Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

16918391 .. 16919900

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGTGGCAAATGTTGCCCCAAGGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCACCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCTCGTCCTGCTGGACCTGGAGCTGCAGCTGCAGCTGCACCGCGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

11.09

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	1.6e-53	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccII	CGCG	1 cut(s)	394
AciI	CCGC	3 cut(s)	265, 274, 392
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	4 cut(s)	111, 276, 332, 333
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	331, 340, 367
AluBI	AGCT	5 cut(s)	167, 199, 374, 380, 386
AluI	AGCT	5 cut(s)	167, 199, 374, 380, 386
Alw26I	GTCTC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	6 cut(s)	143, 374, 377, 380, 383, 386
AspS9I	GGNCC	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	130, 361, 367, 373, 389, 395
BciT130I	CCWGG	3 cut(s)	333, 342, 369
BciVI	GTATCC	2 cut(s)	176, 313
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	375, 381
BfuI	GTATCC	2 cut(s)	176, 313
BisI	GCNGC	6 cut(s)	144, 375, 378, 381, 384, 387
BlsI	GCNGC	6 cut(s)	145, 376, 379, 382, 385, 388
Bme1390I	CCNGG	3 cut(s)	333, 342, 369
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	333, 342, 369
BmsI	GCATC	1 cut(s)	56
BmtI	GCTAGC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	93, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 276, 332, 333
Bse3DI	GCAATG	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	333, 342, 369
BseDI	CCNNGG	2 cut(s)	93, 332
BseLI	CCNNNNNNNGG	4 cut(s)	111, 276, 332, 333
BseMI	GCAATG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	6 cut(s)	130, 361, 367, 373, 389, 395
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	349
BslI	CCNNNNNNNGG	4 cut(s)	111, 276, 332, 333
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	265, 274, 392
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	2 cut(s)	379, 385
BspOI	GCTAGC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	93, 332
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	333, 342, 369
Bst4CI	ACNGT	3 cut(s)	23, 77, 221
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	141, 169
BstFNI	CGCG	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 273, 380, 383, 386
BstNI	CCWGG	3 cut(s)	333, 342, 369
BstSCI	CCNGG	3 cut(s)	331, 340, 367
BstSFI	CTRYAG	2 cut(s)	375, 381
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	6 cut(s)	130, 361, 367, 373, 389, 395
BsuI	GTATCC	2 cut(s)	176, 313
BsuRI	GGCC	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	141, 169
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	3 cut(s)	160, 220, 318
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	8 cut(s)	104, 143, 167, 199, 331, 374, 380, 386
CviKI_1	RGCY	8 cut(s)	104, 143, 167, 199, 331, 374, 380, 386
CviQI	GTAC	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	331, 340, 367
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	248
FaiI	YATR	4 cut(s)	177, 202, 204, 246
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	144, 375, 378, 381, 384, 387
Fsp4HI	GCNGC	6 cut(s)	144, 375, 378, 381, 384, 387
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	6 cut(s)	144, 375, 378, 381, 384, 387
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	3 cut(s)	160, 220, 318
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	65, 401
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	23, 77, 221
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	206, 377, 383, 389
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 273, 380, 383, 386
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	248
LmnI	GCTCC	3 cut(s)	74, 136, 371
Lsp1109I	GCAGC	6 cut(s)	130, 361, 367, 373, 389, 395
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	9 cut(s)	21, 38, 105, 117, 172, 300, 306, 310, 363
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	380, 386
MspR9I	CCNGG	3 cut(s)	333, 342, 369
MvaI	CCWGG	3 cut(s)	333, 342, 369
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	5 cut(s)	87, 273, 380, 383, 386
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	351
PkrI	GCNGC	6 cut(s)	145, 376, 379, 382, 385, 388
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	3 cut(s)	331, 340, 367
PspGI	CCWGG	3 cut(s)	331, 340, 367
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	2 cut(s)	379, 385
PvuII	CAGCTG	2 cut(s)	380, 386
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	6 cut(s)	144, 375, 378, 381, 384, 387
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	333, 342, 369
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	2 cut(s)	375, 381
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	243
SsiI	CCGC	3 cut(s)	265, 274, 392
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	331, 340, 367
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	23, 77, 221
TaiI	ACGT	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	6 cut(s)	143, 374, 377, 380, 383, 386
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	365
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.