Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Reverse (-)

20892007 .. 20893478

Gene Structure 1472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTGAAACCAATCAGGTGTTCCAACTGTGGAAAGTGTTGCCCCAAGGACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAGGTTACACTCTCCCAAAGCTTTACGCTAAGACGCAGTACTGTGTCTCGTGTGCTATCCATTCTCACGTTGTGAGAGTCCGATCCCGCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCCTCGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

130

Amino Acids

14.63

Weight (kDa)

11.1

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	1.5e-53	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	218, 286
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	10, 161
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	2 cut(s)	167, 199
AluI	AGCT	2 cut(s)	167, 199
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	143, 377
AspLEI	GCGC	1 cut(s)	15
AsuNHI	GCTAGC	1 cut(s)	167
BauI	CACGAG	2 cut(s)	226, 384
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	130, 364
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	144, 378
BlsI	GCNGC	2 cut(s)	145, 379
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	342
BmtI	GCTAGC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	43, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	43, 93
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseRI	GAGGAG	2 cut(s)	342, 372
BseXI	GCAGC	2 cut(s)	130, 364
BsgI	GTGCAG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	43, 93
BssMI	GATC	1 cut(s)	260
BssSI	CACGAG	2 cut(s)	226, 384
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	2 cut(s)	226, 384
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	44, 77, 221, 275
BstC8I	GCNNGC	3 cut(s)	141, 169, 333
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 377, 386
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	130, 364
BsuI	GTATCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	141, 169, 333
CfoI	GCGC	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	362
CseI	GACGC	3 cut(s)	160, 220, 318
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	217, 285
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	5 cut(s)	143, 167, 199, 331, 350
CviKI_1	RGCY	5 cut(s)	143, 167, 199, 331, 350
CviQI	GTAC	2 cut(s)	217, 285
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DraIII	CACNNNGTG	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	53
FaiI	YATR	2 cut(s)	39, 51
FatI	CATG	1 cut(s)	49
FauI	CCCGC	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	144, 378
Fsp4HI	GCNGC	2 cut(s)	144, 378
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	144, 378
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	3 cut(s)	160, 220, 318
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	44, 77, 221, 275
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 377, 386
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	53
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	3 cut(s)	355, 376, 385
Lsp1109I	GCAGC	2 cut(s)	130, 364
MabI	ACCWGGT	1 cut(s)	340
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	306, 310, 363, 393
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	368, 377, 386
NdeII	GATC	1 cut(s)	260
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	145, 379
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	351
RsaI	GTAC	2 cut(s)	218, 286
RsaNI	GTAC	2 cut(s)	217, 285
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	144, 378
Sau3AI	GATC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	7 cut(s)	68, 169, 184, 201, 249, 298, 343
SexAI	ACCWGGT	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	42
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	4 cut(s)	44, 77, 221, 275
TaiI	ACGT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	2 cut(s)	143, 377
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.