Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Forward (+)

47456534 .. 47458491

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACTTTCAAGCGCAGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCTAAGGACAAGGCTATCAAGAGGTTCTTGGTGAGGAACATCGTGGAGCAAGCTGCGGTGAGAGATGTGCAAGAGGCTTGTGTCTATGAGCAATACACTCTGCCGAAGCTGTATGCTAAGATGCAGTACTGTGTGTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTAGGTCTCGCACCAACAGGAGGAACCGTGAGCCACCACAGAGATTCATCAGACGCAGGGTAAAGCTTCTTTTTACAGCTTATAGAAAACCTATGTTAACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

120

Amino Acids

14.28

Weight (kDa)

10.97

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 105	1.8e-53	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	4 cut(s)	143, 199, 322, 335
AluI	AGCT	4 cut(s)	143, 199, 322, 335
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	25, 40, 46
ApeKI	GCWGC	3 cut(s)	66, 87, 143
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	133, 160
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	53, 74, 130
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	267
BisI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
BlsI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
BmcAI	AGTACT	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	3 cut(s)	53, 74, 130
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	3 cut(s)	27, 42, 48
BsiEI	CGRYCG	2 cut(s)	28, 43
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	27, 42, 48
Bso31I	GGTCTC	1 cut(s)	267
BspACI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
BspANI	GGCC	3 cut(s)	27, 42, 48
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	221, 284
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	93, 207
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	53, 74, 130
BstZI	CGGCCG	2 cut(s)	25, 40
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	27, 42, 48
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	141
CciNI	GCGGCCGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	15
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	217
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	93, 207
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
EclXI	CGGCCG	2 cut(s)	25, 40
Eco31I	GGTCTC	1 cut(s)	267
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco81I	CCTNAGG	1 cut(s)	93
FaiI	YATR	4 cut(s)	177, 204, 339, 350
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
HaeIII	GGCC	3 cut(s)	27, 42, 48
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	300
HpaI	GTTAAC	1 cut(s)	354
HphI	GGTGA	2 cut(s)	133, 160
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	354
HpyCH4III	ACNGT	2 cut(s)	221, 284
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	160, 214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
HpyF3I	CTNAG	2 cut(s)	93, 207
HpySE526I	ACGT	1 cut(s)	246
HspAI	GCGC	1 cut(s)	13
KspAI	GTTAAC	1 cut(s)	354
KspI	CCGCGG	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	74, 136
LpnPI	CCDG	2 cut(s)	259, 298
Lsp1109I	GCAGC	3 cut(s)	53, 74, 130
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	105, 117, 157, 246, 270
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	2 cut(s)	45, 66
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
NlaIV	GGNNCC	1 cut(s)	281
NotI	GCGGCCGC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
PspN4I	GGNNCC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacII	CCGCGG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
ScaI	AGTACT	1 cut(s)	218
SetI	ASST	8 cut(s)	116, 145, 201, 249, 263, 324, 337, 349
SfaNI	GCATC	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SsiI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
TaaI	ACNGT	2 cut(s)	221, 284
TaiI	ACGT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	5 cut(s)	27, 30, 45, 48, 81
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	3 cut(s)	66, 87, 143
TspDTI	ATGAA	2 cut(s)	49, 292
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.