSI CCGG 2 cut(s) 608, 839
BslI CCNNNNNNNGG 2 cut(s) 234, 614
BsmAI GTCTC 5 cut(s) 101, 189, 225, 523, 597
BsmBI CGTCTC 2 cut(s) 101, 189
BsmI GAATGC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 597
Bsp143I GATC 5 cut(s) 176, 273, 316, 729, 745
BspACI CCGC 4 cut(s) 73, 79, 767, 815
BspCNI CTCAG 2 cut(s) 166, 585
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 838
BssAI RCCGGY 1 cut(s) 838
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 5 cut(s) 176, 273, 316, 729, 745
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 2 cut(s) 153, 593
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 5 cut(s) 37, 375, 623, 754, 798
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 5 cut(s) 179, 276, 319, 732, 748
BstMAI GTCTC 5 cut(s) 101, 189, 225, 523, 597
BstMBI GATC 5 cut(s) 176, 273, 316, 729, 745
BstMWI GCNNNNNNNGC 3 cut(s) 212, 563, 773
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 2 cut(s) 226, 408
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 364, 606
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 8 cut(s) 323, 388, 550, 655, 757, 760, 793, 829
BstV2I GAAGAC 1 cut(s) 867
BtsCI GGATG 5 cut(s) 37, 375, 623, 754, 798
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 511
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 838
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 2 cut(s) 613, 703
CviAII CATG 6 cut(s) 140, 223, 405, 467, 677, 764
CviJI RGCY 8 cut(s) 164, 215, 314, 412, 488, 557, 770, 842
CviKI_1 RGCY 8 cut(s) 164, 215, 314, 412, 488, 557, 770, 842
CviQI GTAC 2 cut(s) 613, 703
DdeI CTNAG 2 cut(s) 153, 593
DinI GGCGCC 1 cut(s) 77
DpnI GATC 5 cut(s) 178, 275, 318, 731, 747
DpnII GATC 5 cut(s) 176, 273, 316, 729, 745
DraIII CACNNNGTG 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 453
Eco91I GGTNACC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 364
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
Esp3I CGTCTC 2 cut(s) 101, 189
FaeI CATG 6 cut(s) 143, 226, 408, 470, 680, 767
FatI CATG 6 cut(s) 139, 222, 404, 466, 676, 763
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 337
FokI GGATG 5 cut(s) 44, 382, 630, 741, 805
FspBI CTAG 2 cut(s) 723, 741
GlaI GCGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 79
HapII CCGG 2 cut(s) 608, 839
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 6 cut(s) 143, 226, 408, 470, 680, 767
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 2 cut(s) 338, 359
HindII GTYRAC 2 cut(s) 338, 359
HinfI GANTC 4 cut(s) 19, 143, 334, 656
HpaII CCGG 2 cut(s) 608, 839
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 5 cut(s) 137, 338, 359, 493, 613
Hpy188I TCNGA 5 cut(s) 24, 156, 187, 544, 729
Hpy188III TCNNGA 4 cut(s) 228, 280, 415, 741
Hpy8I GTNNAC 5 cut(s) 137, 338, 359, 493, 613
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 60, 77
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 6 cut(s) 311, 404, 509, 566, 643, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 563, 773
HpyF3I CTNAG 2 cut(s) 153, 593
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 6 cut(s) 143, 226, 408, 470, 680, 767
HspAI GCGC 1 cut(s) 76
KasI GGCGCC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 5 cut(s) 176, 273, 316, 729, 745
LmnI GCTCC 1 cut(s) 850
LpnPI CCDG 9 cut(s) 220, 241, 351, 378, 560, 605, 621, 774, 852
Lsp1109I GCAGC 8 cut(s) 323, 388, 550, 655, 757, 760, 793, 829
LweI GCATC 2 cut(s) 550, 608
MaeI CTAG 2 cut(s) 723, 741
MaeIII GTNAC 2 cut(s) 86, 290
MalI GATC 5 cut(s) 178, 275, 318, 731, 747
MboI GATC 5 cut(s) 176, 273, 316, 729, 745
MluCI AATT 5 cut(s) 346, 479, 630, 651, 822
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 1 cut(s) 343
MseI TTAA 2 cut(s) 698, 967
MspA1I CMGCKG 2 cut(s) 314, 488
MspI CCGG 2 cut(s) 608, 839
MspR9I CCNGG 2 cut(s) 366, 608
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 212, 563, 773
NarI GGCGCC 1 cut(s) 76
NciI CCSGG 1 cut(s) 608
NdeII GATC 5 cut(s) 176, 273, 316, 729, 745
NlaIII CATG 6 cut(s) 143, 226, 408, 470, 680, 767
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 226, 408
PciI ACATGT 1 cut(s) 222
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 19, 143, 656
PleI GAGTC 1 cut(s) 342
PluTI GGCGCC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 342
PscI ACATGT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 364
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 687
PstI CTGCAG 1 cut(s) 313
PvuII CAGCTG 2 cut(s) 314, 488
RsaI GTAC 2 cut(s) 614, 704
RsaNI GTAC 2 cut(s) 613, 703
SalI GTCGAC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 698, 967
Sau3AI GATC 5 cut(s) 176, 273, 316, 729, 745
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 366, 608
SfaNI GCATC 2 cut(s) 550, 608
SfcI CTRYAG 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 77
SinI GGWCC 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 5 cut(s) 346, 479, 630, 651, 822
SsiI CCGC 4 cut(s) 73, 79, 767, 815
SspDI GGCGCC 1 cut(s) 75
SspMI CTAG 2 cut(s) 723, 741
StyD4I CCNGG 2 cut(s) 364, 606
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 175, 337, 911
TaqII GACCGA 1 cut(s) 704
TasI AATT 5 cut(s) 346, 479, 630, 651, 822
TauI GCSGC 3 cut(s) 76, 81, 770
TfiI GAWTC 3 cut(s) 19, 143, 656
Tru1I TTAA 2 cut(s) 698, 967
Tru9I TTAA 2 cut(s) 698, 967
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 8 cut(s) 311, 401, 563, 643, 770, 773, 806, 842
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 6 cut(s) 287, 339, 483, 597, 665, 743
TspGWI ACGGA 3 cut(s) 65, 213, 630
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 687
XapI RAATTY 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 740
XceI RCATGY 2 cut(s) 226, 408
XcmI CCANNNNNNNNNTGG 2 cut(s) 500, 529
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 2 cut(s) 723, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.