Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002764

Physical Location & Seq

Genomic Coordinates Reverse (-)

16944984 .. 16946548

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGTACTCCTCCTCCACGTTTCACCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCAGGACAGGCCCCTCGTCCAGCTGGGCCTGGAGCTGCAGCTGCACCGCGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0015935 GO:0016020 GO:0022626 GO:0022627 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S26e

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

11.09

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	1.6e-53	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40510 AT2G40590 AT3G56340
fragaria_vesca	FvH4_3g40340 FvH4_7g25731
malus_domestica	MD01G1164800.v1.1 MD03G1053100.v1.1 MD07G1232300.v1.1 MD11G1054800.v1.1
prunus_persica	Prupe.2G262500_v2.0.a1 Prupe.6G042400_v2.0.a1 Prupe.6G042400_v2.0.a1
pyrus_communis	pycom01g17890 pycom03g04220 pycom07g21010 pycom11g04470
rosa_chinensis	RchiOBHm_Chr1g0371981 RchiOBHm_Chr5g0072701 RchiOBHm_Chr7g0216781
rosa_laevigata	RLG00000026931 RLG00000036326
rosa_multiflora	Rmu_sc0001755.1_g000039 Rmu_sc0003160.1_g000033
rosa_roxburghii	Rroxscaffold_1G00008450 Rroxscaffold_4G00285340
rosa_rugosa	Rorug01G0367600 Rorug05G0419400
rosa_samantha	Rh1AG377400 Rh1BG340800 Rh1CG353900 Rh1DG371700 Rh5AG476300 Rh5BG496500 Rh5CG520300 Rh5DG508900 Rh7AG302300 Rh7BG294300 Rh7CG321000
rosa_wichuraiana	Rw5G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	388
AciI	CCGC	3 cut(s)	78, 265, 386
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	3 cut(s)	111, 276, 332
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	10
AjiI	CACGTC	2 cut(s)	52, 247
AjnI	CCWGG	3 cut(s)	331, 340, 367
AluBI	AGCT	5 cut(s)	167, 199, 362, 374, 380
AluI	AGCT	5 cut(s)	167, 199, 362, 374, 380
Alw26I	GTCTC	1 cut(s)	229
AoxI	GGCC	3 cut(s)	102, 348, 365
ApeKI	GCWGC	5 cut(s)	87, 143, 374, 377, 380
AspS9I	GGNCC	2 cut(s)	349, 365
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	74, 130, 361, 367, 389
BciT130I	CCWGG	3 cut(s)	333, 342, 369
BciVI	GTATCC	2 cut(s)	176, 313
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	375
BfuI	GTATCC	2 cut(s)	176, 313
BisI	GCNGC	6 cut(s)	79, 88, 144, 375, 378, 381
BlsI	GCNGC	6 cut(s)	80, 89, 145, 376, 379, 382
Bme1390I	CCNGG	3 cut(s)	333, 342, 369
BmgBI	CACGTC	2 cut(s)	52, 247
BmgT120I	GGNCC	2 cut(s)	349, 365
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	333, 342, 369
BmsI	GCATC	1 cut(s)	56
BmtI	GCTAGC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 277, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 276, 332
Bse21I	CCTNAGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	333, 342, 369
BseLI	CCNNNNNNNGG	3 cut(s)	111, 276, 332
BseMI	GCAATG	1 cut(s)	188
BseRI	GAGGAG	2 cut(s)	279, 282
BseXI	GCAGC	5 cut(s)	74, 130, 361, 367, 389
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	104, 350, 367
BslI	CCNNNNNNNGG	3 cut(s)	111, 276, 332
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	104, 350, 367
BspACI	CCGC	3 cut(s)	78, 265, 386
BspANI	GGCC	3 cut(s)	104, 350, 367
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	188
Bst2UI	CCWGG	3 cut(s)	333, 342, 369
Bst4CI	ACNGT	3 cut(s)	23, 221, 275
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	141, 169
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 337, 380
BstNI	CCWGG	3 cut(s)	333, 342, 369
BstSCI	CCNGG	3 cut(s)	331, 340, 367
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	5 cut(s)	74, 130, 361, 367, 389
Bsu36I	CCTNAGG	1 cut(s)	93
BsuI	GTATCC	2 cut(s)	176, 313
BsuRI	GGCC	3 cut(s)	104, 350, 367
BtrI	CACGTC	2 cut(s)	52, 247
Cac8I	GCNNGC	2 cut(s)	141, 169
Cfr13I	GGNCC	2 cut(s)	349, 365
CseI	GACGC	3 cut(s)	160, 220, 318
Csp6I	GTAC	1 cut(s)	285
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	93
DraIII	CACNNNGTG	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	331, 340, 367
FaiI	YATR	3 cut(s)	177, 202, 204
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	79, 88, 144, 375, 378, 381
Fsp4HI	GCNGC	6 cut(s)	79, 88, 144, 375, 378, 381
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	6 cut(s)	79, 88, 144, 375, 378, 381
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	104, 350, 367
HgaI	GACGC	3 cut(s)	160, 220, 318
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	65, 395
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	23, 221, 275
HpyCH4IV	ACGT	3 cut(s)	51, 246, 298
HpyCH4V	TGCA	3 cut(s)	206, 377, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 337, 380
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	3 cut(s)	51, 246, 298
LmnI	GCTCC	3 cut(s)	74, 136, 371
Lsp1109I	GCAGC	5 cut(s)	74, 130, 361, 367, 389
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	51, 246, 298
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	9 cut(s)	21, 38, 105, 117, 172, 300, 303, 310, 363
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	362, 380
MspR9I	CCNGG	3 cut(s)	333, 342, 369
MvaI	CCWGG	3 cut(s)	333, 342, 369
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 87, 337, 380
NheI	GCTAGC	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	351
PkrI	GCNGC	6 cut(s)	80, 89, 145, 376, 379, 382
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	3 cut(s)	331, 340, 367
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	331, 340, 367
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	349, 365
PstI	CTGCAG	1 cut(s)	379
PvuII	CAGCTG	2 cut(s)	362, 380
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	6 cut(s)	79, 88, 144, 375, 378, 381
Sau96I	GGNCC	2 cut(s)	349, 365
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	3 cut(s)	333, 342, 369
SetI	ASST	9 cut(s)	54, 116, 169, 201, 249, 301, 364, 376, 382
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	375
SsiI	CCGC	3 cut(s)	78, 265, 386
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	331, 340, 367
TaaI	ACNGT	3 cut(s)	23, 221, 275
TaiI	ACGT	3 cut(s)	54, 249, 301
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	5 cut(s)	87, 143, 374, 377, 380
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	248
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.